Rw3G021710
NAC Family

NAC domain-containing protein 67-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0002868
Physical Location & Seq
Forward (+)
26344447 .. 26347869
3423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G021710.1

Sequence Viewer

Length: 921 bp
ATGGAGTCAAACTACCAAAAAAACCCTATGTTCATTGAAGATCCAGTTGACGTTTATTTGAATTCTCTTCCGCCCGGTTATCGATTTGCCCCTACCGATGCAGAGCTGATTCTATATTACTTGCAGAAAAAGATTTTGAAGCAGGAACTACCCCTTAACAAGATTCGTGAAATCGATATTTATCAACACGATCCTCAGTACCTTGCTGAGACGCAGTTGAACAGACATGGAGAAAGAGAATGGTACTTTTTCACTCCCAGGGAGCGAAAGTACCCCCATGGTTCACGGCCAAATCGAACAGCACACGATGGATTCTGGAAGGTAACTGGAAAAGATGAAGTCATTACATCAGCTACAGGTGAAATAATTGGATACAAAAATACTCTTGATTACTTTGAAGGGACACATTCAGAAAACCAAAAGACCAAATGGAAAATGCATGAATATAGACTAAAGAAATCAGAGAGAGATGAAGATATTGCTGCTTCAAATAATGAAAAATGTCAACGTGATATGAAGTTGGATGATTGTGTTTTGTGTAAGATTTACACAAGTAACAGATGCAAGGCCGGGAAAAGCACCAAGAAAATTAGCAACAGTGCAAAGAAATCATTCAATTCTGTCCAAGATAGAGATGATCAGCATGAAAATCAGGATCAACCAACTTTTGGTGGTGATTACAATTCCAATTCTCCCGCTGCATTTAACAATGGTTATGGTTCGACGAACAAATTTTGTGACCCTGCAAATCTTCCTCTGCAAGATCAAGCTTATGGCATCGCCCATCCTTCAGGACACATCAATAACTTCAATAATCAAAACAATACACATTACAACATGCACTCAAGTTCTTTGGAAGATCATGTCAGAGATTTTGAGCGTTGGTTAATTACAGCCGTGCACGAAGAAGGCAAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

306

Amino Acids

35.63

Weight (kDa)

6.5

Isoelectric Point (pI)

34.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 24 - 151 1e-40 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 668
AciI CCGC 2 cut(s) 71, 696
AclWI GGATC 3 cut(s) 35, 185, 663
AcoI YGGCCR 1 cut(s) 287
AcsI RAATTY 2 cut(s) 61, 731
AcuI CTGAAG 1 cut(s) 774
AfaI GTAC 3 cut(s) 200, 245, 272
AfiI CCNNNNNNNGG 1 cut(s) 668
AgsI TTSAA 8 cut(s) 38, 61, 139, 220, 398, 489, 616, 811
AjnI CCWGG 1 cut(s) 257
AluBI AGCT 3 cut(s) 106, 353, 770
AluI AGCT 3 cut(s) 106, 353, 770
Alw21I GWGCWC 1 cut(s) 903
Alw26I GTCTC 1 cut(s) 203
Alw44I GTGCAC 1 cut(s) 899
AlwI GGATC 3 cut(s) 35, 185, 663
AoxI GGCC 2 cut(s) 287, 567
ApaLI GTGCAC 1 cut(s) 899
ApeKI GCWGC 2 cut(s) 482, 698
ApoI RAATTY 2 cut(s) 61, 731
Asp700I GAANNNNTTC 1 cut(s) 611
AsuC2I CCSGG 2 cut(s) 75, 571
AsuHPI GGTGA 2 cut(s) 371, 686
BaeGI GKGCMC 1 cut(s) 903
Bbv12I GWGCWC 1 cut(s) 903
BbvI GCAGC 2 cut(s) 469, 685
BccI CCATC 2 cut(s) 302, 792
BceAI ACGGC 2 cut(s) 302, 881
BciT130I CCWGG 1 cut(s) 259
BciVI GTATCC 1 cut(s) 365
BclI TGATCA 1 cut(s) 637
BcnI CCSGG 2 cut(s) 75, 571
BcoDI GTCTC 1 cut(s) 203
BfmI CTRYAG 1 cut(s) 354
BfuI GTATCC 1 cut(s) 365
BisI GCNGC 2 cut(s) 483, 699
BlsI GCNGC 2 cut(s) 484, 700
Bme1390I CCNGG 3 cut(s) 75, 259, 571
BmrFI CCNGG 3 cut(s) 75, 259, 571
BmsI GCATC 3 cut(s) 88, 551, 786
BpuEI CTTGAG 1 cut(s) 829
BpuMI CCSGG 2 cut(s) 75, 571
Bsa29I ATCGAT 2 cut(s) 82, 174
BsaBI GATNNNNATC 1 cut(s) 180
BsaJI CCNNGG 3 cut(s) 257, 258, 277
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 1 cut(s) 668
Bse1I ACTGG 2 cut(s) 44, 331
Bse8I GATNNNNATC 1 cut(s) 180
BseBI CCWGG 1 cut(s) 259
BseCI ATCGAT 2 cut(s) 82, 174
BseDI CCNNGG 3 cut(s) 257, 258, 277
BseGI GGATG 2 cut(s) 529, 784
BseJI GATNNNNATC 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 668
BseMII CTCAG 2 cut(s) 198, 209
BseNI ACTGG 2 cut(s) 44, 331
BseSI GKGCMC 1 cut(s) 903
BseXI GCAGC 2 cut(s) 469, 685
BshFI GGCC 2 cut(s) 289, 569
BshVI ATCGAT 2 cut(s) 82, 174
BsiHKAI GWGCWC 1 cut(s) 903
BsiSI CCGG 2 cut(s) 75, 570
BslFI GGGAC 1 cut(s) 415
BslI CCNNNNNNNGG 1 cut(s) 668
BsmAI GTCTC 1 cut(s) 203
BsmBI CGTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 415
BsnI GGCC 2 cut(s) 289, 569
Bsp1286I GDGCHC 1 cut(s) 903
Bsp143I GATC 6 cut(s) 40, 190, 637, 655, 763, 859
Bsp19I CCATGG 1 cut(s) 277
BspACI CCGC 2 cut(s) 71, 696
BspANI GGCC 2 cut(s) 289, 569
BspCNI CTCAG 2 cut(s) 199, 208
BspDI ATCGAT 2 cut(s) 82, 174
BspPI GGATC 3 cut(s) 35, 185, 663
BsrI ACTGG 2 cut(s) 44, 331
BssECI CCNNGG 3 cut(s) 257, 258, 277
BssMI GATC 6 cut(s) 40, 190, 637, 655, 763, 859
BssT1I CCWWGG 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 259
Bst4CI ACNGT 1 cut(s) 599
Bst6I CTCTTC 1 cut(s) 72
BstDEI CTNAG 2 cut(s) 195, 207
BstDSI CCRYGG 1 cut(s) 277
BstF5I GGATG 2 cut(s) 529, 784
BstKTI GATC 6 cut(s) 43, 193, 640, 658, 766, 862
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 6 cut(s) 40, 190, 637, 655, 763, 859
BstNI CCWGG 1 cut(s) 259
BstNSI RCATGY 1 cut(s) 841
BstSCI CCNGG 3 cut(s) 73, 257, 569
BstSFI CTRYAG 1 cut(s) 354
BstSLI GKGCMC 1 cut(s) 903
BstV1I GCAGC 2 cut(s) 469, 685
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
Bsu15I ATCGAT 2 cut(s) 82, 174
BsuI GTATCC 1 cut(s) 365
BsuRI GGCC 2 cut(s) 289, 569
BsuTUI ATCGAT 2 cut(s) 82, 174
BtgI CCRYGG 1 cut(s) 277
BtgZI GCGATG 1 cut(s) 763
BtsCI GGATG 2 cut(s) 529, 784
BtsIMutI CAGTG 1 cut(s) 604
ClaI ATCGAT 2 cut(s) 82, 174
CseI GACGC 1 cut(s) 220
Csp6I GTAC 3 cut(s) 199, 244, 271
CviAII CATG 6 cut(s) 227, 278, 440, 644, 838, 863
CviJI RGCY 6 cut(s) 106, 289, 353, 569, 770, 896
CviKI_1 RGCY 6 cut(s) 106, 289, 353, 569, 770, 896
CviQI GTAC 3 cut(s) 199, 244, 271
DdeI CTNAG 2 cut(s) 195, 207
DpnI GATC 6 cut(s) 42, 192, 639, 657, 765, 861
DpnII GATC 6 cut(s) 40, 190, 637, 655, 763, 859
EaeI YGGCCR 1 cut(s) 287
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
EciI GGCGGA 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 277
Eco57I CTGAAG 1 cut(s) 774
EcoRI GAATTC 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 257
EcoT14I CCWWGG 1 cut(s) 277
EcoT22I ATGCAT 1 cut(s) 441
ErhI CCWWGG 1 cut(s) 277
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 6 cut(s) 230, 281, 443, 647, 841, 866
FaqI GGGAC 1 cut(s) 415
FatI CATG 6 cut(s) 226, 277, 439, 643, 837, 862
FauI CCCGC 1 cut(s) 703
FbaI TGATCA 1 cut(s) 637
Fnu4HI GCNGC 2 cut(s) 483, 699
FokI GGATG 2 cut(s) 536, 771
Fsp4HI GCNGC 2 cut(s) 483, 699
GluI GCNGC 2 cut(s) 483, 699
HaeIII GGCC 2 cut(s) 289, 569
HapII CCGG 2 cut(s) 75, 570
HgaI GACGC 1 cut(s) 220
Hin1II CATG 6 cut(s) 230, 281, 443, 647, 841, 866
HincII GTYRAC 2 cut(s) 49, 506
HindII GTYRAC 2 cut(s) 49, 506
HindIII AAGCTT 1 cut(s) 768
HinfI GANTC 4 cut(s) 5, 109, 163, 312
HpaII CCGG 2 cut(s) 75, 570
HphI GGTGA 2 cut(s) 371, 686
Hpy166II GTNNAC 4 cut(s) 49, 284, 506, 901
Hpy188I TCNGA 3 cut(s) 412, 463, 869
Hpy188III TCNNGA 5 cut(s) 167, 316, 386, 653, 792
Hpy8I GTNNAC 4 cut(s) 49, 284, 506, 901
Hpy99I CGWCG 1 cut(s) 727
HpyAV CCTTC 4 cut(s) 313, 392, 798, 902
HpyCH4III ACNGT 1 cut(s) 599
HpyCH4IV ACGT 2 cut(s) 51, 508
HpyF3I CTNAG 2 cut(s) 195, 207
HpySE526I ACGT 2 cut(s) 51, 508
Hsp92II CATG 6 cut(s) 230, 281, 443, 647, 841, 866
Ksp22I TGATCA 1 cut(s) 637
Kzo9I GATC 6 cut(s) 40, 190, 637, 655, 763, 859
LmnI GCTCC 1 cut(s) 262
Lsp1109I GCAGC 2 cut(s) 469, 685
LweI GCATC 3 cut(s) 88, 551, 786
MaeII ACGT 2 cut(s) 51, 508
MaeIII GTNAC 3 cut(s) 322, 554, 737
MalI GATC 6 cut(s) 42, 192, 639, 657, 765, 861
MboI GATC 6 cut(s) 40, 190, 637, 655, 763, 859
MboII GAAGA 6 cut(s) 50, 59, 485, 743, 869, 917
MflI RGATCY 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 903
MluCI AATT 8 cut(s) 61, 366, 588, 616, 682, 688, 731, 888
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 501
MnlI CCTC 2 cut(s) 204, 765
Mph1103I ATGCAT 1 cut(s) 441
MroXI GAANNNNTTC 1 cut(s) 611
MseI TTAA 3 cut(s) 156, 705, 887
MspA1I CMGCKG 1 cut(s) 698
MspI CCGG 2 cut(s) 75, 570
MspR9I CCNGG 3 cut(s) 75, 259, 571
MvaI CCWGG 1 cut(s) 259
NciI CCSGG 2 cut(s) 75, 571
NcoI CCATGG 1 cut(s) 277
NdeII GATC 6 cut(s) 40, 190, 637, 655, 763, 859
NlaIII CATG 6 cut(s) 230, 281, 443, 647, 841, 866
NmuCI GTSAC 1 cut(s) 737
NsiI ATGCAT 1 cut(s) 441
NspI RCATGY 1 cut(s) 841
PasI CCCWGGG 1 cut(s) 258
PcsI WCGNNNNNNNCGW 1 cut(s) 292
PdmI GAANNNNTTC 1 cut(s) 611
PfeI GAWTC 3 cut(s) 109, 163, 312
PflMI CCANNNNNTGG 1 cut(s) 668
PkrI GCNGC 2 cut(s) 484, 700
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 257
PspGI CCWGG 1 cut(s) 257
PsuI RGATCY 1 cut(s) 40
RsaI GTAC 3 cut(s) 200, 245, 272
RsaNI GTAC 3 cut(s) 199, 244, 271
SaqAI TTAA 3 cut(s) 156, 705, 887
SatI GCNGC 2 cut(s) 483, 699
Sau3AI GATC 6 cut(s) 40, 190, 637, 655, 763, 859
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 3 cut(s) 75, 259, 571
SduI GDGCHC 1 cut(s) 903
SetI ASST 8 cut(s) 54, 108, 204, 324, 355, 361, 511, 772
SfaNI GCATC 3 cut(s) 88, 551, 786
SfcI CTRYAG 1 cut(s) 354
SmlI CTYRAG 1 cut(s) 844
SmoI CTYRAG 1 cut(s) 844
Sse9I AATT 8 cut(s) 61, 366, 588, 616, 682, 688, 731, 888
SsiI CCGC 2 cut(s) 71, 696
StyD4I CCNGG 3 cut(s) 73, 257, 569
StyI CCWWGG 1 cut(s) 277
TaaI ACNGT 1 cut(s) 599
TaiI ACGT 2 cut(s) 54, 511
TaqI TCGA 4 cut(s) 82, 174, 295, 722
TasI AATT 8 cut(s) 61, 366, 588, 616, 682, 688, 731, 888
TfiI GAWTC 3 cut(s) 109, 163, 312
Tru1I TTAA 3 cut(s) 156, 705, 887
Tru9I TTAA 3 cut(s) 156, 705, 887
TscAI CASTG 1 cut(s) 604
TseFI GTSAC 1 cut(s) 737
TseI GCWGC 2 cut(s) 482, 698
Tsp45I GTSAC 1 cut(s) 737
TspDTI ATGAA 7 cut(s) 22, 351, 456, 486, 510, 530, 660
TspRI CASTG 1 cut(s) 604
Van91I CCANNNNNTGG 1 cut(s) 668
VneI GTGCAC 1 cut(s) 899
XapI RAATTY 2 cut(s) 61, 731
XceI RCATGY 1 cut(s) 841
XmnI GAANNNNTTC 1 cut(s) 611
Zsp2I ATGCAT 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.