Rw3G021720
NAC Family

NAC domain-containing protein 67-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0002868
Physical Location & Seq
Forward (+)
26349576 .. 26351093
1518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G021720.1

Sequence Viewer

Length: 630 bp
ATGTCTGATGGAGAGATTGATGATTATTTTAGATCTTTTCCACCAGGTTATCAATTTGTCCCCACTGATGCAGAGTTGATTATATATTATTTGAAGAGAAAGATCTTGAATCAACAACTACCCGTGAACCGGATTCGTGATGAGAATATTTATCACTACCATCCTCAAACTCTTGCTGACCGTAGGTACCCCAATGGATCTCGGCCTAATCGATCAGCAAAAGGTGGATACTGGAAGGCAACGAAAAGAGATGAGATCATCACAGCTCAAGGTGGTGAAGAAATTGGATTCAAAATGCATCTGGAATTTTATGAAGGAACACATGCACAAGGTAGAAAGACAAACTGGAAAATGCATGAATATAGGATCAAAGAAGAGAATGAAGAGAATGATATTGGTCCTCCTCAAAATACCAACAAGGGTGAAGGTATCAGCATGAGGTTGGATGATTGGGTTTTGTGTAAGATTTACATAAAGAAGAATTTCAAGGTTGATACAGACAGCAACAGTTCAAAGACATCAGACAATTCTGATCAAGTAGTACTCCCAGTAACAAATCTATTCAGCATGAAGTTCAAGATCAATCTCTCAATGCCTCACAATTCGACCACAATGGCTTCTCAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

209

Amino Acids

24.33

Weight (kDa)

7.8

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 14 - 123 2.1e-26 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 186
AccB1I GGYRCC 1 cut(s) 186
AclWI GGATC 2 cut(s) 205, 374
AcsI RAATTY 2 cut(s) 305, 481
AfaI GTAC 2 cut(s) 188, 543
AfiI CCNNNNNNNGG 1 cut(s) 129
AgsI TTSAA 6 cut(s) 94, 109, 292, 487, 513, 577
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
AlwI GGATC 2 cut(s) 205, 374
AoxI GGCC 1 cut(s) 203
ApoI RAATTY 2 cut(s) 305, 481
Asp700I GAANNNNTTC 1 cut(s) 482
Asp718I GGTACC 1 cut(s) 186
AspS9I GGNCC 1 cut(s) 398
AsuHPI GGTGA 2 cut(s) 287, 434
AvaII GGWCC 1 cut(s) 398
BanI GGYRCC 1 cut(s) 186
BccI CCATC 2 cut(s) 2, 168
BciT130I CCWGG 1 cut(s) 45
BciVI GTATCC 1 cut(s) 221
BclI TGATCA 1 cut(s) 532
BfuI GTATCC 1 cut(s) 221
BglII AGATCT 2 cut(s) 32, 102
BmcAI AGTACT 1 cut(s) 543
Bme1390I CCNGG 1 cut(s) 45
Bme18I GGWCC 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 1 cut(s) 188
BmrFI CCNGG 1 cut(s) 45
BmrI ACTGGG 1 cut(s) 542
BmsI GCATC 2 cut(s) 58, 307
BmuI ACTGGG 1 cut(s) 542
BpuEI CTTGAG 1 cut(s) 252
Bsa29I ATCGAT 1 cut(s) 211
BsaWI WCCGGW 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse1I ACTGG 3 cut(s) 236, 350, 548
BseBI CCWGG 1 cut(s) 45
BseCI ATCGAT 1 cut(s) 211
BseGI GGATG 2 cut(s) 160, 451
BseLI CCNNNNNNNGG 1 cut(s) 129
BseNI ACTGG 3 cut(s) 236, 350, 548
BseRI GAGGAG 1 cut(s) 393
BshFI GGCC 1 cut(s) 205
BshNI GGYRCC 1 cut(s) 186
BshVI ATCGAT 1 cut(s) 211
BsiSI CCGG 1 cut(s) 130
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 44
BsnI GGCC 1 cut(s) 205
Bsp143I GATC 8 cut(s) 32, 102, 197, 212, 255, 366, 532, 579
BspANI GGCC 1 cut(s) 205
BspDI ATCGAT 1 cut(s) 211
BspLI GGNNCC 1 cut(s) 188
BspPI GGATC 2 cut(s) 205, 374
BspT107I GGYRCC 1 cut(s) 186
BsrI ACTGG 3 cut(s) 236, 350, 548
BssMI GATC 8 cut(s) 32, 102, 197, 212, 255, 366, 532, 579
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 2 cut(s) 182, 509
Bst6I CTCTTC 3 cut(s) 89, 369, 378
BstF5I GGATG 2 cut(s) 160, 451
BstKTI GATC 8 cut(s) 35, 105, 200, 215, 258, 369, 535, 582
BstMBI GATC 8 cut(s) 32, 102, 197, 212, 255, 366, 532, 579
BstNI CCWGG 1 cut(s) 45
BstNSI RCATGY 1 cut(s) 326
BstSCI CCNGG 1 cut(s) 43
BstX2I RGATCY 3 cut(s) 32, 102, 197
BstYI RGATCY 3 cut(s) 32, 102, 197
Bsu15I ATCGAT 1 cut(s) 211
BsuI GTATCC 1 cut(s) 221
BsuRI GGCC 1 cut(s) 205
BsuTUI ATCGAT 1 cut(s) 211
BtsCI GGATG 2 cut(s) 160, 451
BtsIMutI CAGTG 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 398
ClaI ATCGAT 1 cut(s) 211
CsiI ACCWGGT 1 cut(s) 43
Csp6I GTAC 2 cut(s) 187, 542
CviAII CATG 4 cut(s) 323, 356, 436, 568
CviJI RGCY 3 cut(s) 205, 266, 617
CviKI_1 RGCY 3 cut(s) 205, 266, 617
CviQI GTAC 2 cut(s) 187, 542
DpnI GATC 8 cut(s) 34, 104, 199, 214, 257, 368, 534, 581
DpnII GATC 8 cut(s) 32, 102, 197, 212, 255, 366, 532, 579
Eam1104I CTCTTC 3 cut(s) 89, 369, 378
EarI CTCTTC 3 cut(s) 89, 369, 378
Eco47I GGWCC 1 cut(s) 398
EcoRII CCWGG 1 cut(s) 43
EcoT22I ATGCAT 2 cut(s) 300, 357
FaeI CATG 4 cut(s) 326, 359, 439, 571
FaiI YATR 9 cut(s) 83, 85, 312, 324, 357, 363, 437, 473, 569
FaqI GGGAC 1 cut(s) 44
FatI CATG 4 cut(s) 322, 355, 435, 567
FbaI TGATCA 1 cut(s) 532
FokI GGATG 2 cut(s) 147, 458
HaeIII GGCC 1 cut(s) 205
HapII CCGG 1 cut(s) 130
Hin1II CATG 4 cut(s) 326, 359, 439, 571
HinfI GANTC 3 cut(s) 109, 133, 288
HpaII CCGG 1 cut(s) 130
HphI GGTGA 2 cut(s) 287, 434
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 3 cut(s) 7, 523, 532
Hpy188III TCNNGA 4 cut(s) 106, 137, 302, 577
Hpy8I GTNNAC 1 cut(s) 127
HpyAV CCTTC 3 cut(s) 229, 308, 419
HpyCH4III ACNGT 2 cut(s) 182, 509
HpyCH4V TGCA 4 cut(s) 71, 298, 326, 355
Hsp92II CATG 4 cut(s) 326, 359, 439, 571
KpnI GGTACC 1 cut(s) 190
Ksp22I TGATCA 1 cut(s) 532
Kzo9I GATC 8 cut(s) 32, 102, 197, 212, 255, 366, 532, 579
LpnPI CCDG 7 cut(s) 30, 57, 143, 217, 287, 331, 561
LweI GCATC 2 cut(s) 58, 307
MabI ACCWGGT 1 cut(s) 43
MaeIII GTNAC 1 cut(s) 550
MalI GATC 8 cut(s) 34, 104, 199, 214, 257, 368, 534, 581
MboI GATC 8 cut(s) 32, 102, 197, 212, 255, 366, 532, 579
MboII GAAGA 5 cut(s) 106, 290, 386, 395, 490
MflI RGATCY 3 cut(s) 32, 102, 197
MluCI AATT 6 cut(s) 53, 282, 305, 481, 526, 601
MmeI TCCRAC 1 cut(s) 423
MnlI CCTC 5 cut(s) 174, 411, 414, 432, 606
Mph1103I ATGCAT 2 cut(s) 300, 357
MroXI GAANNNNTTC 1 cut(s) 482
MspI CCGG 1 cut(s) 130
MspR9I CCNGG 1 cut(s) 45
MvaI CCWGG 1 cut(s) 45
NdeII GATC 8 cut(s) 32, 102, 197, 212, 255, 366, 532, 579
NlaIII CATG 4 cut(s) 326, 359, 439, 571
NlaIV GGNNCC 1 cut(s) 188
NmeAIII GCCGAG 1 cut(s) 181
NsiI ATGCAT 2 cut(s) 300, 357
NspI RCATGY 1 cut(s) 326
PcsI WCGNNNNNNNCGW 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 482
PfeI GAWTC 3 cut(s) 109, 133, 288
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 188
PspPI GGNCC 1 cut(s) 398
PsuI RGATCY 3 cut(s) 32, 102, 197
RsaI GTAC 2 cut(s) 188, 543
RsaNI GTAC 2 cut(s) 187, 542
Sau3AI GATC 8 cut(s) 32, 102, 197, 212, 255, 366, 532, 579
Sau96I GGNCC 1 cut(s) 398
ScaI AGTACT 1 cut(s) 543
ScrFI CCNGG 1 cut(s) 45
SetI ASST 9 cut(s) 49, 188, 226, 268, 274, 334, 430, 443, 492
SexAI ACCWGGT 1 cut(s) 43
SfaNI GCATC 2 cut(s) 58, 307
SinI GGWCC 1 cut(s) 398
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
Sse9I AATT 6 cut(s) 53, 282, 305, 481, 526, 601
SspI AATATT 1 cut(s) 148
StyD4I CCNGG 1 cut(s) 43
TaaI ACNGT 2 cut(s) 182, 509
TaqI TCGA 2 cut(s) 211, 605
TasI AATT 6 cut(s) 53, 282, 305, 481, 526, 601
TatI WGTACW 1 cut(s) 541
TfiI GAWTC 3 cut(s) 109, 133, 288
TscAI CASTG 1 cut(s) 70
TspDTI ATGAA 4 cut(s) 327, 372, 396, 584
TspRI CASTG 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 398
XapI RAATTY 2 cut(s) 305, 481
XceI RCATGY 1 cut(s) 326
XmnI GAANNNNTTC 1 cut(s) 482
ZrmI AGTACT 1 cut(s) 543
Zsp2I ATGCAT 2 cut(s) 300, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.