Rh3BG278300
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0002868
Physical Location & Seq
Forward (+)
27306517 .. 27308109
1593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG278300.1

Sequence Viewer

Length: 663 bp
ATGGTTCCAGTAGTCTTGAATGAGACTGATGATTACTTTAATTCGATGCCACCCGCTATGTACGACCTCCTTAGAGAAAGTGAATGGTACTATTTCACTCCTATTACCCGAAAGTATGTGAACAGTTCTCGACCAAATCGAGTTGCACCGAATGGTTTTTGGAAGCCAAGAATGAGCAACCCCATCAAAGATAGGAATAATGAAGTAGTTGGGTACAGGACGAGTCTGGAATTTTATGAAGGGAAATATCCAAACGGAAATAAGACAGGGTGGAAAATGAATGAATATACAATCAATGAAGCAATTATTCCTCCAAATATTAATACAAATGGCGAAACTCGTATCAAGTTGGATGATTGTGTTTTGTGCAACATCTTTACGCTTAAGGTGGCCAGGAAGCTTCAGAATGAGATACAATATCAGTTGGAGAATCCTATAGGTCGTAACAAAGTAACATCAACATCAATTGTTGGTCCAAGTAACACTACTACAACAACTAGTGATCAGTTACCTGTGCATGACGCCATGGAACATGAGCCGCATAGTAACCATGAAGTGCAACAAGATGGTTCTTCTGATTCTAAGCACGAAGAAGAAGATGACGGTTGGTTGATCATTGGAGTAGAGTCTCTGAATATCTCTTCAGATCCTATGATAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

220

Amino Acids

25.15

Weight (kDa)

4.98

Isoelectric Point (pI)

41.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 15 - 97 3.7e-17 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 54, 539
AclWI GGATC 1 cut(s) 641
AcoI YGGCCR 1 cut(s) 390
AcsI RAATTY 1 cut(s) 230
AcuI CTGAAG 2 cut(s) 386, 627
AcyI GRCGYC 1 cut(s) 522
AfaI GTAC 3 cut(s) 62, 89, 215
AfiI CCNNNNNNNGG 1 cut(s) 656
AflII CTTAAG 1 cut(s) 383
AgsI TTSAA 1 cut(s) 19
AhlI ACTAGT 1 cut(s) 497
AjnI CCWGG 1 cut(s) 392
AluBI AGCT 1 cut(s) 400
AluI AGCT 1 cut(s) 400
Alw26I GTCTC 2 cut(s) 17, 633
AlwI GGATC 1 cut(s) 641
AoxI GGCC 1 cut(s) 390
ApoI RAATTY 1 cut(s) 230
AseI ATTAAT 1 cut(s) 321
AspS9I GGNCC 1 cut(s) 473
AvaII GGWCC 1 cut(s) 473
BalI TGGCCA 1 cut(s) 392
BccI CCATC 2 cut(s) 191, 560
BciT130I CCWGG 1 cut(s) 394
BclI TGATCA 2 cut(s) 502, 612
BcoDI GTCTC 2 cut(s) 17, 633
BcuI ACTAGT 1 cut(s) 497
BfaI CTAG 1 cut(s) 498
BfmI CTRYAG 1 cut(s) 435
BfrI CTTAAG 1 cut(s) 383
BisI GCNGC 1 cut(s) 539
BlsI GCNGC 1 cut(s) 540
Bme1390I CCNGG 1 cut(s) 394
Bme18I GGWCC 1 cut(s) 473
BmgT120I GGNCC 1 cut(s) 473
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 394
BmsI GCATC 1 cut(s) 36
BsaHI GRCGYC 1 cut(s) 522
BsaJI CCNNGG 1 cut(s) 525
Bsc4I CCNNNNNNNGG 1 cut(s) 656
Bse1I ACTGG 1 cut(s) 8
BseBI CCWGG 1 cut(s) 394
BseDI CCNNGG 1 cut(s) 525
BseGI GGATG 1 cut(s) 358
BseLI CCNNNNNNNGG 1 cut(s) 656
BseNI ACTGG 1 cut(s) 8
BshFI GGCC 1 cut(s) 392
BslI CCNNNNNNNGG 1 cut(s) 656
BsmAI GTCTC 2 cut(s) 17, 633
BsnI GGCC 1 cut(s) 392
Bsp143I GATC 3 cut(s) 502, 612, 646
Bsp19I CCATGG 1 cut(s) 525
BspACI CCGC 2 cut(s) 54, 539
BspANI GGCC 1 cut(s) 392
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 641
BspTI CTTAAG 1 cut(s) 383
BsrI ACTGG 1 cut(s) 8
BssECI CCNNGG 1 cut(s) 525
BssMI GATC 3 cut(s) 502, 612, 646
BssNI GRCGYC 1 cut(s) 522
BssT1I CCWWGG 1 cut(s) 525
Bst2UI CCWGG 1 cut(s) 394
Bst4CI ACNGT 2 cut(s) 125, 605
Bst6I CTCTTC 1 cut(s) 646
BstACI GRCGYC 1 cut(s) 522
BstAFI CTTAAG 1 cut(s) 383
BstDEI CTNAG 2 cut(s) 71, 582
BstDSI CCRYGG 1 cut(s) 525
BstENI CCTNNNNNAGG 1 cut(s) 654
BstF5I GGATG 1 cut(s) 358
BstKTI GATC 3 cut(s) 505, 615, 649
BstMAI GTCTC 2 cut(s) 17, 633
BstMBI GATC 3 cut(s) 502, 612, 646
BstNI CCWGG 1 cut(s) 394
BstSCI CCNGG 1 cut(s) 392
BstSFI CTRYAG 1 cut(s) 435
BstX2I RGATCY 1 cut(s) 646
BstYI RGATCY 1 cut(s) 646
BsuRI GGCC 1 cut(s) 392
BtgI CCRYGG 1 cut(s) 525
BtsCI GGATG 1 cut(s) 358
Cfr13I GGNCC 1 cut(s) 473
CseI GACGC 1 cut(s) 530
Csp6I GTAC 3 cut(s) 61, 88, 214
CviAII CATG 4 cut(s) 518, 526, 533, 551
CviJI RGCY 4 cut(s) 166, 392, 400, 538
CviKI_1 RGCY 4 cut(s) 166, 392, 400, 538
CviQI GTAC 3 cut(s) 61, 88, 214
DdeI CTNAG 2 cut(s) 71, 582
DpnI GATC 3 cut(s) 504, 614, 648
DpnII GATC 3 cut(s) 502, 612, 646
EaeI YGGCCR 1 cut(s) 390
Eam1104I CTCTTC 1 cut(s) 646
EarI CTCTTC 1 cut(s) 646
Eco130I CCWWGG 1 cut(s) 525
Eco47I GGWCC 1 cut(s) 473
Eco57I CTGAAG 2 cut(s) 386, 627
EcoNI CCTNNNNNAGG 1 cut(s) 654
EcoRII CCWGG 1 cut(s) 392
EcoT14I CCWWGG 1 cut(s) 525
ErhI CCWWGG 1 cut(s) 525
FaeI CATG 4 cut(s) 521, 529, 536, 554
FatI CATG 4 cut(s) 517, 525, 532, 550
FauI CCCGC 1 cut(s) 61
FbaI TGATCA 2 cut(s) 502, 612
Fnu4HI GCNGC 1 cut(s) 539
FokI GGATG 1 cut(s) 365
Fsp4HI GCNGC 1 cut(s) 539
FspBI CTAG 1 cut(s) 498
GluI GCNGC 1 cut(s) 539
HaeIII GGCC 1 cut(s) 392
HgaI GACGC 1 cut(s) 530
Hin1I GRCGYC 1 cut(s) 522
Hin1II CATG 4 cut(s) 521, 529, 536, 554
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 4 cut(s) 223, 430, 578, 626
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 4 cut(s) 405, 577, 633, 646
Hpy188III TCNNGA 3 cut(s) 16, 129, 227
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 233
HpyCH4III ACNGT 2 cut(s) 125, 605
HpyCH4V TGCA 4 cut(s) 146, 369, 517, 559
HpyF3I CTNAG 2 cut(s) 71, 582
Hsp92I GRCGYC 1 cut(s) 522
Hsp92II CATG 4 cut(s) 521, 529, 536, 554
Ksp22I TGATCA 2 cut(s) 502, 612
Kzo9I GATC 3 cut(s) 502, 612, 646
LpnPI CCDG 7 cut(s) 21, 202, 212, 252, 379, 406, 525
LweI GCATC 1 cut(s) 36
MaeI CTAG 1 cut(s) 498
MaeIII GTNAC 5 cut(s) 443, 451, 479, 507, 545
MalI GATC 3 cut(s) 504, 614, 648
MboI GATC 3 cut(s) 502, 612, 646
MboII GAAGA 5 cut(s) 564, 602, 605, 608, 633
MfeI CAATTG 1 cut(s) 465
MflI RGATCY 1 cut(s) 646
MlsI TGGCCA 1 cut(s) 392
MluCI AATT 4 cut(s) 40, 230, 303, 465
MluNI TGGCCA 1 cut(s) 392
MlyI GAGTC 2 cut(s) 232, 635
MmeI TCCRAC 2 cut(s) 330, 405
MnlI CCTC 2 cut(s) 77, 321
Mox20I TGGCCA 1 cut(s) 392
MscI TGGCCA 1 cut(s) 392
MseI TTAA 3 cut(s) 39, 321, 384
Msp20I TGGCCA 1 cut(s) 392
MspCI CTTAAG 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 394
MunI CAATTG 1 cut(s) 465
MvaI CCWGG 1 cut(s) 394
NcoI CCATGG 1 cut(s) 525
NdeII GATC 3 cut(s) 502, 612, 646
NlaIII CATG 4 cut(s) 521, 529, 536, 554
NlaIV GGNNCC 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 136
PfeI GAWTC 2 cut(s) 430, 578
PkrI GCNGC 1 cut(s) 540
PleI GAGTC 2 cut(s) 231, 634
PpsI GAGTC 2 cut(s) 231, 634
PshBI ATTAAT 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 392
PspGI CCWGG 1 cut(s) 392
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 473
PsuI RGATCY 1 cut(s) 646
RsaI GTAC 3 cut(s) 62, 89, 215
RsaNI GTAC 3 cut(s) 61, 88, 214
SaqAI TTAA 3 cut(s) 39, 321, 384
SatI GCNGC 1 cut(s) 539
Sau3AI GATC 3 cut(s) 502, 612, 646
Sau96I GGNCC 1 cut(s) 473
SchI GAGTC 2 cut(s) 232, 635
ScrFI CCNGG 1 cut(s) 394
SetI ASST 5 cut(s) 69, 390, 402, 442, 514
SfaNI GCATC 1 cut(s) 36
SfcI CTRYAG 1 cut(s) 435
SinI GGWCC 1 cut(s) 473
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
SpeI ACTAGT 1 cut(s) 497
Sse9I AATT 4 cut(s) 40, 230, 303, 465
SsiI CCGC 2 cut(s) 54, 539
SspI AATATT 1 cut(s) 319
SspMI CTAG 1 cut(s) 498
StyD4I CCNGG 1 cut(s) 392
StyI CCWWGG 1 cut(s) 525
TaaI ACNGT 2 cut(s) 125, 605
TaqI TCGA 3 cut(s) 44, 130, 139
TasI AATT 4 cut(s) 40, 230, 303, 465
TauI GCSGC 1 cut(s) 541
TfiI GAWTC 2 cut(s) 430, 578
Tru1I TTAA 3 cut(s) 39, 321, 384
Tru9I TTAA 3 cut(s) 39, 321, 384
TspDTI ATGAA 6 cut(s) 216, 252, 293, 297, 312, 567
TspGWI ACGGA 1 cut(s) 270
Vha464I CTTAAG 1 cut(s) 383
VpaK11BI GGWCC 1 cut(s) 473
VspI ATTAAT 1 cut(s) 321
XagI CCTNNNNNAGG 1 cut(s) 654
XapI RAATTY 1 cut(s) 230
XspI CTAG 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.