Rh3DG270200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002868
Physical Location & Seq
Forward (+)
27023249 .. 27023704
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG270200.1

Sequence Viewer

Length: 456 bp
ATGCAGATGAGTCGAGATCCATTATCGTCACGATTCTTTTCTTCTCCGTTTCCCTTGCAATCTTCAACAGATCAGATTTGCACAGAATTGGAGCCTGTAGATGATAAGATATCAGAGGTCGATCCAAGTTCTATGTTACCTGCGCATGTCAGAGAATGTGATGAGAATATGTCAGAGAATAAGAATCAAAACTATACAGATGATTACGACACGTACTTGATGCAGATGAGTCGAGATCCATCGTCGTCACGATTATTTTCTTCTCCGTTTCCCTTGCAATCTTCAACAGACCAGATTTGCGCAGGATTGGAGCCTGTAGATGATAAGATATCAGAGGTCGATCCAAGTTCTATTGTGTTACCTGCGCATGTCAGAGAATATGATAATCGTGCATGTAAAGCCGAGCCTATTCAGCCTGCAGTTAGGGATGAAGGTGATGATCATGTGTCTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.99

Weight (kDa)

4.3

Isoelectric Point (pI)

82.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 3 cut(s) 144, 301, 366
Acc36I ACCTGC 2 cut(s) 148, 370
AclWI GGATC 4 cut(s) 11, 116, 230, 335
AfaI GTAC 1 cut(s) 215
AflIII ACRYGT 1 cut(s) 210
AgsI TTSAA 2 cut(s) 66, 285
AlwI GGATC 4 cut(s) 11, 116, 230, 335
AspLEI GCGC 3 cut(s) 145, 302, 367
AsuHPI GGTGA 1 cut(s) 446
BccI CCATC 1 cut(s) 247
BcgI CGANNNNNNTGC 3 cut(s) 27, 212, 246
BclI TGATCA 1 cut(s) 439
BfmI CTRYAG 3 cut(s) 96, 315, 417
BfuAI ACCTGC 2 cut(s) 148, 370
BmiI GGNNCC 2 cut(s) 93, 312
BmsI GCATC 1 cut(s) 210
BsaAI YACGTR 1 cut(s) 213
BseGI GGATG 1 cut(s) 433
Bsp143I GATC 6 cut(s) 16, 70, 121, 235, 340, 439
BspLI GGNNCC 2 cut(s) 93, 312
BspMAI CTGCAG 1 cut(s) 421
BspMI ACCTGC 2 cut(s) 148, 370
BspPI GGATC 4 cut(s) 11, 116, 230, 335
BssMI GATC 6 cut(s) 16, 70, 121, 235, 340, 439
BstBAI YACGTR 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 417
BstF5I GGATG 1 cut(s) 433
BstHHI GCGC 3 cut(s) 145, 302, 367
BstKTI GATC 6 cut(s) 19, 73, 124, 238, 343, 442
BstMBI GATC 6 cut(s) 16, 70, 121, 235, 340, 439
BstMWI GCNNNNNNNGC 2 cut(s) 398, 412
BstNSI RCATGY 3 cut(s) 149, 371, 396
BstSFI CTRYAG 3 cut(s) 96, 315, 417
BstX2I RGATCY 2 cut(s) 16, 235
BstYI RGATCY 2 cut(s) 16, 235
BtsCI GGATG 1 cut(s) 433
BveI ACCTGC 2 cut(s) 148, 370
Cac8I GCNNGC 1 cut(s) 417
CfoI GCGC 3 cut(s) 145, 302, 367
Csp6I GTAC 1 cut(s) 214
CviAII CATG 4 cut(s) 146, 368, 393, 443
CviJI RGCY 5 cut(s) 94, 313, 401, 406, 415
CviKI_1 RGCY 5 cut(s) 94, 313, 401, 406, 415
CviQI GTAC 1 cut(s) 214
DpnI GATC 6 cut(s) 18, 72, 123, 237, 342, 441
DpnII GATC 6 cut(s) 16, 70, 121, 235, 340, 439
Eco32I GATATC 2 cut(s) 111, 330
EcoRV GATATC 2 cut(s) 111, 330
FaeI CATG 4 cut(s) 149, 371, 396, 446
FaiI YATR 8 cut(s) 134, 147, 170, 195, 369, 381, 394, 444
FatI CATG 4 cut(s) 145, 367, 392, 442
FbaI TGATCA 1 cut(s) 439
FokI GGATG 1 cut(s) 440
FspI TGCGCA 3 cut(s) 144, 301, 366
GlaI GCGC 3 cut(s) 144, 301, 366
HhaI GCGC 3 cut(s) 145, 302, 367
Hin1II CATG 4 cut(s) 149, 371, 396, 446
Hin6I GCGC 3 cut(s) 143, 300, 365
HinP1I GCGC 3 cut(s) 143, 300, 365
HinfI GANTC 4 cut(s) 10, 33, 184, 229
HphI GGTGA 1 cut(s) 446
Hpy188I TCNGA 6 cut(s) 75, 115, 152, 175, 334, 374
Hpy188III TCNNGA 4 cut(s) 14, 30, 233, 249
Hpy99I CGWCG 1 cut(s) 247
HpyAV CCTTC 1 cut(s) 425
HpyCH4IV ACGT 1 cut(s) 212
HpyCH4V TGCA 7 cut(s) 4, 58, 81, 223, 277, 392, 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 412
HpySE526I ACGT 1 cut(s) 212
Hsp92II CATG 4 cut(s) 149, 371, 396, 446
HspAI GCGC 3 cut(s) 143, 300, 365
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 6 cut(s) 16, 70, 121, 235, 340, 439
LmnI GCTCC 2 cut(s) 91, 310
LpnPI CCDG 7 cut(s) 108, 153, 288, 305, 327, 375, 429
LweI GCATC 1 cut(s) 210
MaeII ACGT 1 cut(s) 212
MaeIII GTNAC 4 cut(s) 27, 135, 246, 357
MalI GATC 6 cut(s) 18, 72, 123, 237, 342, 441
MboI GATC 6 cut(s) 16, 70, 121, 235, 340, 439
MboII GAAGA 4 cut(s) 33, 54, 252, 273
MflI RGATCY 2 cut(s) 16, 235
MluCI AATT 1 cut(s) 86
MlyI GAGTC 2 cut(s) 19, 238
MnlI CCTC 2 cut(s) 109, 328
MwoI GCNNNNNNNGC 2 cut(s) 398, 412
NdeII GATC 6 cut(s) 16, 70, 121, 235, 340, 439
NlaIII CATG 4 cut(s) 149, 371, 396, 446
NlaIV GGNNCC 2 cut(s) 93, 312
NmeAIII GCCGAG 1 cut(s) 427
NmuCI GTSAC 2 cut(s) 27, 246
NsbI TGCGCA 3 cut(s) 144, 301, 366
NspI RCATGY 3 cut(s) 149, 371, 396
PfeI GAWTC 2 cut(s) 33, 184
PleI GAGTC 2 cut(s) 18, 237
PpsI GAGTC 2 cut(s) 18, 237
Ppu21I YACGTR 1 cut(s) 213
PspN4I GGNNCC 2 cut(s) 93, 312
PstI CTGCAG 1 cut(s) 421
PsuI RGATCY 2 cut(s) 16, 235
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
Sau3AI GATC 6 cut(s) 16, 70, 121, 235, 340, 439
SchI GAGTC 2 cut(s) 19, 238
SetI ASST 6 cut(s) 120, 142, 215, 339, 364, 436
SfaNI GCATC 1 cut(s) 210
SfcI CTRYAG 3 cut(s) 96, 315, 417
Sse9I AATT 1 cut(s) 86
TaiI ACGT 1 cut(s) 215
TaqI TCGA 4 cut(s) 13, 120, 232, 339
TasI AATT 1 cut(s) 86
TfiI GAWTC 2 cut(s) 33, 184
TseFI GTSAC 2 cut(s) 27, 246
Tsp45I GTSAC 2 cut(s) 27, 246
TspDTI ATGAA 1 cut(s) 444
TspGWI ACGGA 2 cut(s) 36, 255
XceI RCATGY 3 cut(s) 149, 371, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.