Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002868

Physical Location & Seq

Genomic Coordinates Reverse (-)

10332541 .. 10335805

Gene Structure 3265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G064900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGAGGAAAGCAATATTCAGGTTTCTCATGAAATTTTTGATGAAGCATGGTTAACCGATAAATATATTAATGATCTTCCAAGTGGTTATCGATTCGTCCCAACCAACGAAGAATTGGTTGAAGAGTACTTAAAGAAGAAGATCAAGAATGAGCTACTGCCCATCAACAGGTTTCGTGAAGTTGATGTTTACAAATACCATCCTGAAGAGCTTACTGGGATGCACAACTTACTCAGAGAAAACGAGTGGTACTTTTTCAGTTCAAGGGAACGAAAGTACCCAAATGGATCTCGGCCAAATCGAGCAGCAGACAACCATGGATATTGGAAGGCAACTGGAACCGATGACAAGATCAAAGTTAACAATGAGGTAATTGGGCAGAAGAGGATTCTAGATTTTTATGCAGGGAAACACGGGGAAGGAGTTAAGACAGAATGGAAAATGCATGAATACGTTCTCAGTGGAAATATTGCTCCTTCAAATGGCCATAAAGCCAACGGTGACATGAAGTTGAACGATTGTGTTTTGTGTAAGATTTATAAGAACAAAAGAGTCAAGAAAAATAAAAATAAAGGGATTGCAGATTCAGTTCAATCAGCTCATCAGCATGATCATCAAGAATATCCATCTCCTCTTATTGCCAATTCCAATTCATCCTCTTCATCAATAAATCATCATTACACTGCTGCTGGTATGTCTTCCACAACAGTGAACACAGAATTTGGTGAGCCCCCGTATTATAATGAGTCTTTCCAAAATGGAGCTTGGAGCAATTATCCATGGCCCATCACCAGCTTCAACAATCATCGAACTTTAGACTCTGCATATACAAGTCATGGGCTGCCTATGAACACCTTTTCTTCTCCATTTAGCACAGATTTGGAGCCGGCAAATGACACGGCATTGGCTGATCCAAGTACTTCTTCTCAGATCCCTCACGATCATGCTGAGGAAGATGACAATAATTCATTTGATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

327

Amino Acids

37.29

Weight (kDa)

5.72

Isoelectric Point (pI)

46.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23460 FvH4_6g23470
malus_domestica	MD14G1069400.v1.1
prunus_persica	Prupe.7G064900_v2.0.a1 Prupe.7G065000_v2.0.a1
pyrus_communis	pycom12g06060
rosa_chinensis	RchiOBHm_Chr3g0481471 RchiOBHm_Chr3g0481481
rosa_laevigata	RLG00000023394 RLG00000023396 RLG00000023397
rosa_multiflora	Rmu_sc0000064.1_g000029 Rmu_sc0000064.1_g000030 Rmu_sc0000064.1_g000031 Rmu_sc0011674.1_g000001 Rmu_sc0020270.1_g000003 Rmu_sc0021673.1_g000001
rosa_roxburghii	Rroxscaffold_6G00400410 Rroxscaffold_6G00400420 Rroxscaffold_6G00400430
rosa_rugosa	Rorug03G0191900 Rorug03G0192000 Rorug03G0192100
rosa_samantha	Rh3AG243100 Rh3AG243200 Rh3AG243300 Rh3BG278000 Rh3BG278100 Rh3BG278300 Rh3CG273000 Rh3CG273100 Rh3CG273300 Rh3DG270000 Rh3DG270100 Rh3DG270200 Rh3DG270300
rosa_wichuraiana	Rw3G021710 Rw3G021720 Rw3G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	540, 741
AclWI	GGATC	3 cut(s)	295, 905, 925
AcoI	YGGCCR	2 cut(s)	293, 484
AcsI	RAATTY	2 cut(s)	33, 719
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	4 cut(s)	128, 251, 278, 919
AfiI	CCNNNNNNNGG	2 cut(s)	168, 482
AgsI	TTSAA	6 cut(s)	122, 264, 480, 514, 593, 799
AjuI	GAANNNNNNNTTGG	2 cut(s)	907, 939
AleI	CACNNNNGTG	1 cut(s)	707
AluBI	AGCT	5 cut(s)	154, 211, 599, 764, 795
AluI	AGCT	5 cut(s)	154, 211, 599, 764, 795
AlwI	GGATC	3 cut(s)	295, 905, 925
AoxI	GGCC	3 cut(s)	293, 484, 782
ApeKI	GCWGC	3 cut(s)	305, 686, 841
ApoI	RAATTY	2 cut(s)	33, 719
AseI	ATTAAT	1 cut(s)	69
Asp700I	GAANNNNTTC	1 cut(s)	453
AspS9I	GGNCC	1 cut(s)	783
AsuHPI	GGTGA	3 cut(s)	512, 737, 781
BaeI	ACNNNNGTAYC	2 cut(s)	260, 293
BalI	TGGCCA	1 cut(s)	486
BanII	GRGCYC	1 cut(s)	732
BbsI	GAAGAC	1 cut(s)	690
BbvCI	CCTCAGC	1 cut(s)	948
BbvI	GCAGC	3 cut(s)	317, 673, 828
BccI	CCATC	4 cut(s)	170, 207, 634, 794
BceAI	ACGGC	1 cut(s)	915
BclI	TGATCA	1 cut(s)	610
BfaI	CTAG	1 cut(s)	392
BisI	GCNGC	3 cut(s)	306, 687, 842
BlsI	GCNGC	3 cut(s)	307, 688, 843
BmcAI	AGTACT	2 cut(s)	128, 919
BmgT120I	GGNCC	1 cut(s)	783
BmiI	GGNNCC	2 cut(s)	340, 885
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	1 cut(s)	210
BmuI	ACTGGG	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	690
Bpu10I	CCTNAGC	1 cut(s)	948
Bsa29I	ATCGAT	1 cut(s)	91
BsaJI	CCNNGG	2 cut(s)	316, 779
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 482
Bse118I	RCCGGY	1 cut(s)	886
Bse1I	ACTGG	2 cut(s)	220, 340
BseCI	ATCGAT	1 cut(s)	91
BseDI	CCNNGG	2 cut(s)	316, 779
BseGI	GGATG	3 cut(s)	199, 225, 653
BseLI	CCNNNNNNNGG	2 cut(s)	168, 482
BseMII	CTCAG	4 cut(s)	247, 472, 939, 941
BseNI	ACTGG	2 cut(s)	220, 340
BseRI	GAGGAG	1 cut(s)	621
BseXI	GCAGC	3 cut(s)	317, 673, 828
BshFI	GGCC	3 cut(s)	295, 486, 784
BshVI	ATCGAT	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	887
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	2 cut(s)	168, 482
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	3 cut(s)	295, 486, 784
Bsp1286I	GDGCHC	1 cut(s)	732
Bsp143I	GATC	8 cut(s)	73, 141, 287, 351, 610, 910, 930, 940
Bsp19I	CCATGG	2 cut(s)	316, 779
BspANI	GGCC	3 cut(s)	295, 486, 784
BspCNI	CTCAG	4 cut(s)	246, 471, 940, 940
BspDI	ATCGAT	1 cut(s)	91
BspHI	TCATGA	1 cut(s)	28
BspLI	GGNNCC	2 cut(s)	340, 885
BspPI	GGATC	3 cut(s)	295, 905, 925
BspQI	GCTCTTC	1 cut(s)	201
BsrFI	RCCGGY	1 cut(s)	886
BsrI	ACTGG	2 cut(s)	220, 340
BssAI	RCCGGY	1 cut(s)	886
BssECI	CCNNGG	2 cut(s)	316, 779
BssMI	GATC	8 cut(s)	73, 141, 287, 351, 610, 910, 930, 940
BssT1I	CCWWGG	2 cut(s)	316, 779
Bst4CI	ACNGT	2 cut(s)	500, 709
Bst6I	CTCTTC	4 cut(s)	117, 201, 377, 664
BstC8I	GCNNGC	1 cut(s)	888
BstDEI	CTNAG	4 cut(s)	233, 458, 927, 948
BstDSI	CCRYGG	2 cut(s)	316, 779
BstF5I	GGATG	3 cut(s)	199, 225, 653
BstKTI	GATC	8 cut(s)	76, 144, 290, 354, 613, 913, 933, 943
BstMBI	GATC	8 cut(s)	73, 141, 287, 351, 610, 910, 930, 940
BstV1I	GCAGC	3 cut(s)	317, 673, 828
BstV2I	GAAGAC	1 cut(s)	690
BstX2I	RGATCY	2 cut(s)	287, 930
BstYI	RGATCY	2 cut(s)	287, 930
Bsu15I	ATCGAT	1 cut(s)	91
BsuRI	GGCC	3 cut(s)	295, 486, 784
BsuTUI	ATCGAT	1 cut(s)	91
BtgI	CCRYGG	2 cut(s)	316, 779
BtsCI	GGATG	3 cut(s)	199, 225, 653
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	3 cut(s)	466, 681, 714
Cac8I	GCNNGC	1 cut(s)	888
CciI	TCATGA	1 cut(s)	28
Cfr10I	RCCGGY	1 cut(s)	886
Cfr13I	GGNCC	1 cut(s)	783
ClaI	ATCGAT	1 cut(s)	91
Csp6I	GTAC	4 cut(s)	127, 250, 277, 918
CviAII	CATG	9 cut(s)	29, 48, 317, 446, 505, 608, 780, 836, 944
CviQI	GTAC	4 cut(s)	127, 250, 277, 918
DdeI	CTNAG	4 cut(s)	233, 458, 927, 948
DpnI	GATC	8 cut(s)	75, 143, 289, 353, 612, 912, 932, 942
DpnII	GATC	8 cut(s)	73, 141, 287, 351, 610, 910, 930, 940
EaeI	YGGCCR	2 cut(s)	293, 484
Eam1104I	CTCTTC	4 cut(s)	117, 201, 377, 664
EarI	CTCTTC	4 cut(s)	117, 201, 377, 664
Eco130I	CCWWGG	2 cut(s)	316, 779
Eco24I	GRGCYC	1 cut(s)	732
Eco57I	CTGAAG	1 cut(s)	225
EcoT14I	CCWWGG	2 cut(s)	316, 779
EcoT22I	ATGCAT	1 cut(s)	447
EcoT38I	GRGCYC	1 cut(s)	732
ErhI	CCWWGG	2 cut(s)	316, 779
FaeI	CATG	9 cut(s)	32, 51, 320, 449, 508, 611, 783, 839, 947
FalI	AAGNNNNNCTT	2 cut(s)	907, 939
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	9 cut(s)	28, 47, 316, 445, 504, 607, 779, 835, 943
FbaI	TGATCA	1 cut(s)	610
Fnu4HI	GCNGC	3 cut(s)	306, 687, 842
FokI	GGATG	3 cut(s)	186, 232, 640
FriOI	GRGCYC	1 cut(s)	732
Fsp4HI	GCNGC	3 cut(s)	306, 687, 842
FspBI	CTAG	1 cut(s)	392
GluI	GCNGC	3 cut(s)	306, 687, 842
HaeIII	GGCC	3 cut(s)	295, 486, 784
HapII	CCGG	1 cut(s)	887
Hin1II	CATG	9 cut(s)	32, 51, 320, 449, 508, 611, 783, 839, 947
HincII	GTYRAC	2 cut(s)	54, 361
HindII	GTYRAC	2 cut(s)	54, 361
HinfI	GANTC	6 cut(s)	93, 388, 552, 584, 746, 818
HpaI	GTTAAC	2 cut(s)	54, 361
HpaII	CCGG	1 cut(s)	887
HphI	GGTGA	3 cut(s)	512, 737, 781
Hpy166II	GTNNAC	4 cut(s)	54, 190, 361, 712
Hpy188I	TCNGA	2 cut(s)	236, 930
Hpy188III	TCNNGA	8 cut(s)	29, 145, 176, 203, 392, 556, 617, 938
Hpy8I	GTNNAC	4 cut(s)	54, 190, 361, 712
HpyAV	CCTTC	3 cut(s)	322, 413, 486
HpyCH4III	ACNGT	2 cut(s)	500, 709
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	5 cut(s)	223, 404, 445, 581, 824
HpyF3I	CTNAG	4 cut(s)	233, 458, 927, 948
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	9 cut(s)	32, 51, 320, 449, 508, 611, 783, 839, 947
KroI	GCCGGC	1 cut(s)	886
KroNI	GCCGGC	1 cut(s)	888
Ksp22I	TGATCA	1 cut(s)	610
KspAI	GTTAAC	2 cut(s)	54, 361
Kzo9I	GATC	8 cut(s)	73, 141, 287, 351, 610, 910, 930, 940
LguI	GCTCTTC	1 cut(s)	201
LmnI	GCTCC	4 cut(s)	478, 761, 768, 883
LpnPI	CCDG	9 cut(s)	5, 154, 201, 216, 321, 390, 675, 805, 900
Lsp1109I	GCAGC	3 cut(s)	317, 673, 828
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	1 cut(s)	500
MalI	GATC	8 cut(s)	75, 143, 289, 353, 612, 912, 932, 942
MboI	GATC	8 cut(s)	73, 141, 287, 351, 610, 910, 930, 940
MflI	RGATCY	2 cut(s)	287, 930
MhlI	GDGCHC	1 cut(s)	732
MlsI	TGGCCA	1 cut(s)	486
MluCI	AATT	8 cut(s)	33, 113, 372, 643, 649, 719, 772, 964
MluNI	TGGCCA	1 cut(s)	486
MlyI	GAGTC	3 cut(s)	561, 755, 812
MnlI	CCTC	6 cut(s)	361, 378, 642, 667, 943, 945
Mox20I	TGGCCA	1 cut(s)	486
Mph1103I	ATGCAT	1 cut(s)	447
MroNI	GCCGGC	1 cut(s)	886
MroXI	GAANNNNTTC	1 cut(s)	453
MscI	TGGCCA	1 cut(s)	486
MseI	TTAA	5 cut(s)	53, 69, 131, 360, 426
MslI	CAYNNNNRTG	3 cut(s)	606, 707, 942
Msp20I	TGGCCA	1 cut(s)	486
MspI	CCGG	1 cut(s)	887
NaeI	GCCGGC	1 cut(s)	888
NcoI	CCATGG	2 cut(s)	316, 779
NdeII	GATC	8 cut(s)	73, 141, 287, 351, 610, 910, 930, 940
NgoMIV	GCCGGC	1 cut(s)	886
NlaIII	CATG	9 cut(s)	32, 51, 320, 449, 508, 611, 783, 839, 947
NlaIV	GGNNCC	2 cut(s)	340, 885
NmeAIII	GCCGAG	1 cut(s)	271
NmuCI	GTSAC	1 cut(s)	500
NsiI	ATGCAT	1 cut(s)	447
OliI	CACNNNNGTG	1 cut(s)	707
PagI	TCATGA	1 cut(s)	28
PciSI	GCTCTTC	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	298
PdiI	GCCGGC	1 cut(s)	888
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	3 cut(s)	93, 388, 584
PkrI	GCNGC	3 cut(s)	307, 688, 843
PleI	GAGTC	3 cut(s)	560, 754, 812
PpsI	GAGTC	3 cut(s)	560, 754, 812
PshBI	ATTAAT	1 cut(s)	69
PsiI	TTATAA	2 cut(s)	540, 741
PspN4I	GGNNCC	2 cut(s)	340, 885
PspPI	GGNCC	1 cut(s)	783
PsuI	RGATCY	2 cut(s)	287, 930
RsaI	GTAC	4 cut(s)	128, 251, 278, 919
RsaNI	GTAC	4 cut(s)	127, 250, 277, 918
RseI	CAYNNNNRTG	3 cut(s)	606, 707, 942
SapI	GCTCTTC	1 cut(s)	201
SaqAI	TTAA	5 cut(s)	53, 69, 131, 360, 426
SatI	GCNGC	3 cut(s)	306, 687, 842
Sau3AI	GATC	8 cut(s)	73, 141, 287, 351, 610, 910, 930, 940
Sau96I	GGNCC	1 cut(s)	783
ScaI	AGTACT	2 cut(s)	128, 919
SchI	GAGTC	3 cut(s)	561, 755, 812
SduI	GDGCHC	1 cut(s)	732
SfaNI	GCATC	1 cut(s)	210
SmiMI	CAYNNNNRTG	3 cut(s)	606, 707, 942
Sse9I	AATT	8 cut(s)	33, 113, 372, 643, 649, 719, 772, 964
SspI	AATATT	2 cut(s)	16, 469
SspMI	CTAG	1 cut(s)	392
StyI	CCWWGG	2 cut(s)	316, 779
TaaI	ACNGT	2 cut(s)	500, 709
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	3 cut(s)	91, 301, 808
TasI	AATT	8 cut(s)	33, 113, 372, 643, 649, 719, 772, 964
TatI	WGTACW	2 cut(s)	126, 917
TfiI	GAWTC	3 cut(s)	93, 388, 584
Tru1I	TTAA	5 cut(s)	53, 69, 131, 360, 426
Tru9I	TTAA	5 cut(s)	53, 69, 131, 360, 426
TscAI	CASTG	3 cut(s)	466, 688, 714
TseFI	GTSAC	1 cut(s)	500
TseI	GCWGC	3 cut(s)	305, 686, 841
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	8 cut(s)	45, 57, 462, 521, 642, 651, 863, 957
TspRI	CASTG	3 cut(s)	466, 688, 714
VspI	ATTAAT	1 cut(s)	69
XapI	RAATTY	2 cut(s)	33, 719
XbaI	TCTAGA	1 cut(s)	391
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XmnI	GAANNNNTTC	1 cut(s)	453
XspI	CTAG	1 cut(s)	392
ZrmI	AGTACT	2 cut(s)	128, 919
Zsp2I	ATGCAT	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.