RLG00000023396
NAC Family

NAC domain-containing protein 67-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002868
Physical Location & Seq
Reverse (-)
23055661 .. 23057441
1781 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023396

Sequence Viewer

Length: 1296 bp
ATGGTTCCAAACAATCAGCAAAGTGATACGATGTCTGATGGAGAGATTGATGATTATTTTAGATCTTTTCCACCAGGTTATCAATTTGTCCCCACTGATGCAGAGTTGATTATATATTATTTGAAGAGAAAGATCTTGAATCAACAACTACCCATGAACCGGATTCGTGATGAGAATATTTATCACCACCATCCTCAAACTCTTGCTGAAATGTATCCGAGAATTAGAGAAATTGAATGGTACTTTTTCTCTTCTAGAGACCGAAGGTACCCCAATGGATCTCGGCCTAATCGATCAGCACAAGGTGGATACTGGAAGGCAACGAAAAGAGATGAGATCATCACAGCTCAAGGTGGTGAAGAAATTGGATTCAAAATGCATCTGGAATTTTATGAAGGAACACATGCACAAGGTAGAAAGACAAACTGGAAAATGCATGAATATAGGATCAAAGAAGAGAATGAAGAGAATGATATTGGTCCTCCTCAAAATACCAACAAGGGTGAAGGTATCAGCATGAGGTTGGATGATTGGGTTTTGTATAAGATTTACATAAAGAAGAATTTCAAGGCTGATACAGACAGCAACAGCTTAAAGACACCAGACAATTCTGATCAAGTAGTACTCCCAGTAACAAATGTTACAACATCTCGTGATTGTCAAAATAAATTAGCTATTCAGCATGAAGTTCAAGATCAATCTCTCAATGCCTCACAGTTCGACCACAATGGCTTCTCAACTTTGACGAACTATCGTGATGTAGGATCCAGCAGCAGCAACTTCTGGAATCAAAACTATACAGATGATTACGACACGTACATCATGCAGATGAGTCGAGATCCATCATCGTCACCATTCTTTTCTTCTCCGTTTCCCTTGCAATCTTCAACAGACCAGATTTGCGCAGGATTGGAGCCTGTAGATGATAAGATATCAGAGGTCGATCCAAGTTCTATGTTACCTGCGCATGTCAGAGAATGTGATGAGAATATGTCAGAGAATGAGAATATGTCAGAGAATAAGAATCAAAACTATACAGATGATTACGATCACACGTACTGGATGCAGATGAGTCGAGATCCATCGTCGTCACGATTATTTTCTTCTCCGTTTCCCTTGCAATCTTCAACAGACCAGATTTGCGCAGGATTGGAGCCTGTAGATGATAAGATATCAGAGGTCGATCCAAGTTCTATTGTGTTAACTGCGCATGTCAGAGAATATGATAATCGTGCATGTAAAGCCGAGCCTATTCAGCCTGTTAGGGATGAAGGTGATGATCATGTGTCTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

432

Amino Acids

49.86

Weight (kDa)

4.82

Isoelectric Point (pI)

58.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 24 - 150 1e-38 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 4 cut(s) 904, 966, 1144, 1209
Acc36I ACCTGC 1 cut(s) 970
Acc65I GGTACC 1 cut(s) 267
AccB1I GGYRCC 1 cut(s) 267
AclWI GGATC 8 cut(s) 286, 455, 759, 772, 833, 938, 1073, 1178
AcsI RAATTY 2 cut(s) 386, 562
AdeI CACNNNGTG 1 cut(s) 305
AfaI GTAC 5 cut(s) 242, 269, 624, 818, 1058
AfiI CCNNNNNNNGG 1 cut(s) 159
AflIII ACRYGT 2 cut(s) 813, 1053
AgsI TTSAA 8 cut(s) 124, 139, 236, 373, 568, 692, 888, 1128
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 3 cut(s) 347, 591, 674
AluI AGCT 3 cut(s) 347, 591, 674
Alw26I GTCTC 1 cut(s) 252
AlwI GGATC 8 cut(s) 286, 455, 759, 772, 833, 938, 1073, 1178
AoxI GGCC 1 cut(s) 284
ApeKI GCWGC 2 cut(s) 771, 774
ApoI RAATTY 2 cut(s) 386, 562
Asp700I GAANNNNTTC 1 cut(s) 563
Asp718I GGTACC 1 cut(s) 267
AspLEI GCGC 4 cut(s) 905, 967, 1145, 1210
AspS9I GGNCC 1 cut(s) 479
AsuHPI GGTGA 5 cut(s) 176, 368, 515, 843, 1286
AvaII GGWCC 1 cut(s) 479
BamHI GGATCC 1 cut(s) 764
BanI GGYRCC 1 cut(s) 267
BauI CACGAG 1 cut(s) 651
BbvI GCAGC 2 cut(s) 783, 786
BccI CCATC 4 cut(s) 32, 198, 850, 1090
BcgI CGANNNNNNTGC 4 cut(s) 815, 849, 1055, 1089
BciT130I CCWGG 1 cut(s) 75
BciVI GTATCC 2 cut(s) 225, 302
BclI TGATCA 2 cut(s) 613, 1279
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 1 cut(s) 255
BfmI CTRYAG 2 cut(s) 918, 1158
BfuAI ACCTGC 1 cut(s) 970
BfuI GTATCC 2 cut(s) 225, 302
BglII AGATCT 2 cut(s) 62, 132
BisI GCNGC 2 cut(s) 772, 775
BlsI GCNGC 2 cut(s) 773, 776
BmcAI AGTACT 1 cut(s) 624
Bme1390I CCNGG 1 cut(s) 75
Bme18I GGWCC 1 cut(s) 479
BmgT120I GGNCC 1 cut(s) 479
BmiI GGNNCC 5 cut(s) 6, 269, 766, 915, 1155
BmrFI CCNGG 1 cut(s) 75
BmrI ACTGGG 1 cut(s) 623
BmsI GCATC 3 cut(s) 88, 388, 1053
BmuI ACTGGG 1 cut(s) 623
BpuEI CTTGAG 1 cut(s) 333
Bsa29I ATCGAT 1 cut(s) 292
BsaAI YACGTR 2 cut(s) 816, 1056
BsaBI GATNNNNATC 1 cut(s) 1047
BsaI GGTCTC 1 cut(s) 252
BsaWI WCCGGW 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse1I ACTGG 4 cut(s) 317, 431, 629, 1064
Bse8I GATNNNNATC 1 cut(s) 1047
BseBI CCWGG 1 cut(s) 75
BseCI ATCGAT 1 cut(s) 292
BseGI GGATG 4 cut(s) 190, 532, 1068, 1273
BseJI GATNNNNATC 1 cut(s) 1047
BseLI CCNNNNNNNGG 1 cut(s) 159
BseNI ACTGG 4 cut(s) 317, 431, 629, 1064
BseRI GAGGAG 1 cut(s) 474
BseXI GCAGC 2 cut(s) 783, 786
BshFI GGCC 1 cut(s) 286
BshNI GGYRCC 1 cut(s) 267
BshVI ATCGAT 1 cut(s) 292
BsiSI CCGG 1 cut(s) 160
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 159
BsmAI GTCTC 1 cut(s) 252
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 1 cut(s) 286
Bso31I GGTCTC 1 cut(s) 252
BspANI GGCC 1 cut(s) 286
BspDI ATCGAT 1 cut(s) 292
BspLI GGNNCC 5 cut(s) 6, 269, 766, 915, 1155
BspMI ACCTGC 1 cut(s) 970
BspPI GGATC 8 cut(s) 286, 455, 759, 772, 833, 938, 1073, 1178
BspT107I GGYRCC 1 cut(s) 267
BspTNI GGTCTC 1 cut(s) 252
BsrI ACTGG 4 cut(s) 317, 431, 629, 1064
BssSI CACGAG 1 cut(s) 651
Bst2BI CACGAG 1 cut(s) 651
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 717
Bst6I CTCTTC 4 cut(s) 119, 256, 450, 459
BstBAI YACGTR 2 cut(s) 816, 1056
BstF5I GGATG 4 cut(s) 190, 532, 1068, 1273
BstHHI GCGC 4 cut(s) 905, 967, 1145, 1210
BstMAI GTCTC 1 cut(s) 252
BstMWI GCNNNNNNNGC 2 cut(s) 1241, 1255
BstNI CCWGG 1 cut(s) 75
BstNSI RCATGY 4 cut(s) 407, 971, 1214, 1239
BstSCI CCNGG 1 cut(s) 73
BstSFI CTRYAG 2 cut(s) 918, 1158
BstV1I GCAGC 2 cut(s) 783, 786
BstX2I RGATCY 6 cut(s) 62, 132, 278, 764, 838, 1078
BstYI RGATCY 6 cut(s) 62, 132, 278, 764, 838, 1078
Bsu15I ATCGAT 1 cut(s) 292
BsuI GTATCC 2 cut(s) 225, 302
BsuRI GGCC 1 cut(s) 286
BsuTUI ATCGAT 1 cut(s) 292
BtsCI GGATG 4 cut(s) 190, 532, 1068, 1273
BtsIMutI CAGTG 1 cut(s) 93
BveI ACCTGC 1 cut(s) 970
CfoI GCGC 4 cut(s) 905, 967, 1145, 1210
Cfr13I GGNCC 1 cut(s) 479
ClaI ATCGAT 1 cut(s) 292
CsiI ACCWGGT 1 cut(s) 73
Csp6I GTAC 5 cut(s) 241, 268, 623, 817, 1057
CviQI GTAC 5 cut(s) 241, 268, 623, 817, 1057
DraIII CACNNNGTG 1 cut(s) 305
Eam1104I CTCTTC 4 cut(s) 119, 256, 450, 459
EarI CTCTTC 4 cut(s) 119, 256, 450, 459
Eco31I GGTCTC 1 cut(s) 252
Eco32I GATATC 2 cut(s) 933, 1173
Eco47I GGWCC 1 cut(s) 479
EcoRII CCWGG 1 cut(s) 73
EcoRV GATATC 2 cut(s) 933, 1173
EcoT22I ATGCAT 2 cut(s) 381, 438
FaqI GGGAC 1 cut(s) 74
FbaI TGATCA 2 cut(s) 613, 1279
Fnu4HI GCNGC 2 cut(s) 772, 775
FokI GGATG 4 cut(s) 177, 539, 1075, 1280
Fsp4HI GCNGC 2 cut(s) 772, 775
FspBI CTAG 1 cut(s) 255
FspI TGCGCA 4 cut(s) 904, 966, 1144, 1209
GlaI GCGC 4 cut(s) 904, 966, 1144, 1209
GluI GCNGC 2 cut(s) 772, 775
HaeIII GGCC 1 cut(s) 286
HapII CCGG 1 cut(s) 160
HhaI GCGC 4 cut(s) 905, 967, 1145, 1210
Hin6I GCGC 4 cut(s) 903, 965, 1143, 1208
HinP1I GCGC 4 cut(s) 903, 965, 1143, 1208
HincII GTYRAC 1 cut(s) 1203
HindII GTYRAC 1 cut(s) 1203
HinfI GANTC 7 cut(s) 139, 163, 369, 787, 832, 1024, 1072
HpaI GTTAAC 1 cut(s) 1203
HpaII CCGG 1 cut(s) 160
HphI GGTGA 5 cut(s) 176, 368, 515, 843, 1286
Hpy166II GTNNAC 1 cut(s) 1203
Hpy188I TCNGA 9 cut(s) 37, 219, 613, 937, 974, 997, 1015, 1177, 1217
Hpy8I GTNNAC 1 cut(s) 1203
Hpy99I CGWCG 1 cut(s) 1090
HpyAV CCTTC 5 cut(s) 258, 310, 389, 500, 1265
HpyCH4III ACNGT 1 cut(s) 717
HpyCH4IV ACGT 2 cut(s) 815, 1055
HpyCH4V TGCA 9 cut(s) 101, 379, 407, 436, 826, 880, 1066, 1120, 1235
HpyF10VI GCNNNNNNNGC 2 cut(s) 1241, 1255
HpySE526I ACGT 2 cut(s) 815, 1055
HspAI GCGC 4 cut(s) 903, 965, 1143, 1208
KpnI GGTACC 1 cut(s) 271
Ksp22I TGATCA 2 cut(s) 613, 1279
KspAI GTTAAC 1 cut(s) 1203
LmnI GCTCC 2 cut(s) 913, 1153
Lsp1109I GCAGC 2 cut(s) 783, 786
LweI GCATC 3 cut(s) 88, 388, 1053
MabI ACCWGGT 1 cut(s) 73
MaeI CTAG 1 cut(s) 255
MaeII ACGT 2 cut(s) 815, 1055
MaeIII GTNAC 5 cut(s) 631, 640, 849, 957, 1089
MflI RGATCY 6 cut(s) 62, 132, 278, 764, 838, 1078
MluCI AATT 8 cut(s) 83, 222, 231, 363, 386, 562, 607, 668
MlyI GAGTC 2 cut(s) 841, 1081
MmeI TCCRAC 1 cut(s) 504
MnlI CCTC 7 cut(s) 204, 492, 495, 513, 721, 931, 1171
Mph1103I ATGCAT 2 cut(s) 381, 438
MroXI GAANNNNTTC 1 cut(s) 563
MseI TTAA 2 cut(s) 593, 1202
MslI CAYNNNNRTG 1 cut(s) 827
MspI CCGG 1 cut(s) 160
MspR9I CCNGG 1 cut(s) 75
MvaI CCWGG 1 cut(s) 75
MwoI GCNNNNNNNGC 2 cut(s) 1241, 1255
NlaIV GGNNCC 5 cut(s) 6, 269, 766, 915, 1155
NmeAIII GCCGAG 2 cut(s) 262, 1270
NmuCI GTSAC 2 cut(s) 849, 1089
NsbI TGCGCA 4 cut(s) 904, 966, 1144, 1209
NsiI ATGCAT 2 cut(s) 381, 438
NspI RCATGY 4 cut(s) 407, 971, 1214, 1239
PcsI WCGNNNNNNNCGW 1 cut(s) 289
PdmI GAANNNNTTC 1 cut(s) 563
PfeI GAWTC 5 cut(s) 139, 163, 369, 787, 1024
PkrI GCNGC 2 cut(s) 773, 776
PleI GAGTC 2 cut(s) 840, 1080
PpsI GAGTC 2 cut(s) 840, 1080
Ppu21I YACGTR 2 cut(s) 816, 1056
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 5 cut(s) 6, 269, 766, 915, 1155
PspPI GGNCC 1 cut(s) 479
PsuI RGATCY 6 cut(s) 62, 132, 278, 764, 838, 1078
RsaI GTAC 5 cut(s) 242, 269, 624, 818, 1058
RsaNI GTAC 5 cut(s) 241, 268, 623, 817, 1057
RseI CAYNNNNRTG 1 cut(s) 827
SaqAI TTAA 2 cut(s) 593, 1202
SatI GCNGC 2 cut(s) 772, 775
Sau96I GGNCC 1 cut(s) 479
ScaI AGTACT 1 cut(s) 624
SchI GAGTC 2 cut(s) 841, 1081
ScrFI CCNGG 1 cut(s) 75
SexAI ACCWGGT 1 cut(s) 73
SfaNI GCATC 3 cut(s) 88, 388, 1053
SfcI CTRYAG 2 cut(s) 918, 1158
SinI GGWCC 1 cut(s) 479
SmiMI CAYNNNNRTG 1 cut(s) 827
SmlI CTYRAG 1 cut(s) 348
SmoI CTYRAG 1 cut(s) 348
Sse9I AATT 8 cut(s) 83, 222, 231, 363, 386, 562, 607, 668
SspI AATATT 1 cut(s) 178
SspMI CTAG 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 73
TaaI ACNGT 1 cut(s) 717
TaiI ACGT 2 cut(s) 818, 1058
TaqI TCGA 6 cut(s) 292, 720, 835, 942, 1075, 1182
TaqII GACCGA 1 cut(s) 276
TasI AATT 8 cut(s) 83, 222, 231, 363, 386, 562, 607, 668
TatI WGTACW 1 cut(s) 622
TfiI GAWTC 5 cut(s) 139, 163, 369, 787, 1024
Tru1I TTAA 2 cut(s) 593, 1202
Tru9I TTAA 2 cut(s) 593, 1202
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 2 cut(s) 849, 1089
TseI GCWGC 2 cut(s) 771, 774
Tsp45I GTSAC 2 cut(s) 849, 1089
TspDTI ATGAA 6 cut(s) 170, 408, 453, 477, 699, 1284
TspGWI ACGGA 2 cut(s) 858, 1098
TspRI CASTG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 479
XapI RAATTY 2 cut(s) 386, 562
XbaI TCTAGA 1 cut(s) 254
XceI RCATGY 4 cut(s) 407, 971, 1214, 1239
XmnI GAANNNNTTC 1 cut(s) 563
XspI CTAG 1 cut(s) 255
ZrmI AGTACT 1 cut(s) 624
Zsp2I ATGCAT 2 cut(s) 381, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.