RchiOBHm_Chr3g0481481
NAC Family

NAC domain-containing protein 67-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002868
Physical Location & Seq
Forward (+)
27535334 .. 27536064
731 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44643

Sequence Viewer

Length: 519 bp
ATGGTTCCAGTAGTCTTGAATGAGACTGATGATTACTTTAATTCGATGCCACCCGGTTTTCGATTTGTTCCGACCGATGAAGTCTTGATTCTATGTTACTTGAGGAAGAAGTTATTGAACGAACCATTGCCCATTAACAGGATTCGTCATGTTAATATTTACCAATACCATCCTCGAGACCTTACCGCTATGTACGACCTCCTTAGAGAAAGTGAATGGTACTATTTCACTCCTATTACTCGAAAGTATGTGAACAGTTCTCGACCAAATCGAGTTGCACCGAATGGTTTTTGGAAGCCAAGAATGAACAACCCCATCAAAGATAGGAATAATGAAGTAGTTGGGTACAGGACGAGTCTGGAATTTTATGAAGGGAAATATCCAAACGGAAATAAGACAGGGTGGAAAATGAATGAATATACAATCAATGAAGCAATTATTCCTCCAAATATTAATACAAATGGCAAAACTCGCATCAAGGTACCACAAATATATATAGATGCAATTTTCTTTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

172

Amino Acids

20.5

Weight (kDa)

9.47

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 17 - 141 1.8e-34 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 481
AccB1I GGYRCC 1 cut(s) 481
AciI CCGC 1 cut(s) 186
AcsI RAATTY 1 cut(s) 362
AfaI GTAC 4 cut(s) 194, 221, 347, 483
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 2 cut(s) 19, 118
Alw26I GTCTC 2 cut(s) 17, 171
Ama87I CYCGRG 1 cut(s) 174
ApoI RAATTY 1 cut(s) 362
AseI ATTAAT 1 cut(s) 453
Asp718I GGTACC 1 cut(s) 481
AsuC2I CCSGG 1 cut(s) 54
AvaI CYCGRG 1 cut(s) 174
BanI GGYRCC 1 cut(s) 481
BccI CCATC 2 cut(s) 177, 323
BcnI CCSGG 1 cut(s) 54
BcoDI GTCTC 2 cut(s) 17, 171
Bme1390I CCNGG 1 cut(s) 54
BmeT110I CYCGRG 1 cut(s) 174
BmiI GGNNCC 2 cut(s) 6, 483
BmrFI CCNGG 1 cut(s) 54
BmsI GCATC 3 cut(s) 36, 483, 490
BpuEI CTTGAG 1 cut(s) 121
BpuMI CCSGG 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 171
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse1I ACTGG 1 cut(s) 8
Bse3DI GCAATG 1 cut(s) 125
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMI GCAATG 1 cut(s) 125
BseNI ACTGG 1 cut(s) 8
Bsh1285I CGRYCG 1 cut(s) 75
BshNI GGYRCC 1 cut(s) 481
BsiEI CGRYCG 1 cut(s) 75
BsiHKCI CYCGRG 1 cut(s) 174
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 2 cut(s) 17, 171
Bso31I GGTCTC 1 cut(s) 171
BsoBI CYCGRG 1 cut(s) 174
BspACI CCGC 1 cut(s) 186
BspLI GGNNCC 2 cut(s) 6, 483
BspT107I GGYRCC 1 cut(s) 481
BspTNI GGTCTC 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 125
BsrI ACTGG 1 cut(s) 8
Bst4CI ACNGT 1 cut(s) 257
BstDEI CTNAG 1 cut(s) 203
BstF5I GGATG 1 cut(s) 169
BstMAI GTCTC 2 cut(s) 17, 171
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 1 cut(s) 471
BstSCI CCNGG 1 cut(s) 52
BtsCI GGATG 1 cut(s) 169
Csp6I GTAC 4 cut(s) 193, 220, 346, 482
CviAII CATG 1 cut(s) 149
CviJI RGCY 1 cut(s) 298
CviKI_1 RGCY 1 cut(s) 298
CviQI GTAC 4 cut(s) 193, 220, 346, 482
DdeI CTNAG 1 cut(s) 203
Eco31I GGTCTC 1 cut(s) 171
Eco88I CYCGRG 1 cut(s) 174
FaeI CATG 1 cut(s) 152
FaiI YATR 9 cut(s) 94, 150, 191, 249, 369, 420, 493, 495, 497
FatI CATG 1 cut(s) 148
FokI GGATG 1 cut(s) 156
HapII CCGG 1 cut(s) 54
Hin1II CATG 1 cut(s) 152
HinfI GANTC 3 cut(s) 88, 142, 355
HpaII CCGG 1 cut(s) 54
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 5 cut(s) 16, 85, 176, 261, 359
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 365
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4V TGCA 2 cut(s) 278, 503
HpyF10VI GCNNNNNNNGC 1 cut(s) 471
HpyF3I CTNAG 1 cut(s) 203
Hsp92II CATG 1 cut(s) 152
KpnI GGTACC 1 cut(s) 485
LpnPI CCDG 6 cut(s) 21, 67, 124, 334, 344, 384
LweI GCATC 3 cut(s) 36, 483, 490
MaeIII GTNAC 1 cut(s) 95
MboII GAAGA 1 cut(s) 118
MluCI AATT 4 cut(s) 40, 362, 435, 504
MlyI GAGTC 1 cut(s) 364
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 4 cut(s) 96, 183, 209, 453
MseI TTAA 4 cut(s) 39, 135, 153, 453
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 471
NciI CCSGG 1 cut(s) 54
NlaIII CATG 1 cut(s) 152
NlaIV GGNNCC 2 cut(s) 6, 483
PaeR7I CTCGAG 1 cut(s) 174
PcsI WCGNNNNNNNCGW 1 cut(s) 268
PfeI GAWTC 2 cut(s) 88, 142
PleI GAGTC 1 cut(s) 363
PpsI GAGTC 1 cut(s) 363
PshBI ATTAAT 1 cut(s) 453
PspN4I GGNNCC 2 cut(s) 6, 483
RsaI GTAC 4 cut(s) 194, 221, 347, 483
RsaNI GTAC 4 cut(s) 193, 220, 346, 482
SaqAI TTAA 4 cut(s) 39, 135, 153, 453
SchI GAGTC 1 cut(s) 364
ScrFI CCNGG 1 cut(s) 54
SetI ASST 3 cut(s) 183, 201, 483
SfaNI GCATC 3 cut(s) 36, 483, 490
Sfr274I CTCGAG 1 cut(s) 174
SlaI CTCGAG 1 cut(s) 174
SmlI CTYRAG 2 cut(s) 100, 174
SmoI CTYRAG 2 cut(s) 100, 174
Sse9I AATT 4 cut(s) 40, 362, 435, 504
SsiI CCGC 1 cut(s) 186
SspI AATATT 2 cut(s) 157, 451
StyD4I CCNGG 1 cut(s) 52
TaaI ACNGT 1 cut(s) 257
TaqI TCGA 7 cut(s) 44, 61, 175, 241, 262, 271, 514
TaqII GACCGA 1 cut(s) 89
TasI AATT 4 cut(s) 40, 362, 435, 504
TfiI GAWTC 2 cut(s) 88, 142
Tru1I TTAA 4 cut(s) 39, 135, 153, 453
Tru9I TTAA 4 cut(s) 39, 135, 153, 453
TspDTI ATGAA 7 cut(s) 93, 320, 348, 384, 425, 429, 444
TspGWI ACGGA 1 cut(s) 402
VspI ATTAAT 1 cut(s) 453
XapI RAATTY 1 cut(s) 362
XhoI CTCGAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.