Rh3BG278000
NAC Family

NAC domain-containing protein 67-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0002868
Physical Location & Seq
Forward (+)
27294635 .. 27296615
1981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG278000.1

Sequence Viewer

Length: 1026 bp
ATGGATCACTTGTTTCTTTCAATGGAGTCAAACTACCAAAAAAAACCTATGTTCATTGAAGATCCAGTTGACGTTTATTTGAATTCTCTTCCGCCCGGTTATCGATTTGCCCCTACCGATGCAGAGCTGATTCTATATTACTTGCAGAAAAAGATTTTGAAGCAGGAACTACCCCTTAACAAGATTCGTGAAATCGGTCTTTATCAATACGATCCTCAGTACCTTGCTGAGACGCAGTTGAACAGACATGGAGAAAGAGAATGGTACTTTTTCACTCCCAGGGAGCGAAAGTACCCCCATGGTTCACGCCCAAATCGAACAGCACACGATGGATTCTGGAAGGTAACTGGAAAAGATGAAGTCATTAGATCAGCTACAGGTGAAATAATTGGATACAAAAATACTCTTGATTACTTTGAAGGGACACATTCAGTAAACCAAAAGACCAAATGGAAAATGCATGAATATAGACTAAAAAAATCAGAGAGAGATGAAGATATTGCTGCTTCAAATAATGAAAAATGTCAACGTGATATGAAGTTGGATGATTGTGTTTTGTGTAAGATTTACACAAGTAACAGATGCAAGGCCGGGAAAAGCACCAAGAAAATTAGCAACAGTGCAAAGAAATCATTCAATTCTGTCCAAGATAGAGATGTTCAGCATGAAAATCAGGATCAACCAACTTTTGGTGGTGATTACAATTCCAATTCTCCCGCTGCATTTAACAATGGTTATGGTTCGACGAACAAATTTTGTGACCCTGCAAATCTTCCTCTGCAAGATCAAGCTTGTGGCGTCGCCCATCCTTCAGGACCCATCAATAACTTCAATAATCAAAACAATACAAATTACAACATGCACTCAAGTTCTTTGGAAGATCATGTCAGAGATTTTGAGCGTTGGTTAATTACAGCCACGAAGAAGCCAAAAAGTGATCATGTACCTGATGGAATACAGTCTTCTAACATGCCAGATGATACTCTAGGTGACAAAGTTCATCACGATCAATCCAAGAAGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

341

Amino Acids

39.37

Weight (kDa)

7.65

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 31 - 158 4.6e-39 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 689
AciI CCGC 2 cut(s) 92, 717
AclWI GGATC 4 cut(s) 12, 56, 206, 684
AcsI RAATTY 2 cut(s) 82, 752
AcuI CTGAAG 1 cut(s) 795
AcyI GRCGYC 1 cut(s) 798
AfaI GTAC 4 cut(s) 221, 266, 293, 945
AfiI CCNNNNNNNGG 1 cut(s) 689
AgsI TTSAA 9 cut(s) 21, 59, 82, 160, 241, 419, 510, 637, 832
AjnI CCWGG 1 cut(s) 278
AluBI AGCT 3 cut(s) 127, 374, 791
AluI AGCT 3 cut(s) 127, 374, 791
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 4 cut(s) 12, 56, 206, 684
AoxI GGCC 1 cut(s) 588
ApeKI GCWGC 2 cut(s) 503, 719
ApoI RAATTY 2 cut(s) 82, 752
Asp700I GAANNNNTTC 1 cut(s) 632
AspS9I GGNCC 1 cut(s) 815
AsuC2I CCSGG 2 cut(s) 96, 592
AsuHPI GGTGA 3 cut(s) 392, 707, 1001
AvaII GGWCC 1 cut(s) 815
BbsI GAAGAC 1 cut(s) 954
BbvI GCAGC 2 cut(s) 490, 706
BccI CCATC 4 cut(s) 323, 813, 827, 944
BciT130I CCWGG 1 cut(s) 280
BciVI GTATCC 1 cut(s) 386
BclI TGATCA 1 cut(s) 937
BcnI CCSGG 2 cut(s) 96, 592
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 1 cut(s) 986
BfmI CTRYAG 1 cut(s) 375
BfuI GTATCC 1 cut(s) 386
BisI GCNGC 2 cut(s) 504, 720
BlsI GCNGC 2 cut(s) 505, 721
Bme1390I CCNGG 3 cut(s) 96, 280, 592
Bme18I GGWCC 1 cut(s) 815
BmgT120I GGNCC 1 cut(s) 815
BmiI GGNNCC 1 cut(s) 817
BmrFI CCNGG 3 cut(s) 96, 280, 592
BmsI GCATC 2 cut(s) 109, 572
BpiI GAAGAC 1 cut(s) 954
BpuEI CTTGAG 1 cut(s) 850
BpuMI CCSGG 2 cut(s) 96, 592
Bsa29I ATCGAT 1 cut(s) 103
BsaHI GRCGYC 1 cut(s) 798
BsaJI CCNNGG 3 cut(s) 278, 279, 298
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 1 cut(s) 689
Bse1I ACTGG 2 cut(s) 65, 352
BseBI CCWGG 1 cut(s) 280
BseCI ATCGAT 1 cut(s) 103
BseDI CCNNGG 3 cut(s) 278, 279, 298
BseGI GGATG 2 cut(s) 550, 805
BseLI CCNNNNNNNGG 1 cut(s) 689
BseMII CTCAG 2 cut(s) 219, 230
BseNI ACTGG 2 cut(s) 65, 352
BseXI GCAGC 2 cut(s) 490, 706
BshFI GGCC 1 cut(s) 590
BshVI ATCGAT 1 cut(s) 103
BsiSI CCGG 2 cut(s) 96, 591
BslFI GGGAC 1 cut(s) 436
BslI CCNNNNNNNGG 1 cut(s) 689
BsmAI GTCTC 1 cut(s) 224
BsmBI CGTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 436
BsnI GGCC 1 cut(s) 590
Bsp143I GATC 9 cut(s) 4, 61, 211, 368, 676, 784, 880, 937, 1006
Bsp19I CCATGG 1 cut(s) 298
BspACI CCGC 2 cut(s) 92, 717
BspANI GGCC 1 cut(s) 590
BspCNI CTCAG 2 cut(s) 220, 229
BspDI ATCGAT 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 817
BspPI GGATC 4 cut(s) 12, 56, 206, 684
BsrI ACTGG 2 cut(s) 65, 352
BssECI CCNNGG 3 cut(s) 278, 279, 298
BssMI GATC 9 cut(s) 4, 61, 211, 368, 676, 784, 880, 937, 1006
BssNI GRCGYC 1 cut(s) 798
BssT1I CCWWGG 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 280
Bst4CI ACNGT 2 cut(s) 620, 960
Bst6I CTCTTC 1 cut(s) 93
BstACI GRCGYC 1 cut(s) 798
BstDEI CTNAG 2 cut(s) 216, 228
BstDSI CCRYGG 1 cut(s) 298
BstF5I GGATG 2 cut(s) 550, 805
BstKTI GATC 9 cut(s) 7, 64, 214, 371, 679, 787, 883, 940, 1009
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 9 cut(s) 4, 61, 211, 368, 676, 784, 880, 937, 1006
BstNI CCWGG 1 cut(s) 280
BstNSI RCATGY 2 cut(s) 862, 973
BstSCI CCNGG 3 cut(s) 94, 278, 590
BstSFI CTRYAG 1 cut(s) 375
BstV1I GCAGC 2 cut(s) 490, 706
BstV2I GAAGAC 1 cut(s) 954
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
Bsu15I ATCGAT 1 cut(s) 103
BsuI GTATCC 1 cut(s) 386
BsuRI GGCC 1 cut(s) 590
BsuTUI ATCGAT 1 cut(s) 103
BtgI CCRYGG 1 cut(s) 298
BtsCI GGATG 2 cut(s) 550, 805
BtsIMutI CAGTG 1 cut(s) 625
Cfr13I GGNCC 1 cut(s) 815
ClaI ATCGAT 1 cut(s) 103
CseI GACGC 2 cut(s) 241, 787
Csp6I GTAC 4 cut(s) 220, 265, 292, 944
CviAII CATG 8 cut(s) 248, 299, 461, 665, 859, 884, 941, 970
CviJI RGCY 6 cut(s) 127, 374, 590, 791, 917, 928
CviKI_1 RGCY 6 cut(s) 127, 374, 590, 791, 917, 928
CviQI GTAC 4 cut(s) 220, 265, 292, 944
DdeI CTNAG 2 cut(s) 216, 228
DpnI GATC 9 cut(s) 6, 63, 213, 370, 678, 786, 882, 939, 1008
DpnII GATC 9 cut(s) 4, 61, 211, 368, 676, 784, 880, 937, 1006
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
EciI GGCGGA 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 298
Eco47I GGWCC 1 cut(s) 815
Eco57I CTGAAG 1 cut(s) 795
EcoO109I RGGNCCY 1 cut(s) 815
EcoRI GAATTC 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 278
EcoT14I CCWWGG 1 cut(s) 298
EcoT22I ATGCAT 1 cut(s) 462
ErhI CCWWGG 1 cut(s) 298
Esp3I CGTCTC 1 cut(s) 224
FaeI CATG 8 cut(s) 251, 302, 464, 668, 862, 887, 944, 973
FaqI GGGAC 1 cut(s) 436
FatI CATG 8 cut(s) 247, 298, 460, 664, 858, 883, 940, 969
FauI CCCGC 1 cut(s) 724
FbaI TGATCA 1 cut(s) 937
Fnu4HI GCNGC 2 cut(s) 504, 720
FokI GGATG 2 cut(s) 557, 792
Fsp4HI GCNGC 2 cut(s) 504, 720
FspBI CTAG 1 cut(s) 986
GluI GCNGC 2 cut(s) 504, 720
HaeIII GGCC 1 cut(s) 590
HapII CCGG 2 cut(s) 96, 591
HgaI GACGC 2 cut(s) 241, 787
Hin1I GRCGYC 1 cut(s) 798
Hin1II CATG 8 cut(s) 251, 302, 464, 668, 862, 887, 944, 973
HincII GTYRAC 2 cut(s) 70, 527
HindII GTYRAC 2 cut(s) 70, 527
HindIII AAGCTT 1 cut(s) 789
HinfI GANTC 4 cut(s) 26, 130, 184, 333
HpaII CCGG 2 cut(s) 96, 591
HphI GGTGA 3 cut(s) 392, 707, 1001
Hpy166II GTNNAC 4 cut(s) 70, 305, 436, 527
Hpy188I TCNGA 2 cut(s) 484, 890
Hpy188III TCNNGA 6 cut(s) 188, 337, 407, 674, 813, 1004
Hpy8I GTNNAC 4 cut(s) 70, 305, 436, 527
Hpy99I CGWCG 2 cut(s) 748, 803
HpyAV CCTTC 3 cut(s) 334, 413, 819
HpyCH4III ACNGT 2 cut(s) 620, 960
HpyCH4IV ACGT 2 cut(s) 72, 529
HpyCH4V TGCA 9 cut(s) 122, 145, 460, 585, 623, 722, 767, 781, 862
HpyF3I CTNAG 2 cut(s) 216, 228
HpySE526I ACGT 2 cut(s) 72, 529
Hsp92I GRCGYC 1 cut(s) 798
Hsp92II CATG 8 cut(s) 251, 302, 464, 668, 862, 887, 944, 973
Ksp22I TGATCA 1 cut(s) 937
Kzo9I GATC 9 cut(s) 4, 61, 211, 368, 676, 784, 880, 937, 1006
LmnI GCTCC 1 cut(s) 283
Lsp1109I GCAGC 2 cut(s) 490, 706
LweI GCATC 2 cut(s) 109, 572
MaeI CTAG 1 cut(s) 986
MaeII ACGT 2 cut(s) 72, 529
MaeIII GTNAC 4 cut(s) 343, 575, 758, 989
MalI GATC 9 cut(s) 6, 63, 213, 370, 678, 786, 882, 939, 1008
MboI GATC 9 cut(s) 4, 61, 211, 368, 676, 784, 880, 937, 1006
MboII GAAGA 7 cut(s) 71, 80, 506, 764, 890, 934, 954
MflI RGATCY 1 cut(s) 61
MluCI AATT 9 cut(s) 82, 387, 609, 637, 703, 709, 752, 850, 909
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 522
MnlI CCTC 2 cut(s) 225, 786
Mph1103I ATGCAT 1 cut(s) 462
MroXI GAANNNNTTC 1 cut(s) 632
MseI TTAA 4 cut(s) 177, 726, 908, 1024
MspA1I CMGCKG 1 cut(s) 719
MspI CCGG 2 cut(s) 96, 591
MspR9I CCNGG 3 cut(s) 96, 280, 592
MvaI CCWGG 1 cut(s) 280
NciI CCSGG 2 cut(s) 96, 592
NcoI CCATGG 1 cut(s) 298
NdeII GATC 9 cut(s) 4, 61, 211, 368, 676, 784, 880, 937, 1006
NlaIII CATG 8 cut(s) 251, 302, 464, 668, 862, 887, 944, 973
NlaIV GGNNCC 1 cut(s) 817
NmuCI GTSAC 2 cut(s) 758, 989
NsiI ATGCAT 1 cut(s) 462
NspI RCATGY 2 cut(s) 862, 973
PasI CCCWGGG 1 cut(s) 279
PcsI WCGNNNNNNNCGW 1 cut(s) 313
PdmI GAANNNNTTC 1 cut(s) 632
PfeI GAWTC 3 cut(s) 130, 184, 333
PflMI CCANNNNNTGG 1 cut(s) 689
PkrI GCNGC 2 cut(s) 505, 721
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PpuMI RGGWCCY 1 cut(s) 815
Psp5II RGGWCCY 1 cut(s) 815
Psp6I CCWGG 1 cut(s) 278
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 817
PspPI GGNCC 1 cut(s) 815
PspPPI RGGWCCY 1 cut(s) 815
PsuI RGATCY 1 cut(s) 61
RsaI GTAC 4 cut(s) 221, 266, 293, 945
RsaNI GTAC 4 cut(s) 220, 265, 292, 944
SaqAI TTAA 4 cut(s) 177, 726, 908, 1024
SatI GCNGC 2 cut(s) 504, 720
Sau3AI GATC 9 cut(s) 4, 61, 211, 368, 676, 784, 880, 937, 1006
Sau96I GGNCC 1 cut(s) 815
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 3 cut(s) 96, 280, 592
SfaNI GCATC 2 cut(s) 109, 572
SfcI CTRYAG 1 cut(s) 375
SinI GGWCC 1 cut(s) 815
SmlI CTYRAG 1 cut(s) 865
SmoI CTYRAG 1 cut(s) 865
Sse9I AATT 9 cut(s) 82, 387, 609, 637, 703, 709, 752, 850, 909
SsiI CCGC 2 cut(s) 92, 717
SspMI CTAG 1 cut(s) 986
StyD4I CCNGG 3 cut(s) 94, 278, 590
StyI CCWWGG 1 cut(s) 298
TaaI ACNGT 2 cut(s) 620, 960
TaiI ACGT 2 cut(s) 75, 532
TaqI TCGA 3 cut(s) 103, 316, 743
TaqII GACCGA 1 cut(s) 185
TasI AATT 9 cut(s) 82, 387, 609, 637, 703, 709, 752, 850, 909
TfiI GAWTC 3 cut(s) 130, 184, 333
Tru1I TTAA 4 cut(s) 177, 726, 908, 1024
Tru9I TTAA 4 cut(s) 177, 726, 908, 1024
TscAI CASTG 1 cut(s) 625
TseFI GTSAC 2 cut(s) 758, 989
TseI GCWGC 2 cut(s) 503, 719
Tsp45I GTSAC 2 cut(s) 758, 989
TspDTI ATGAA 8 cut(s) 43, 372, 477, 507, 531, 551, 681, 989
TspRI CASTG 1 cut(s) 625
Van91I CCANNNNNTGG 1 cut(s) 689
VpaK11BI GGWCC 1 cut(s) 815
XapI RAATTY 2 cut(s) 82, 752
XceI RCATGY 2 cut(s) 862, 973
XmnI GAANNNNTTC 1 cut(s) 632
XspI CTAG 1 cut(s) 986
Zsp2I ATGCAT 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.