RLG00000023397
NAC Family

NAC domain-containing protein 67-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002868
Physical Location & Seq
Reverse (-)
23063132 .. 23065010
1879 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023397

Sequence Viewer

Length: 1005 bp
ATGGAGTCAAACTACCAAAAAAACCCTATGTTCATTGAAGATCCAGTTGACGTTTATTTGAATTCTCTACCGCCCGGTTATCGATTTGCCCCTACCGATGCAGAGCTGATTCTATATTACTTGCAGACAAAGATTTTGAAGCAGGAACTACCCTTTAACAAGATTCGTGAAATCGATATTTATCAATACGATCCTCAGTACCTTGCTGAGACGCCGTTGAACAGACATGGAGAAAGAGAATGGTACTTTTTCACTCCCAGAGAGCGAAAGTACCCCCATGGTTCACGGCCAAATCGAAAAGCACACGATGGATTCTGGAAGGTAACTGGAAAAGATGAAGTCATTAGATCAGCTACAGGTGAAATAATTGGATACAAAAATACTCTTGATTACTTTGAAGGGACACATTCAGAAAACCAAAAGACCAAATGGAAAATGCATGAATATAGACTAAAAAAATCAGAGAGAGATGAAGATATTGCTGCTTCAAATAATGAAAAATGTCAACGTGATATGAAGTTGGATGATTGTGTTTTGTGTAAGATTTACACAAGTAACAGATGCAAGGCCGGGAAAAGCACCAAGAAAATTAGCAACAGTGCAAAGAAATCATTCAATTCTGTCCAAGATAGAGATGTTCAGCCTGAAAATCAGGATCAACCAACTTTTGGTGGTGATTACAATTCCAGTTCTCCCGCTGCATTTAACAATGGTTATAGTTCGACGAACAAATTTTGTGACCCTGCAAATTTTCCTCTGCAAGATCCAGCTTGTGGCGTCGCCCATCCTTCAGGACCCATCAATAACTTCAATAATCAAAACAATACACATTACTACATGCACTCAAGTTCTTTGGAAGATCATGTCAGAGACTTTGAGCGTTGGCTAATGACAGCCACGAAGAAGGCAAAACCTGATCATGTACCTGATGGAATACAGTCTTCTAACATACCAGATGGTACTCTAGGTGACAAAGTTCATCAAGATCAATCCAAGAAGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

335

Amino Acids

38.56

Weight (kDa)

7.16

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 24 - 151 8.2e-40 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 668, 773
AciI CCGC 2 cut(s) 71, 696
AclWI GGATC 4 cut(s) 35, 185, 663, 758
AcoI YGGCCR 1 cut(s) 287
AcsI RAATTY 3 cut(s) 61, 731, 748
AcuI CTGAAG 1 cut(s) 774
AcyI GRCGYC 2 cut(s) 212, 777
AfaI GTAC 5 cut(s) 200, 245, 272, 924, 961
AfiI CCNNNNNNNGG 2 cut(s) 668, 773
AgsI TTSAA 8 cut(s) 38, 61, 139, 220, 398, 489, 616, 811
AluBI AGCT 3 cut(s) 106, 353, 770
AluI AGCT 3 cut(s) 106, 353, 770
Alw26I GTCTC 2 cut(s) 203, 864
AlwI GGATC 4 cut(s) 35, 185, 663, 758
AoxI GGCC 2 cut(s) 287, 567
ApeKI GCWGC 2 cut(s) 482, 698
ApoI RAATTY 3 cut(s) 61, 731, 748
ArsI GACNNNNNNTTYG 2 cut(s) 118, 150
Asp700I GAANNNNTTC 1 cut(s) 611
AspS9I GGNCC 1 cut(s) 794
AsuC2I CCSGG 2 cut(s) 75, 571
AsuHPI GGTGA 3 cut(s) 371, 686, 980
AvaII GGWCC 1 cut(s) 794
BbsI GAAGAC 1 cut(s) 933
BbvI GCAGC 2 cut(s) 469, 685
BccI CCATC 5 cut(s) 302, 792, 806, 923, 950
BceAI ACGGC 2 cut(s) 199, 302
BciVI GTATCC 1 cut(s) 365
BclI TGATCA 1 cut(s) 916
BcnI CCSGG 2 cut(s) 75, 571
BcoDI GTCTC 2 cut(s) 203, 864
BfaI CTAG 1 cut(s) 965
BfmI CTRYAG 1 cut(s) 354
BfuI GTATCC 1 cut(s) 365
BisI GCNGC 2 cut(s) 483, 699
BlsI GCNGC 2 cut(s) 484, 700
Bme1390I CCNGG 2 cut(s) 75, 571
Bme18I GGWCC 1 cut(s) 794
BmgT120I GGNCC 1 cut(s) 794
BmiI GGNNCC 1 cut(s) 796
BmrFI CCNGG 2 cut(s) 75, 571
BmsI GCATC 2 cut(s) 88, 551
BpiI GAAGAC 1 cut(s) 933
BpuEI CTTGAG 1 cut(s) 829
BpuMI CCSGG 2 cut(s) 75, 571
Bsa29I ATCGAT 2 cut(s) 82, 174
BsaBI GATNNNNATC 1 cut(s) 180
BsaHI GRCGYC 2 cut(s) 212, 777
BsaJI CCNNGG 1 cut(s) 277
Bsc4I CCNNNNNNNGG 2 cut(s) 668, 773
Bse1I ACTGG 3 cut(s) 44, 331, 687
Bse8I GATNNNNATC 1 cut(s) 180
BseCI ATCGAT 2 cut(s) 82, 174
BseDI CCNNGG 1 cut(s) 277
BseGI GGATG 2 cut(s) 529, 784
BseJI GATNNNNATC 1 cut(s) 180
BseLI CCNNNNNNNGG 2 cut(s) 668, 773
BseMII CTCAG 2 cut(s) 198, 209
BseNI ACTGG 3 cut(s) 44, 331, 687
BseXI GCAGC 2 cut(s) 469, 685
BshFI GGCC 2 cut(s) 289, 569
BshVI ATCGAT 2 cut(s) 82, 174
BsiSI CCGG 2 cut(s) 75, 570
BslFI GGGAC 1 cut(s) 415
BslI CCNNNNNNNGG 2 cut(s) 668, 773
BsmAI GTCTC 2 cut(s) 203, 864
BsmBI CGTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 415
BsnI GGCC 2 cut(s) 289, 569
Bsp143I GATC 8 cut(s) 40, 190, 347, 655, 763, 859, 916, 985
Bsp19I CCATGG 1 cut(s) 277
BspACI CCGC 2 cut(s) 71, 696
BspANI GGCC 2 cut(s) 289, 569
BspCNI CTCAG 2 cut(s) 199, 208
BspDI ATCGAT 2 cut(s) 82, 174
BspLI GGNNCC 1 cut(s) 796
BspPI GGATC 4 cut(s) 35, 185, 663, 758
BsrI ACTGG 3 cut(s) 44, 331, 687
BssECI CCNNGG 1 cut(s) 277
BssMI GATC 8 cut(s) 40, 190, 347, 655, 763, 859, 916, 985
BssNI GRCGYC 2 cut(s) 212, 777
BssT1I CCWWGG 1 cut(s) 277
Bst4CI ACNGT 2 cut(s) 599, 939
BstACI GRCGYC 2 cut(s) 212, 777
BstDEI CTNAG 2 cut(s) 195, 207
BstDSI CCRYGG 1 cut(s) 277
BstF5I GGATG 2 cut(s) 529, 784
BstKTI GATC 8 cut(s) 43, 193, 350, 658, 766, 862, 919, 988
BstMAI GTCTC 2 cut(s) 203, 864
BstMBI GATC 8 cut(s) 40, 190, 347, 655, 763, 859, 916, 985
BstNSI RCATGY 1 cut(s) 841
BstSCI CCNGG 2 cut(s) 73, 569
BstSFI CTRYAG 1 cut(s) 354
BstV1I GCAGC 2 cut(s) 469, 685
BstV2I GAAGAC 1 cut(s) 933
BstX2I RGATCY 2 cut(s) 40, 763
BstYI RGATCY 2 cut(s) 40, 763
Bsu15I ATCGAT 2 cut(s) 82, 174
BsuI GTATCC 1 cut(s) 365
BsuRI GGCC 2 cut(s) 289, 569
BsuTUI ATCGAT 2 cut(s) 82, 174
BtgI CCRYGG 1 cut(s) 277
BtsCI GGATG 2 cut(s) 529, 784
BtsIMutI CAGTG 1 cut(s) 604
Cfr13I GGNCC 1 cut(s) 794
ClaI ATCGAT 2 cut(s) 82, 174
CseI GACGC 2 cut(s) 220, 766
Csp6I GTAC 5 cut(s) 199, 244, 271, 923, 960
CviAII CATG 6 cut(s) 227, 278, 440, 838, 863, 920
CviJI RGCY 8 cut(s) 106, 289, 353, 569, 643, 770, 886, 896
CviKI_1 RGCY 8 cut(s) 106, 289, 353, 569, 643, 770, 886, 896
CviQI GTAC 5 cut(s) 199, 244, 271, 923, 960
DdeI CTNAG 2 cut(s) 195, 207
DpnI GATC 8 cut(s) 42, 192, 349, 657, 765, 861, 918, 987
DpnII GATC 8 cut(s) 40, 190, 347, 655, 763, 859, 916, 985
EaeI YGGCCR 1 cut(s) 287
Eco130I CCWWGG 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 794
Eco57I CTGAAG 1 cut(s) 774
EcoO109I RGGNCCY 1 cut(s) 794
EcoRI GAATTC 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 277
EcoT22I ATGCAT 1 cut(s) 441
ErhI CCWWGG 1 cut(s) 277
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 6 cut(s) 230, 281, 443, 841, 866, 923
FaqI GGGAC 1 cut(s) 415
FatI CATG 6 cut(s) 226, 277, 439, 837, 862, 919
FauI CCCGC 1 cut(s) 703
FbaI TGATCA 1 cut(s) 916
Fnu4HI GCNGC 2 cut(s) 483, 699
FokI GGATG 2 cut(s) 536, 771
Fsp4HI GCNGC 2 cut(s) 483, 699
FspBI CTAG 1 cut(s) 965
GluI GCNGC 2 cut(s) 483, 699
HaeIII GGCC 2 cut(s) 289, 569
HapII CCGG 2 cut(s) 75, 570
HgaI GACGC 2 cut(s) 220, 766
Hin1I GRCGYC 2 cut(s) 212, 777
Hin1II CATG 6 cut(s) 230, 281, 443, 841, 866, 923
HincII GTYRAC 2 cut(s) 49, 506
HindII GTYRAC 2 cut(s) 49, 506
HinfI GANTC 4 cut(s) 5, 109, 163, 312
HpaII CCGG 2 cut(s) 75, 570
HphI GGTGA 3 cut(s) 371, 686, 980
Hpy166II GTNNAC 3 cut(s) 49, 284, 506
Hpy188I TCNGA 3 cut(s) 412, 463, 869
Hpy188III TCNNGA 6 cut(s) 167, 316, 386, 653, 792, 983
Hpy8I GTNNAC 3 cut(s) 49, 284, 506
Hpy99I CGWCG 2 cut(s) 727, 782
HpyAV CCTTC 4 cut(s) 313, 392, 798, 898
HpyCH4III ACNGT 2 cut(s) 599, 939
HpyCH4IV ACGT 2 cut(s) 51, 508
HpyCH4V TGCA 9 cut(s) 101, 124, 439, 564, 602, 701, 746, 760, 841
HpyF3I CTNAG 2 cut(s) 195, 207
HpySE526I ACGT 2 cut(s) 51, 508
Hsp92I GRCGYC 2 cut(s) 212, 777
Hsp92II CATG 6 cut(s) 230, 281, 443, 841, 866, 923
Ksp22I TGATCA 1 cut(s) 916
Kzo9I GATC 8 cut(s) 40, 190, 347, 655, 763, 859, 916, 985
Lsp1109I GCAGC 2 cut(s) 469, 685
LweI GCATC 2 cut(s) 88, 551
MaeI CTAG 1 cut(s) 965
MaeII ACGT 2 cut(s) 51, 508
MaeIII GTNAC 4 cut(s) 322, 554, 737, 968
MalI GATC 8 cut(s) 42, 192, 349, 657, 765, 861, 918, 987
MboI GATC 8 cut(s) 40, 190, 347, 655, 763, 859, 916, 985
MboII GAAGA 5 cut(s) 50, 485, 869, 913, 933
MflI RGATCY 2 cut(s) 40, 763
MluCI AATT 7 cut(s) 61, 366, 588, 616, 682, 731, 748
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 501
MnlI CCTC 2 cut(s) 204, 765
Mph1103I ATGCAT 1 cut(s) 441
MroXI GAANNNNTTC 1 cut(s) 611
MseI TTAA 3 cut(s) 156, 705, 1003
MspA1I CMGCKG 1 cut(s) 698
MspI CCGG 2 cut(s) 75, 570
MspR9I CCNGG 2 cut(s) 75, 571
NciI CCSGG 2 cut(s) 75, 571
NcoI CCATGG 1 cut(s) 277
NdeII GATC 8 cut(s) 40, 190, 347, 655, 763, 859, 916, 985
NlaIII CATG 6 cut(s) 230, 281, 443, 841, 866, 923
NlaIV GGNNCC 1 cut(s) 796
NmuCI GTSAC 2 cut(s) 737, 968
NsiI ATGCAT 1 cut(s) 441
NspI RCATGY 1 cut(s) 841
PcsI WCGNNNNNNNCGW 1 cut(s) 292
PdmI GAANNNNTTC 1 cut(s) 611
PfeI GAWTC 3 cut(s) 109, 163, 312
PflMI CCANNNNNTGG 2 cut(s) 668, 773
PkrI GCNGC 2 cut(s) 484, 700
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 794
Psp5II RGGWCCY 1 cut(s) 794
PspN4I GGNNCC 1 cut(s) 796
PspPI GGNCC 1 cut(s) 794
PspPPI RGGWCCY 1 cut(s) 794
PsuI RGATCY 2 cut(s) 40, 763
RsaI GTAC 5 cut(s) 200, 245, 272, 924, 961
RsaNI GTAC 5 cut(s) 199, 244, 271, 923, 960
SaqAI TTAA 3 cut(s) 156, 705, 1003
SatI GCNGC 2 cut(s) 483, 699
Sau3AI GATC 8 cut(s) 40, 190, 347, 655, 763, 859, 916, 985
Sau96I GGNCC 1 cut(s) 794
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 2 cut(s) 75, 571
SfaNI GCATC 2 cut(s) 88, 551
SfcI CTRYAG 1 cut(s) 354
SinI GGWCC 1 cut(s) 794
SmlI CTYRAG 1 cut(s) 844
SmoI CTYRAG 1 cut(s) 844
Sse9I AATT 7 cut(s) 61, 366, 588, 616, 682, 731, 748
SsiI CCGC 2 cut(s) 71, 696
SspMI CTAG 1 cut(s) 965
StyD4I CCNGG 2 cut(s) 73, 569
StyI CCWWGG 1 cut(s) 277
TaaI ACNGT 2 cut(s) 599, 939
TaiI ACGT 2 cut(s) 54, 511
TaqI TCGA 4 cut(s) 82, 174, 295, 722
TasI AATT 7 cut(s) 61, 366, 588, 616, 682, 731, 748
TfiI GAWTC 3 cut(s) 109, 163, 312
Tru1I TTAA 3 cut(s) 156, 705, 1003
Tru9I TTAA 3 cut(s) 156, 705, 1003
TscAI CASTG 1 cut(s) 604
TseFI GTSAC 2 cut(s) 737, 968
TseI GCWGC 2 cut(s) 482, 698
Tsp45I GTSAC 2 cut(s) 737, 968
TspDTI ATGAA 7 cut(s) 22, 351, 456, 486, 510, 530, 968
TspRI CASTG 1 cut(s) 604
Van91I CCANNNNNTGG 2 cut(s) 668, 773
VpaK11BI GGWCC 1 cut(s) 794
XapI RAATTY 3 cut(s) 61, 731, 748
XceI RCATGY 1 cut(s) 841
XmnI GAANNNNTTC 1 cut(s) 611
XspI CTAG 1 cut(s) 965
Zsp2I ATGCAT 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.