Rh3DG270100
NAC Family

NAC domain-containing protein 67-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002868
Physical Location & Seq
Forward (+)
27021196 .. 27022879
1684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG270100.1

Sequence Viewer

Length: 879 bp
ATGGTTCCAAACAATCAGCAAAGTGATACGATGTCTGATGGAGAGATTGATGATTATTTTAGATCTTTTCCACCAGGTTATCAATTTGTCCCCACTGATGCAGAGTTGATTATATATTATTTGAAGAGAAAGATCTTGAATCAACAACTACCCGTGAACCGGATTCGTGATGAGAATATTTATCACTACCATCCTCAAACTCTTGCTGAAATGTATCCGAGAATTAGAGAAATTGAATGGTACTTTTTCTCTTCCAGAGACCGAAGGTACCCCAATGGATCTCGGCCTAATCGATCAGCAAAAGGTGGATACTGGAAGGCAACGAAAAGAGATGAGATCATCACAGCTCAAGGTGGTGAAGAAATTGGATTCAAAATGCATCTGGAATTTTATGAAGGAACACATGCACAAGGTAGAAAGACAAACTGGAAAATGCATGAATATAGGATCAAAGAAGAGAATGAAGAGAATGATATTGGTCCTCCTCAAAATACCAACAAGGGTGAAGGTATCAGCATGAGGTTGGATGATTGGGTTTTGTGTAAGATTTACATAAAGAAGAATTTCAAGGTTGATACAGACAGCAACAGTTCAAAGACATCAGACAATTCTGATCAAGTAGTACTCCCAGTAACAAATGTTACAACATCTCGTGATTGTCAAAATAAATTAGCTATTCAGCATGAAGTTCAAGATCAATCTCTCAATGCCTCACAATTCGACCACAATGGCTTCTCAACTTTGACGAACTATCGTGATGTAGAATCCAGCAGCAGCAACTTCTGGAATCAAAACTACACAGATGATTACGACACGTACTTGATGCAGATCAGTGGCGGAACCAGGATTTGTAAGTTGGGGGGGTCGAGAAAAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

292

Amino Acids

34.11

Weight (kDa)

6.02

Isoelectric Point (pI)

46.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 24 - 150 3.6e-39 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 267
AccB1I GGYRCC 1 cut(s) 267
AciI CCGC 1 cut(s) 837
AclWI GGATC 2 cut(s) 286, 455
AcsI RAATTY 2 cut(s) 386, 562
AfaI GTAC 4 cut(s) 242, 269, 624, 818
AfiI CCNNNNNNNGG 1 cut(s) 159
AflIII ACRYGT 1 cut(s) 813
AgsI TTSAA 7 cut(s) 124, 139, 236, 373, 568, 594, 692
AjnI CCWGG 2 cut(s) 73, 842
AluBI AGCT 2 cut(s) 347, 674
AluI AGCT 2 cut(s) 347, 674
Alw26I GTCTC 1 cut(s) 252
AlwI GGATC 2 cut(s) 286, 455
AoxI GGCC 1 cut(s) 284
ApeKI GCWGC 2 cut(s) 771, 774
ApoI RAATTY 2 cut(s) 386, 562
Asp700I GAANNNNTTC 1 cut(s) 563
Asp718I GGTACC 1 cut(s) 267
AspS9I GGNCC 1 cut(s) 479
AsuHPI GGTGA 2 cut(s) 368, 515
AvaII GGWCC 1 cut(s) 479
BanI GGYRCC 1 cut(s) 267
BauI CACGAG 1 cut(s) 651
BbvI GCAGC 2 cut(s) 783, 786
BccI CCATC 2 cut(s) 32, 198
BciT130I CCWGG 2 cut(s) 75, 844
BciVI GTATCC 2 cut(s) 225, 302
BclI TGATCA 1 cut(s) 613
BcoDI GTCTC 1 cut(s) 252
BfuI GTATCC 2 cut(s) 225, 302
BglII AGATCT 2 cut(s) 62, 132
BisI GCNGC 2 cut(s) 772, 775
BlsI GCNGC 2 cut(s) 773, 776
BmcAI AGTACT 1 cut(s) 624
Bme1390I CCNGG 2 cut(s) 75, 844
Bme18I GGWCC 1 cut(s) 479
BmgT120I GGNCC 1 cut(s) 479
BmiI GGNNCC 3 cut(s) 6, 269, 841
BmrFI CCNGG 2 cut(s) 75, 844
BmrI ACTGGG 1 cut(s) 623
BmsI GCATC 3 cut(s) 88, 388, 813
BmuI ACTGGG 1 cut(s) 623
BpuEI CTTGAG 1 cut(s) 333
Bsa29I ATCGAT 1 cut(s) 292
BsaAI YACGTR 1 cut(s) 816
BsaBI GATNNNNATC 1 cut(s) 827
BsaI GGTCTC 1 cut(s) 252
BsaWI WCCGGW 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse1I ACTGG 3 cut(s) 317, 431, 629
Bse8I GATNNNNATC 1 cut(s) 827
BseBI CCWGG 2 cut(s) 75, 844
BseCI ATCGAT 1 cut(s) 292
BseGI GGATG 2 cut(s) 190, 532
BseJI GATNNNNATC 1 cut(s) 827
BseLI CCNNNNNNNGG 1 cut(s) 159
BseNI ACTGG 3 cut(s) 317, 431, 629
BseRI GAGGAG 1 cut(s) 474
BseXI GCAGC 2 cut(s) 783, 786
BshFI GGCC 1 cut(s) 286
BshNI GGYRCC 1 cut(s) 267
BshVI ATCGAT 1 cut(s) 292
BsiSI CCGG 1 cut(s) 160
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 159
BsmAI GTCTC 1 cut(s) 252
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 1 cut(s) 286
Bso31I GGTCTC 1 cut(s) 252
Bsp143I GATC 9 cut(s) 62, 132, 278, 293, 336, 447, 613, 694, 828
BspACI CCGC 1 cut(s) 837
BspANI GGCC 1 cut(s) 286
BspDI ATCGAT 1 cut(s) 292
BspLI GGNNCC 3 cut(s) 6, 269, 841
BspPI GGATC 2 cut(s) 286, 455
BspT107I GGYRCC 1 cut(s) 267
BspTNI GGTCTC 1 cut(s) 252
BsrI ACTGG 3 cut(s) 317, 431, 629
BssMI GATC 9 cut(s) 62, 132, 278, 293, 336, 447, 613, 694, 828
BssSI CACGAG 1 cut(s) 651
Bst2BI CACGAG 1 cut(s) 651
Bst2UI CCWGG 2 cut(s) 75, 844
Bst4CI ACNGT 1 cut(s) 590
Bst6I CTCTTC 4 cut(s) 119, 256, 450, 459
BstBAI YACGTR 1 cut(s) 816
BstF5I GGATG 2 cut(s) 190, 532
BstKTI GATC 9 cut(s) 65, 135, 281, 296, 339, 450, 616, 697, 831
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 9 cut(s) 62, 132, 278, 293, 336, 447, 613, 694, 828
BstNI CCWGG 2 cut(s) 75, 844
BstNSI RCATGY 1 cut(s) 407
BstSCI CCNGG 2 cut(s) 73, 842
BstV1I GCAGC 2 cut(s) 783, 786
BstX2I RGATCY 3 cut(s) 62, 132, 278
BstYI RGATCY 3 cut(s) 62, 132, 278
Bsu15I ATCGAT 1 cut(s) 292
BsuI GTATCC 2 cut(s) 225, 302
BsuRI GGCC 1 cut(s) 286
BsuTUI ATCGAT 1 cut(s) 292
BtsCI GGATG 2 cut(s) 190, 532
BtsIMutI CAGTG 2 cut(s) 93, 838
Cfr13I GGNCC 1 cut(s) 479
ClaI ATCGAT 1 cut(s) 292
CsiI ACCWGGT 1 cut(s) 73
Csp6I GTAC 4 cut(s) 241, 268, 623, 817
CviAII CATG 4 cut(s) 404, 437, 517, 683
CviJI RGCY 4 cut(s) 286, 347, 674, 732
CviKI_1 RGCY 4 cut(s) 286, 347, 674, 732
CviQI GTAC 4 cut(s) 241, 268, 623, 817
DpnI GATC 9 cut(s) 64, 134, 280, 295, 338, 449, 615, 696, 830
DpnII GATC 9 cut(s) 62, 132, 278, 293, 336, 447, 613, 694, 828
Eam1104I CTCTTC 4 cut(s) 119, 256, 450, 459
EarI CTCTTC 4 cut(s) 119, 256, 450, 459
EciI GGCGGA 1 cut(s) 852
Eco31I GGTCTC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 479
EcoRII CCWGG 2 cut(s) 73, 842
EcoT22I ATGCAT 2 cut(s) 381, 438
FaeI CATG 4 cut(s) 407, 440, 520, 686
FaqI GGGAC 1 cut(s) 74
FatI CATG 4 cut(s) 403, 436, 516, 682
FbaI TGATCA 1 cut(s) 613
Fnu4HI GCNGC 2 cut(s) 772, 775
FokI GGATG 2 cut(s) 177, 539
Fsp4HI GCNGC 2 cut(s) 772, 775
GluI GCNGC 2 cut(s) 772, 775
HaeIII GGCC 1 cut(s) 286
HapII CCGG 1 cut(s) 160
Hin1II CATG 4 cut(s) 407, 440, 520, 686
HinfI GANTC 5 cut(s) 139, 163, 369, 764, 787
HpaII CCGG 1 cut(s) 160
HphI GGTGA 2 cut(s) 368, 515
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 4 cut(s) 37, 219, 604, 613
Hpy188III TCNNGA 9 cut(s) 136, 167, 255, 383, 653, 692, 755, 784, 867
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 4 cut(s) 258, 310, 389, 500
HpyCH4III ACNGT 1 cut(s) 590
HpyCH4IV ACGT 1 cut(s) 815
HpyCH4V TGCA 5 cut(s) 101, 379, 407, 436, 826
HpySE526I ACGT 1 cut(s) 815
Hsp92II CATG 4 cut(s) 407, 440, 520, 686
KpnI GGTACC 1 cut(s) 271
Ksp22I TGATCA 1 cut(s) 613
Kzo9I GATC 9 cut(s) 62, 132, 278, 293, 336, 447, 613, 694, 828
Lsp1109I GCAGC 2 cut(s) 783, 786
LweI GCATC 3 cut(s) 88, 388, 813
MabI ACCWGGT 1 cut(s) 73
MaeII ACGT 1 cut(s) 815
MaeIII GTNAC 2 cut(s) 631, 640
MalI GATC 9 cut(s) 64, 134, 280, 295, 338, 449, 615, 696, 830
MboI GATC 9 cut(s) 62, 132, 278, 293, 336, 447, 613, 694, 828
MboII GAAGA 6 cut(s) 136, 243, 371, 467, 476, 571
MflI RGATCY 3 cut(s) 62, 132, 278
MluCI AATT 9 cut(s) 83, 222, 231, 363, 386, 562, 607, 668, 716
MmeI TCCRAC 1 cut(s) 504
MnlI CCTC 5 cut(s) 204, 492, 495, 513, 721
Mph1103I ATGCAT 2 cut(s) 381, 438
MroXI GAANNNNTTC 1 cut(s) 563
MspI CCGG 1 cut(s) 160
MspR9I CCNGG 2 cut(s) 75, 844
MvaI CCWGG 2 cut(s) 75, 844
NdeII GATC 9 cut(s) 62, 132, 278, 293, 336, 447, 613, 694, 828
NlaIII CATG 4 cut(s) 407, 440, 520, 686
NlaIV GGNNCC 3 cut(s) 6, 269, 841
NmeAIII GCCGAG 1 cut(s) 262
NsiI ATGCAT 2 cut(s) 381, 438
NspI RCATGY 1 cut(s) 407
PcsI WCGNNNNNNNCGW 1 cut(s) 289
PdmI GAANNNNTTC 1 cut(s) 563
PfeI GAWTC 5 cut(s) 139, 163, 369, 764, 787
PkrI GCNGC 2 cut(s) 773, 776
Ppu21I YACGTR 1 cut(s) 816
Psp6I CCWGG 2 cut(s) 73, 842
PspGI CCWGG 2 cut(s) 73, 842
PspN4I GGNNCC 3 cut(s) 6, 269, 841
PspPI GGNCC 1 cut(s) 479
PsuI RGATCY 3 cut(s) 62, 132, 278
RsaI GTAC 4 cut(s) 242, 269, 624, 818
RsaNI GTAC 4 cut(s) 241, 268, 623, 817
SatI GCNGC 2 cut(s) 772, 775
Sau3AI GATC 9 cut(s) 62, 132, 278, 293, 336, 447, 613, 694, 828
Sau96I GGNCC 1 cut(s) 479
ScaI AGTACT 1 cut(s) 624
ScrFI CCNGG 2 cut(s) 75, 844
SexAI ACCWGGT 1 cut(s) 73
SfaNI GCATC 3 cut(s) 88, 388, 813
SinI GGWCC 1 cut(s) 479
SmlI CTYRAG 1 cut(s) 348
SmoI CTYRAG 1 cut(s) 348
Sse9I AATT 9 cut(s) 83, 222, 231, 363, 386, 562, 607, 668, 716
SsiI CCGC 1 cut(s) 837
SspI AATATT 1 cut(s) 178
StyD4I CCNGG 2 cut(s) 73, 842
TaaI ACNGT 1 cut(s) 590
TaiI ACGT 1 cut(s) 818
TaqI TCGA 3 cut(s) 292, 720, 866
TaqII GACCGA 1 cut(s) 276
TasI AATT 9 cut(s) 83, 222, 231, 363, 386, 562, 607, 668, 716
TatI WGTACW 1 cut(s) 622
TfiI GAWTC 5 cut(s) 139, 163, 369, 764, 787
TscAI CASTG 2 cut(s) 100, 838
TseI GCWGC 2 cut(s) 771, 774
TspDTI ATGAA 4 cut(s) 408, 453, 477, 699
TspRI CASTG 2 cut(s) 100, 838
VpaK11BI GGWCC 1 cut(s) 479
XapI RAATTY 2 cut(s) 386, 562
XceI RCATGY 1 cut(s) 407
XmnI GAANNNNTTC 1 cut(s) 563
ZrmI AGTACT 1 cut(s) 624
Zsp2I ATGCAT 2 cut(s) 381, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.