Rh3AG243200
NAC Family

NAC domain-containing protein 67-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0002868
Physical Location & Seq
Forward (+)
25575425 .. 25577696
2272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG243200.1

Sequence Viewer

Length: 1278 bp
ATGGTTCCAAACAATCAGCAAAGTGATACGATGTCTGATGGAGAGATTGATGATTATTTTAGATCTTTTCCACCAGGTTATCAATTTGTCCCCACTGATGCAGAGTTGATTATATATTATTTGAAGAGAAAGATCTTGAATCAACAACTACCCGTGAACCGGATTCGTGATGAGAATATTTATCACTACCATCCTCAAACTCTTGCTGAAATGTATCCGAGAATTAGAGAAATTGAATGGTACTTTTTCTCTTCCAGAGACCGAAGGTACCCCAATGGATCTCGGCCTAATCGATCAGCCAAAGGTGGATACTGGAAGGCAACGAAAAGAGATGAGATCATCACAGCTCAAGGTGGTGAAGAAATTGGATTCAAAATGCATCTGGAATTTTATGAAGGAACACATGCACAAGGTAGAAAGACAAACTGGAAAATGCATGAATATAGGATCAAAGAAGAGAATGAAGAGAATGATATTGGTCCTCCTCAAAATACCAACAAGGGTGAAGGTATCAGCATGAGGTTGGATGATTGGGTTTTGTGTAAGATTTACATAAAGAAGAATTTCAAGGCTGATACAGACAGCAACAGTTCAAAGACATCAGACAATTCTGATCAAGTAGTACTCCCAGTAACAAATGTTACAACATCTCCTGATTGTCAAAATAAATTAGCTATTCAGCATGAAGTTCAAGATCAATCTCTCAATGCCTCACAATTCGACCACAATGGCTTCTCAACTTTGACGAACTATCGTGATGTAGAATCCAGCAGCAGCAACTTCTGGAATCAAAACTACACAGATGATTACGACACGTACTTGATGCAGATGAGTCGAGATCCATCATCGTCACGATTCTTTTCTTCTCCGTTTCCCTTGCAATCTTCAACAGACCAGATTTGCGCAGAATTGGAGCCTGTAGACGATAAGATATCAGAGGTCGATCCAAGTTCTATGTTACCTGCGCATGTCAGAGAATGTGATGAGAATATATCAAAGAATAAGAATCAAAACTATACAGATGATTACGACACGTACTTGATGCAGATGAGTCGAGATCCATCGTCGTCACGATTATTTTCTTCTCCGTTTCCCTTGCAATCTTCAACAGACCAGATTTGCGCAGGATTGAAGCCGGTAGATGATAAGATATCAGAGGTCGATCCAAGTTCTATTGTGTTACCTGCGCATGTCAGAGAATATGATAATCGTGCATGTAAAGCCGAGCCTATTCAGCCTGCAGTTAGGGATGAAGGTGATGATCATGTGTCTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

425

Amino Acids

49.04

Weight (kDa)

4.92

Isoelectric Point (pI)

59.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 24 - 150 8e-39 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 4 cut(s) 904, 966, 1123, 1188
Acc36I ACCTGC 2 cut(s) 970, 1192
Acc65I GGTACC 1 cut(s) 267
AccB1I GGYRCC 1 cut(s) 267
AccI GTMKAC 1 cut(s) 921
AclWI GGATC 6 cut(s) 286, 455, 833, 938, 1052, 1157
AcsI RAATTY 2 cut(s) 386, 562
AfaI GTAC 5 cut(s) 242, 269, 624, 818, 1037
AfiI CCNNNNNNNGG 1 cut(s) 159
AflIII ACRYGT 2 cut(s) 813, 1032
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 2 cut(s) 347, 674
AluI AGCT 2 cut(s) 347, 674
Alw26I GTCTC 1 cut(s) 252
AlwI GGATC 6 cut(s) 286, 455, 833, 938, 1052, 1157
AoxI GGCC 1 cut(s) 284
ApeKI GCWGC 2 cut(s) 771, 774
ApoI RAATTY 2 cut(s) 386, 562
Asp700I GAANNNNTTC 1 cut(s) 563
Asp718I GGTACC 1 cut(s) 267
AspLEI GCGC 4 cut(s) 905, 967, 1124, 1189
AspS9I GGNCC 1 cut(s) 479
AsuHPI GGTGA 3 cut(s) 368, 515, 1268
AvaII GGWCC 1 cut(s) 479
BanI GGYRCC 1 cut(s) 267
BbvI GCAGC 2 cut(s) 783, 786
BccI CCATC 4 cut(s) 32, 198, 850, 1069
BcgI CGANNNNNNTGC 4 cut(s) 815, 849, 1034, 1068
BciT130I CCWGG 1 cut(s) 75
BciVI GTATCC 2 cut(s) 225, 302
BclI TGATCA 2 cut(s) 613, 1261
BcoDI GTCTC 1 cut(s) 252
BfmI CTRYAG 2 cut(s) 918, 1239
BfuAI ACCTGC 2 cut(s) 970, 1192
BfuI GTATCC 2 cut(s) 225, 302
BglII AGATCT 2 cut(s) 62, 132
BisI GCNGC 2 cut(s) 772, 775
BlsI GCNGC 2 cut(s) 773, 776
BmcAI AGTACT 1 cut(s) 624
Bme1390I CCNGG 1 cut(s) 75
Bme18I GGWCC 1 cut(s) 479
BmgT120I GGNCC 1 cut(s) 479
BmiI GGNNCC 3 cut(s) 6, 269, 915
BmrFI CCNGG 1 cut(s) 75
BmrI ACTGGG 1 cut(s) 623
BmsI GCATC 4 cut(s) 88, 388, 813, 1032
BmuI ACTGGG 1 cut(s) 623
BpuEI CTTGAG 1 cut(s) 333
Bsa29I ATCGAT 1 cut(s) 292
BsaAI YACGTR 2 cut(s) 816, 1035
BsaI GGTCTC 1 cut(s) 252
BsaWI WCCGGW 1 cut(s) 159
BsaXI ACNNNNNCTCC 2 cut(s) 634, 664
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse118I RCCGGY 1 cut(s) 1135
Bse1I ACTGG 3 cut(s) 317, 431, 629
BseBI CCWGG 1 cut(s) 75
BseCI ATCGAT 1 cut(s) 292
BseGI GGATG 3 cut(s) 190, 532, 1255
BseLI CCNNNNNNNGG 1 cut(s) 159
BseNI ACTGG 3 cut(s) 317, 431, 629
BseRI GAGGAG 1 cut(s) 474
BseXI GCAGC 2 cut(s) 783, 786
BshFI GGCC 1 cut(s) 286
BshNI GGYRCC 1 cut(s) 267
BshVI ATCGAT 1 cut(s) 292
BsiSI CCGG 2 cut(s) 160, 1136
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 159
BsmAI GTCTC 1 cut(s) 252
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 1 cut(s) 286
Bso31I GGTCTC 1 cut(s) 252
BspANI GGCC 1 cut(s) 286
BspDI ATCGAT 1 cut(s) 292
BspLI GGNNCC 3 cut(s) 6, 269, 915
BspMAI CTGCAG 1 cut(s) 1243
BspMI ACCTGC 2 cut(s) 970, 1192
BspPI GGATC 6 cut(s) 286, 455, 833, 938, 1052, 1157
BspT107I GGYRCC 1 cut(s) 267
BspTNI GGTCTC 1 cut(s) 252
BsrFI RCCGGY 1 cut(s) 1135
BsrI ACTGG 3 cut(s) 317, 431, 629
BssAI RCCGGY 1 cut(s) 1135
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 590
Bst6I CTCTTC 4 cut(s) 119, 256, 450, 459
BstBAI YACGTR 2 cut(s) 816, 1035
BstC8I GCNNGC 1 cut(s) 1239
BstF5I GGATG 3 cut(s) 190, 532, 1255
BstHHI GCGC 4 cut(s) 905, 967, 1124, 1189
BstMAI GTCTC 1 cut(s) 252
BstMWI GCNNNNNNNGC 2 cut(s) 1220, 1234
BstNI CCWGG 1 cut(s) 75
BstNSI RCATGY 4 cut(s) 407, 971, 1193, 1218
BstSCI CCNGG 1 cut(s) 73
BstSFI CTRYAG 2 cut(s) 918, 1239
BstV1I GCAGC 2 cut(s) 783, 786
BstX2I RGATCY 5 cut(s) 62, 132, 278, 838, 1057
BstYI RGATCY 5 cut(s) 62, 132, 278, 838, 1057
Bsu15I ATCGAT 1 cut(s) 292
BsuI GTATCC 2 cut(s) 225, 302
BsuRI GGCC 1 cut(s) 286
BsuTUI ATCGAT 1 cut(s) 292
BtsCI GGATG 3 cut(s) 190, 532, 1255
BtsIMutI CAGTG 1 cut(s) 93
BveI ACCTGC 2 cut(s) 970, 1192
Cac8I GCNNGC 1 cut(s) 1239
CfoI GCGC 4 cut(s) 905, 967, 1124, 1189
Cfr10I RCCGGY 1 cut(s) 1135
Cfr13I GGNCC 1 cut(s) 479
ClaI ATCGAT 1 cut(s) 292
CsiI ACCWGGT 1 cut(s) 73
Csp6I GTAC 5 cut(s) 241, 268, 623, 817, 1036
CviAII CATG 8 cut(s) 404, 437, 517, 683, 968, 1190, 1215, 1265
CviQI GTAC 5 cut(s) 241, 268, 623, 817, 1036
Eam1104I CTCTTC 4 cut(s) 119, 256, 450, 459
EarI CTCTTC 4 cut(s) 119, 256, 450, 459
Eco31I GGTCTC 1 cut(s) 252
Eco32I GATATC 2 cut(s) 933, 1152
Eco47I GGWCC 1 cut(s) 479
EcoRII CCWGG 1 cut(s) 73
EcoRV GATATC 2 cut(s) 933, 1152
EcoT22I ATGCAT 2 cut(s) 381, 438
FaeI CATG 8 cut(s) 407, 440, 520, 686, 971, 1193, 1218, 1268
FaqI GGGAC 1 cut(s) 74
FatI CATG 8 cut(s) 403, 436, 516, 682, 967, 1189, 1214, 1264
FbaI TGATCA 2 cut(s) 613, 1261
FblI GTMKAC 1 cut(s) 921
Fnu4HI GCNGC 2 cut(s) 772, 775
FokI GGATG 3 cut(s) 177, 539, 1262
Fsp4HI GCNGC 2 cut(s) 772, 775
FspI TGCGCA 4 cut(s) 904, 966, 1123, 1188
GlaI GCGC 4 cut(s) 904, 966, 1123, 1188
GluI GCNGC 2 cut(s) 772, 775
HaeIII GGCC 1 cut(s) 286
HapII CCGG 2 cut(s) 160, 1136
HhaI GCGC 4 cut(s) 905, 967, 1124, 1189
Hin1II CATG 8 cut(s) 407, 440, 520, 686, 971, 1193, 1218, 1268
Hin6I GCGC 4 cut(s) 903, 965, 1122, 1187
HinP1I GCGC 4 cut(s) 903, 965, 1122, 1187
HinfI GANTC 9 cut(s) 139, 163, 369, 764, 787, 832, 855, 1006, 1051
HpaII CCGG 2 cut(s) 160, 1136
HphI GGTGA 3 cut(s) 368, 515, 1268
Hpy166II GTNNAC 2 cut(s) 157, 922
Hpy188I TCNGA 8 cut(s) 37, 219, 604, 613, 937, 974, 1156, 1196
Hpy8I GTNNAC 2 cut(s) 157, 922
Hpy99I CGWCG 1 cut(s) 1069
HpyAV CCTTC 5 cut(s) 258, 310, 389, 500, 1247
HpyCH4III ACNGT 1 cut(s) 590
HpyCH4IV ACGT 2 cut(s) 815, 1034
HpyF10VI GCNNNNNNNGC 2 cut(s) 1220, 1234
HpySE526I ACGT 2 cut(s) 815, 1034
Hsp92II CATG 8 cut(s) 407, 440, 520, 686, 971, 1193, 1218, 1268
HspAI GCGC 4 cut(s) 903, 965, 1122, 1187
KpnI GGTACC 1 cut(s) 271
Ksp22I TGATCA 2 cut(s) 613, 1261
LmnI GCTCC 1 cut(s) 913
Lsp1109I GCAGC 2 cut(s) 783, 786
LweI GCATC 4 cut(s) 88, 388, 813, 1032
MabI ACCWGGT 1 cut(s) 73
MaeII ACGT 2 cut(s) 815, 1034
MaeIII GTNAC 6 cut(s) 631, 640, 849, 957, 1068, 1179
MflI RGATCY 5 cut(s) 62, 132, 278, 838, 1057
MlyI GAGTC 2 cut(s) 841, 1060
MmeI TCCRAC 1 cut(s) 504
MnlI CCTC 7 cut(s) 204, 492, 495, 513, 721, 931, 1150
Mph1103I ATGCAT 2 cut(s) 381, 438
MroXI GAANNNNTTC 1 cut(s) 563
MspI CCGG 2 cut(s) 160, 1136
MspR9I CCNGG 1 cut(s) 75
MvaI CCWGG 1 cut(s) 75
MwoI GCNNNNNNNGC 2 cut(s) 1220, 1234
NlaIII CATG 8 cut(s) 407, 440, 520, 686, 971, 1193, 1218, 1268
NlaIV GGNNCC 3 cut(s) 6, 269, 915
NmeAIII GCCGAG 2 cut(s) 262, 1249
NmuCI GTSAC 2 cut(s) 849, 1068
NsbI TGCGCA 4 cut(s) 904, 966, 1123, 1188
NsiI ATGCAT 2 cut(s) 381, 438
NspI RCATGY 4 cut(s) 407, 971, 1193, 1218
PcsI WCGNNNNNNNCGW 1 cut(s) 289
PdmI GAANNNNTTC 1 cut(s) 563
PfeI GAWTC 7 cut(s) 139, 163, 369, 764, 787, 855, 1006
PkrI GCNGC 2 cut(s) 773, 776
PleI GAGTC 2 cut(s) 840, 1059
PpsI GAGTC 2 cut(s) 840, 1059
Ppu21I YACGTR 2 cut(s) 816, 1035
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 3 cut(s) 6, 269, 915
PspPI GGNCC 1 cut(s) 479
PstI CTGCAG 1 cut(s) 1243
PsuI RGATCY 5 cut(s) 62, 132, 278, 838, 1057
RsaI GTAC 5 cut(s) 242, 269, 624, 818, 1037
RsaNI GTAC 5 cut(s) 241, 268, 623, 817, 1036
SatI GCNGC 2 cut(s) 772, 775
Sau96I GGNCC 1 cut(s) 479
ScaI AGTACT 1 cut(s) 624
SchI GAGTC 2 cut(s) 841, 1060
ScrFI CCNGG 1 cut(s) 75
SexAI ACCWGGT 1 cut(s) 73
SfaNI GCATC 4 cut(s) 88, 388, 813, 1032
SfcI CTRYAG 2 cut(s) 918, 1239
SinI GGWCC 1 cut(s) 479
SmlI CTYRAG 1 cut(s) 348
SmoI CTYRAG 1 cut(s) 348
SspI AATATT 1 cut(s) 178
StyD4I CCNGG 1 cut(s) 73
TaaI ACNGT 1 cut(s) 590
TaiI ACGT 2 cut(s) 818, 1037
TaqI TCGA 6 cut(s) 292, 720, 835, 942, 1054, 1161
TaqII GACCGA 1 cut(s) 276
TatI WGTACW 1 cut(s) 622
TfiI GAWTC 7 cut(s) 139, 163, 369, 764, 787, 855, 1006
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 2 cut(s) 849, 1068
TseI GCWGC 2 cut(s) 771, 774
Tsp45I GTSAC 2 cut(s) 849, 1068
TspDTI ATGAA 5 cut(s) 408, 453, 477, 699, 1266
TspGWI ACGGA 2 cut(s) 858, 1077
TspRI CASTG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 479
XapI RAATTY 2 cut(s) 386, 562
XceI RCATGY 4 cut(s) 407, 971, 1193, 1218
XmiI GTMKAC 1 cut(s) 921
XmnI GAANNNNTTC 1 cut(s) 563
ZrmI AGTACT 1 cut(s) 624
Zsp2I ATGCAT 2 cut(s) 381, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.