Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002868

Physical Location & Seq

Genomic Coordinates Forward (+)

27120807 .. 27123144

Gene Structure 2338 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG273100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGTATCCGAGAATTAGAGAAATTGAATGGTACTTTTTCTCTTCCAGAGACCGAAGGTACCCCAATGGATCTCGGCCTAATCGATCAGCAAAAGGTGGATACTGGAAGGCAACGAAAAGAGATGAGATCATCACAGCTCAAGGTGGTGAAGAAATTGGATTCAAAATGCATCTGGAATTTTATGAAGGAACACATGCACAAGGTAGAAAGACAAACTGGAAAATGCATGAATATAGGATCAAAGAAGAGAATGAAGAGAATGATATTGGTCCTCCTCAAAATACCAACAAGGGTGAAGGTATCAGCATGAGGTTGGATGATTGGGTTTTGTGTAAGATTTACATAAAGAAGAATTTCAAGGTTGATACAGACAGCAACAGTTCAAAGACATCAGACAATTCTGGTCAAGTAGTACTCCCAGTAACAAATGTTACAACATCTCGTGATTGTCAAAATAAATTAGCTATTCAGCATGAAGTTCAAGATCAATCTCTCAATGCCTCACAATTCGACCACAATGGCTTCTCAACTTTGACGAACTATCGTGATGTAGAATCCAGCAGCAGCAACTTCTGGAATCAAAACTACACAGATGATTACGACACGTACTTGATGCAGATGAGTCGAGATCCATTATCGTCACGATTCTTTTCTTCTCCGTTTCCCTTGCAATCTTCAACAGACCAGATTTGCACAGAATTGGAGCCTGTAGATGATAAGATATCAGAGGTCGATCCAAGTTCTATGTTACCTGCGCATGTCAGAGAATGTGATGAGAATATGTCAGAGAATAAGAATCAAAACTATACAGATGATTACGACACGTACTTGATGCAGATGAGTCGAGATCCATCGTCGTCACGATTATTTTCTTCTCCGTTTCCCTTGCAATCTTCAACAGACCAGATTTGCGCAGGATTGGAGCCTGTAGATGATAAGATATCAGAGGTCGATCCAAGTTCTATTGTGTTACCTGCGCATGTCAGAGAATATGATAATCGTGCATGTAAAGCCGAGCCTATTCAGCCTGCAGTTAGGGATGAAGGTGATGATCATGTGTCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009908 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

355

Amino Acids

40.81

Weight (kDa)

4.87

Isoelectric Point (pI)

58.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	6 - 80	4e-21	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23460 FvH4_6g23470
malus_domestica	MD14G1069400.v1.1
prunus_persica	Prupe.7G064900_v2.0.a1 Prupe.7G065000_v2.0.a1
pyrus_communis	pycom12g06060
rosa_chinensis	RchiOBHm_Chr3g0481471 RchiOBHm_Chr3g0481481
rosa_laevigata	RLG00000023394 RLG00000023396 RLG00000023397
rosa_multiflora	Rmu_sc0000064.1_g000029 Rmu_sc0000064.1_g000030 Rmu_sc0000064.1_g000031 Rmu_sc0011674.1_g000001 Rmu_sc0020270.1_g000003 Rmu_sc0021673.1_g000001
rosa_roxburghii	Rroxscaffold_6G00400410 Rroxscaffold_6G00400420 Rroxscaffold_6G00400430
rosa_rugosa	Rorug03G0191900 Rorug03G0192000 Rorug03G0192100
rosa_samantha	Rh3AG243100 Rh3AG243200 Rh3AG243300 Rh3BG278000 Rh3BG278100 Rh3BG278300 Rh3CG273000 Rh3CG273100 Rh3CG273300 Rh3DG270000 Rh3DG270100 Rh3DG270200 Rh3DG270300
rosa_wichuraiana	Rw3G021710 Rw3G021720 Rw3G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	3 cut(s)	756, 913, 978
Acc36I	ACCTGC	2 cut(s)	760, 982
Acc65I	GGTACC	1 cut(s)	57
AccB1I	GGYRCC	1 cut(s)	57
AclWI	GGATC	6 cut(s)	76, 245, 623, 728, 842, 947
AcsI	RAATTY	2 cut(s)	176, 352
AfaI	GTAC	5 cut(s)	32, 59, 414, 608, 827
AflIII	ACRYGT	2 cut(s)	603, 822
AgsI	TTSAA	7 cut(s)	26, 163, 358, 384, 482, 678, 897
AluBI	AGCT	2 cut(s)	137, 464
AluI	AGCT	2 cut(s)	137, 464
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	6 cut(s)	76, 245, 623, 728, 842, 947
AoxI	GGCC	1 cut(s)	74
ApeKI	GCWGC	2 cut(s)	561, 564
ApoI	RAATTY	2 cut(s)	176, 352
Asp700I	GAANNNNTTC	1 cut(s)	353
Asp718I	GGTACC	1 cut(s)	57
AspLEI	GCGC	3 cut(s)	757, 914, 979
AspS9I	GGNCC	1 cut(s)	269
AsuHPI	GGTGA	3 cut(s)	158, 305, 1058
AvaII	GGWCC	1 cut(s)	269
BanI	GGYRCC	1 cut(s)	57
BauI	CACGAG	1 cut(s)	441
BbvI	GCAGC	2 cut(s)	573, 576
BccI	CCATC	1 cut(s)	859
BcgI	CGANNNNNNTGC	4 cut(s)	605, 639, 824, 858
BciVI	GTATCC	2 cut(s)	15, 92
BclI	TGATCA	1 cut(s)	1051
BcoDI	GTCTC	1 cut(s)	42
BfmI	CTRYAG	3 cut(s)	708, 927, 1029
BfuAI	ACCTGC	2 cut(s)	760, 982
BfuI	GTATCC	2 cut(s)	15, 92
BisI	GCNGC	2 cut(s)	562, 565
BlsI	GCNGC	2 cut(s)	563, 566
BmcAI	AGTACT	1 cut(s)	414
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	3 cut(s)	59, 705, 924
BmrI	ACTGGG	1 cut(s)	413
BmsI	GCATC	3 cut(s)	178, 603, 822
BmuI	ACTGGG	1 cut(s)	413
BpuEI	CTTGAG	1 cut(s)	123
Bsa29I	ATCGAT	1 cut(s)	82
BsaAI	YACGTR	2 cut(s)	606, 825
BsaI	GGTCTC	1 cut(s)	42
Bse1I	ACTGG	3 cut(s)	107, 221, 419
BseCI	ATCGAT	1 cut(s)	82
BseGI	GGATG	2 cut(s)	322, 1045
BseNI	ACTGG	3 cut(s)	107, 221, 419
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	2 cut(s)	573, 576
BshFI	GGCC	1 cut(s)	76
BshNI	GGYRCC	1 cut(s)	57
BshVI	ATCGAT	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	76
Bso31I	GGTCTC	1 cut(s)	42
BspANI	GGCC	1 cut(s)	76
BspDI	ATCGAT	1 cut(s)	82
BspLI	GGNNCC	3 cut(s)	59, 705, 924
BspMAI	CTGCAG	1 cut(s)	1033
BspMI	ACCTGC	2 cut(s)	760, 982
BspPI	GGATC	6 cut(s)	76, 245, 623, 728, 842, 947
BspT107I	GGYRCC	1 cut(s)	57
BspTNI	GGTCTC	1 cut(s)	42
BsrI	ACTGG	3 cut(s)	107, 221, 419
BssSI	CACGAG	1 cut(s)	441
Bst2BI	CACGAG	1 cut(s)	441
Bst4CI	ACNGT	1 cut(s)	380
Bst6I	CTCTTC	3 cut(s)	46, 240, 249
BstBAI	YACGTR	2 cut(s)	606, 825
BstC8I	GCNNGC	1 cut(s)	1029
BstF5I	GGATG	2 cut(s)	322, 1045
BstHHI	GCGC	3 cut(s)	757, 914, 979
BstMAI	GTCTC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	2 cut(s)	1010, 1024
BstNSI	RCATGY	4 cut(s)	197, 761, 983, 1008
BstSFI	CTRYAG	3 cut(s)	708, 927, 1029
BstV1I	GCAGC	2 cut(s)	573, 576
BstX2I	RGATCY	3 cut(s)	68, 628, 847
BstYI	RGATCY	3 cut(s)	68, 628, 847
Bsu15I	ATCGAT	1 cut(s)	82
BsuI	GTATCC	2 cut(s)	15, 92
BsuRI	GGCC	1 cut(s)	76
BsuTUI	ATCGAT	1 cut(s)	82
BtsCI	GGATG	2 cut(s)	322, 1045
BveI	ACCTGC	2 cut(s)	760, 982
Cac8I	GCNNGC	1 cut(s)	1029
CfoI	GCGC	3 cut(s)	757, 914, 979
Cfr13I	GGNCC	1 cut(s)	269
ClaI	ATCGAT	1 cut(s)	82
Csp6I	GTAC	5 cut(s)	31, 58, 413, 607, 826
CviAII	CATG	8 cut(s)	194, 227, 307, 473, 758, 980, 1005, 1055
CviJI	RGCY	9 cut(s)	76, 137, 464, 522, 706, 925, 1013, 1018, 1027
CviKI_1	RGCY	9 cut(s)	76, 137, 464, 522, 706, 925, 1013, 1018, 1027
CviQI	GTAC	5 cut(s)	31, 58, 413, 607, 826
Eam1104I	CTCTTC	3 cut(s)	46, 240, 249
EarI	CTCTTC	3 cut(s)	46, 240, 249
Eco31I	GGTCTC	1 cut(s)	42
Eco32I	GATATC	2 cut(s)	723, 942
Eco47I	GGWCC	1 cut(s)	269
EcoRV	GATATC	2 cut(s)	723, 942
EcoT22I	ATGCAT	2 cut(s)	171, 228
FaeI	CATG	8 cut(s)	197, 230, 310, 476, 761, 983, 1008, 1058
FatI	CATG	8 cut(s)	193, 226, 306, 472, 757, 979, 1004, 1054
FbaI	TGATCA	1 cut(s)	1051
Fnu4HI	GCNGC	2 cut(s)	562, 565
FokI	GGATG	2 cut(s)	329, 1052
Fsp4HI	GCNGC	2 cut(s)	562, 565
FspI	TGCGCA	3 cut(s)	756, 913, 978
GlaI	GCGC	3 cut(s)	756, 913, 978
GluI	GCNGC	2 cut(s)	562, 565
HaeIII	GGCC	1 cut(s)	76
HhaI	GCGC	3 cut(s)	757, 914, 979
Hin1II	CATG	8 cut(s)	197, 230, 310, 476, 761, 983, 1008, 1058
Hin6I	GCGC	3 cut(s)	755, 912, 977
HinP1I	GCGC	3 cut(s)	755, 912, 977
HinfI	GANTC	7 cut(s)	159, 554, 577, 622, 645, 796, 841
HphI	GGTGA	3 cut(s)	158, 305, 1058
Hpy188I	TCNGA	7 cut(s)	9, 394, 727, 764, 787, 946, 986
Hpy99I	CGWCG	1 cut(s)	859
HpyAV	CCTTC	5 cut(s)	48, 100, 179, 290, 1037
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4IV	ACGT	2 cut(s)	605, 824
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1010, 1024
HpySE526I	ACGT	2 cut(s)	605, 824
Hsp92II	CATG	8 cut(s)	197, 230, 310, 476, 761, 983, 1008, 1058
HspAI	GCGC	3 cut(s)	755, 912, 977
KpnI	GGTACC	1 cut(s)	61
Ksp22I	TGATCA	1 cut(s)	1051
LmnI	GCTCC	2 cut(s)	703, 922
Lsp1109I	GCAGC	2 cut(s)	573, 576
LweI	GCATC	3 cut(s)	178, 603, 822
MaeII	ACGT	2 cut(s)	605, 824
MaeIII	GTNAC	6 cut(s)	421, 430, 639, 747, 858, 969
MboII	GAAGA	9 cut(s)	33, 161, 257, 266, 361, 645, 666, 864, 885
MflI	RGATCY	3 cut(s)	68, 628, 847
MluCI	AATT	9 cut(s)	12, 21, 153, 176, 352, 397, 458, 506, 698
MlyI	GAGTC	2 cut(s)	631, 850
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	6 cut(s)	282, 285, 303, 511, 721, 940
Mph1103I	ATGCAT	2 cut(s)	171, 228
MroXI	GAANNNNTTC	1 cut(s)	353
MwoI	GCNNNNNNNGC	2 cut(s)	1010, 1024
NlaIII	CATG	8 cut(s)	197, 230, 310, 476, 761, 983, 1008, 1058
NlaIV	GGNNCC	3 cut(s)	59, 705, 924
NmeAIII	GCCGAG	2 cut(s)	52, 1039
NmuCI	GTSAC	2 cut(s)	639, 858
NsbI	TGCGCA	3 cut(s)	756, 913, 978
NsiI	ATGCAT	2 cut(s)	171, 228
NspI	RCATGY	4 cut(s)	197, 761, 983, 1008
PcsI	WCGNNNNNNNCGW	1 cut(s)	79
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	5 cut(s)	159, 554, 577, 645, 796
PkrI	GCNGC	2 cut(s)	563, 566
PleI	GAGTC	2 cut(s)	630, 849
PpsI	GAGTC	2 cut(s)	630, 849
Ppu21I	YACGTR	2 cut(s)	606, 825
PspN4I	GGNNCC	3 cut(s)	59, 705, 924
PspPI	GGNCC	1 cut(s)	269
PstI	CTGCAG	1 cut(s)	1033
PsuI	RGATCY	3 cut(s)	68, 628, 847
RsaI	GTAC	5 cut(s)	32, 59, 414, 608, 827
RsaNI	GTAC	5 cut(s)	31, 58, 413, 607, 826
SatI	GCNGC	2 cut(s)	562, 565
Sau96I	GGNCC	1 cut(s)	269
ScaI	AGTACT	1 cut(s)	414
SchI	GAGTC	2 cut(s)	631, 850
SfaNI	GCATC	3 cut(s)	178, 603, 822
SfcI	CTRYAG	3 cut(s)	708, 927, 1029
SinI	GGWCC	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
Sse9I	AATT	9 cut(s)	12, 21, 153, 176, 352, 397, 458, 506, 698
TaaI	ACNGT	1 cut(s)	380
TaiI	ACGT	2 cut(s)	608, 827
TaqI	TCGA	6 cut(s)	82, 510, 625, 732, 844, 951
TaqII	GACCGA	1 cut(s)	66
TasI	AATT	9 cut(s)	12, 21, 153, 176, 352, 397, 458, 506, 698
TatI	WGTACW	1 cut(s)	412
TfiI	GAWTC	5 cut(s)	159, 554, 577, 645, 796
TseFI	GTSAC	2 cut(s)	639, 858
TseI	GCWGC	2 cut(s)	561, 564
Tsp45I	GTSAC	2 cut(s)	639, 858
TspDTI	ATGAA	5 cut(s)	198, 243, 267, 489, 1056
TspGWI	ACGGA	2 cut(s)	648, 867
VpaK11BI	GGWCC	1 cut(s)	269
XapI	RAATTY	2 cut(s)	176, 352
XceI	RCATGY	4 cut(s)	197, 761, 983, 1008
XmnI	GAANNNNTTC	1 cut(s)	353
ZrmI	AGTACT	1 cut(s)	414
Zsp2I	ATGCAT	2 cut(s)	171, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.