Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000064.1

Orthogroup ID

OG0002868

Physical Location & Seq

Genomic Coordinates Forward (+)

187544 .. 188394

Gene Structure 851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000064.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atgatatttttgccttttcaaaatgtagagacgcagttgaacagacatggagaaagagaatggtactttttcactcccagggagcgaaagtacccccatggttcacggccaaatcgaacagcacacgatggattctggaaggtaactggaaaagatgaagtcattacatcagctacaggtgaaataattggatacaaaaatactcttgattactttgaagggacacattcagaaaaccaaaagaccaaatggaaaatgcatgaatatagactaaagaaatcagagagagatgaagatattgctgcttcaaataatgaaaaatgtcaacgtgatatgaagttggatgattgtgttttgtgtaagatttacacaagtaacagatgcaaggccgggaaaagcaccaagaaaattagcaacagtgcaaagaaaccattcaattctgtccaagatagagatgatcagcatgaaaatcaggatcaaccaacttttggtggtgattacaattccaattctcccgctgcatttaacaatggttatggttcgacgaacaaattttgtgaccctgcaaatcttcctctgcaagatcaagcttatggcatcgcccatccttcaggacacatcaataacttcaataatcaaaacaatacacattacaacatgcactcaagttctttggaagatcatgtcagagattttgagcgttggttaattacagccgtgcacgaagaaggcaaaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

246

Amino Acids

28.5

Weight (kDa)

7.19

Isoelectric Point (pI)

31.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23460 FvH4_6g23470
malus_domestica	MD14G1069400.v1.1
prunus_persica	Prupe.7G064900_v2.0.a1 Prupe.7G065000_v2.0.a1
pyrus_communis	pycom12g06060
rosa_chinensis	RchiOBHm_Chr3g0481471 RchiOBHm_Chr3g0481481
rosa_laevigata	RLG00000023394 RLG00000023396 RLG00000023397
rosa_multiflora	Rmu_sc0000064.1_g000029 Rmu_sc0000064.1_g000030 Rmu_sc0000064.1_g000031 Rmu_sc0011674.1_g000001 Rmu_sc0020270.1_g000003 Rmu_sc0021673.1_g000001
rosa_roxburghii	Rroxscaffold_6G00400410 Rroxscaffold_6G00400420 Rroxscaffold_6G00400430
rosa_rugosa	Rorug03G0191900 Rorug03G0192000 Rorug03G0192100
rosa_samantha	Rh3AG243100 Rh3AG243200 Rh3AG243300 Rh3BG278000 Rh3BG278100 Rh3BG278300 Rh3CG273000 Rh3CG273100 Rh3CG273300 Rh3DG270000 Rh3DG270100 Rh3DG270200 Rh3DG270300
rosa_wichuraiana	Rw3G021710 Rw3G021720 Rw3G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	488
AciI	CCGC	1 cut(s)	516
AclWI	GGATC	1 cut(s)	483
AcoI	YGGCCR	1 cut(s)	107
AcsI	RAATTY	1 cut(s)	551
AcuI	CTGAAG	1 cut(s)	594
AfaI	GTAC	2 cut(s)	65, 92
AfiI	CCNNNNNNNGG	1 cut(s)	488
AgsI	TTSAA	6 cut(s)	20, 40, 218, 309, 436, 631
AjnI	CCWGG	1 cut(s)	77
AluBI	AGCT	2 cut(s)	173, 590
AluI	AGCT	2 cut(s)	173, 590
Alw21I	GWGCWC	1 cut(s)	723
Alw26I	GTCTC	1 cut(s)	23
Alw44I	GTGCAC	1 cut(s)	719
AlwI	GGATC	1 cut(s)	483
AoxI	GGCC	2 cut(s)	107, 387
ApaLI	GTGCAC	1 cut(s)	719
ApeKI	GCWGC	2 cut(s)	302, 518
ApoI	RAATTY	1 cut(s)	551
Asp700I	GAANNNNTTC	1 cut(s)	431
AsuC2I	CCSGG	1 cut(s)	391
AsuHPI	GGTGA	2 cut(s)	191, 506
BaeGI	GKGCMC	1 cut(s)	723
Bbv12I	GWGCWC	1 cut(s)	723
BbvI	GCAGC	2 cut(s)	289, 505
BccI	CCATC	2 cut(s)	122, 612
BceAI	ACGGC	2 cut(s)	122, 701
BciT130I	CCWGG	1 cut(s)	79
BciVI	GTATCC	1 cut(s)	185
BclI	TGATCA	1 cut(s)	457
BcnI	CCSGG	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	174
BfuI	GTATCC	1 cut(s)	185
BisI	GCNGC	2 cut(s)	303, 519
BlsI	GCNGC	2 cut(s)	304, 520
Bme1390I	CCNGG	2 cut(s)	79, 391
BmrFI	CCNGG	2 cut(s)	79, 391
BmsI	GCATC	2 cut(s)	371, 606
BpuEI	CTTGAG	1 cut(s)	649
BpuMI	CCSGG	1 cut(s)	391
BsaJI	CCNNGG	3 cut(s)	77, 78, 97
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	488
Bse1I	ACTGG	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	79
BseDI	CCNNGG	3 cut(s)	77, 78, 97
BseGI	GGATG	2 cut(s)	349, 604
BseLI	CCNNNNNNNGG	1 cut(s)	488
BseNI	ACTGG	1 cut(s)	151
BseSI	GKGCMC	1 cut(s)	723
BseXI	GCAGC	2 cut(s)	289, 505
BshFI	GGCC	2 cut(s)	109, 389
BsiHKAI	GWGCWC	1 cut(s)	723
BsiSI	CCGG	1 cut(s)	390
BslFI	GGGAC	1 cut(s)	235
BslI	CCNNNNNNNGG	1 cut(s)	488
BsmAI	GTCTC	1 cut(s)	23
BsmBI	CGTCTC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	235
BsnI	GGCC	2 cut(s)	109, 389
Bsp1286I	GDGCHC	1 cut(s)	723
Bsp143I	GATC	4 cut(s)	457, 475, 583, 679
Bsp19I	CCATGG	1 cut(s)	97
BspACI	CCGC	1 cut(s)	516
BspANI	GGCC	2 cut(s)	109, 389
BspPI	GGATC	1 cut(s)	483
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	3 cut(s)	77, 78, 97
BssMI	GATC	4 cut(s)	457, 475, 583, 679
BssT1I	CCWWGG	1 cut(s)	97
Bst2UI	CCWGG	1 cut(s)	79
Bst4CI	ACNGT	1 cut(s)	419
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	2 cut(s)	349, 604
BstKTI	GATC	4 cut(s)	460, 478, 586, 682
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	4 cut(s)	457, 475, 583, 679
BstNI	CCWGG	1 cut(s)	79
BstNSI	RCATGY	1 cut(s)	661
BstSCI	CCNGG	2 cut(s)	77, 389
BstSFI	CTRYAG	1 cut(s)	174
BstSLI	GKGCMC	1 cut(s)	723
BstV1I	GCAGC	2 cut(s)	289, 505
BsuI	GTATCC	1 cut(s)	185
BsuRI	GGCC	2 cut(s)	109, 389
BtgI	CCRYGG	1 cut(s)	97
BtgZI	GCGATG	1 cut(s)	583
BtsCI	GGATG	2 cut(s)	349, 604
BtsIMutI	CAGTG	1 cut(s)	424
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	2 cut(s)	64, 91
CviAII	CATG	6 cut(s)	47, 98, 260, 464, 658, 683
CviJI	RGCY	5 cut(s)	109, 173, 389, 590, 716
CviKI_1	RGCY	5 cut(s)	109, 173, 389, 590, 716
CviQI	GTAC	2 cut(s)	64, 91
DpnI	GATC	4 cut(s)	459, 477, 585, 681
DpnII	GATC	4 cut(s)	457, 475, 583, 679
EaeI	YGGCCR	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	594
EcoRII	CCWGG	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	97
EcoT22I	ATGCAT	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	97
Esp3I	CGTCTC	1 cut(s)	23
FaeI	CATG	6 cut(s)	50, 101, 263, 467, 661, 686
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	6 cut(s)	46, 97, 259, 463, 657, 682
FauI	CCCGC	1 cut(s)	523
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	2 cut(s)	303, 519
FokI	GGATG	2 cut(s)	356, 591
Fsp4HI	GCNGC	2 cut(s)	303, 519
GluI	GCNGC	2 cut(s)	303, 519
HaeIII	GGCC	2 cut(s)	109, 389
HapII	CCGG	1 cut(s)	390
HgaI	GACGC	1 cut(s)	40
Hin1II	CATG	6 cut(s)	50, 101, 263, 467, 661, 686
HincII	GTYRAC	1 cut(s)	326
HindII	GTYRAC	1 cut(s)	326
HindIII	AAGCTT	1 cut(s)	588
HinfI	GANTC	1 cut(s)	132
HpaII	CCGG	1 cut(s)	390
HphI	GGTGA	2 cut(s)	191, 506
Hpy166II	GTNNAC	3 cut(s)	104, 326, 721
Hpy188I	TCNGA	3 cut(s)	232, 283, 689
Hpy188III	TCNNGA	4 cut(s)	136, 206, 473, 612
Hpy8I	GTNNAC	3 cut(s)	104, 326, 721
Hpy99I	CGWCG	1 cut(s)	547
HpyAV	CCTTC	4 cut(s)	133, 212, 618, 722
HpyCH4III	ACNGT	1 cut(s)	419
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	8 cut(s)	259, 384, 422, 521, 566, 580, 661, 721
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	6 cut(s)	50, 101, 263, 467, 661, 686
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	4 cut(s)	457, 475, 583, 679
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	9 cut(s)	64, 91, 121, 132, 162, 403, 458, 576, 597
Lsp1109I	GCAGC	2 cut(s)	289, 505
LweI	GCATC	2 cut(s)	371, 606
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	3 cut(s)	142, 374, 557
MalI	GATC	4 cut(s)	459, 477, 585, 681
MboI	GATC	4 cut(s)	457, 475, 583, 679
MboII	GAAGA	4 cut(s)	305, 563, 689, 737
MhlI	GDGCHC	1 cut(s)	723
MluCI	AATT	7 cut(s)	186, 408, 436, 502, 508, 551, 708
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	1 cut(s)	585
Mph1103I	ATGCAT	1 cut(s)	261
MroXI	GAANNNNTTC	1 cut(s)	431
MseI	TTAA	2 cut(s)	525, 707
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	1 cut(s)	390
MspR9I	CCNGG	2 cut(s)	79, 391
MvaI	CCWGG	1 cut(s)	79
NciI	CCSGG	1 cut(s)	391
NcoI	CCATGG	1 cut(s)	97
NdeII	GATC	4 cut(s)	457, 475, 583, 679
NlaIII	CATG	6 cut(s)	50, 101, 263, 467, 661, 686
NmuCI	GTSAC	1 cut(s)	557
NsiI	ATGCAT	1 cut(s)	261
NspI	RCATGY	1 cut(s)	661
PasI	CCCWGGG	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	431
PfeI	GAWTC	1 cut(s)	132
PflMI	CCANNNNNTGG	1 cut(s)	488
PkrI	GCNGC	2 cut(s)	304, 520
Psp6I	CCWGG	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	77
RsaI	GTAC	2 cut(s)	65, 92
RsaNI	GTAC	2 cut(s)	64, 91
SaqAI	TTAA	2 cut(s)	525, 707
SatI	GCNGC	2 cut(s)	303, 519
Sau3AI	GATC	4 cut(s)	457, 475, 583, 679
ScrFI	CCNGG	2 cut(s)	79, 391
SduI	GDGCHC	1 cut(s)	723
SetI	ASST	5 cut(s)	144, 175, 181, 331, 592
SfaNI	GCATC	2 cut(s)	371, 606
SfcI	CTRYAG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	664
SmoI	CTYRAG	1 cut(s)	664
Sse9I	AATT	7 cut(s)	186, 408, 436, 502, 508, 551, 708
SsiI	CCGC	1 cut(s)	516
StyD4I	CCNGG	2 cut(s)	77, 389
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	1 cut(s)	419
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	2 cut(s)	115, 542
TasI	AATT	7 cut(s)	186, 408, 436, 502, 508, 551, 708
TfiI	GAWTC	1 cut(s)	132
Tru1I	TTAA	2 cut(s)	525, 707
Tru9I	TTAA	2 cut(s)	525, 707
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	1 cut(s)	557
TseI	GCWGC	2 cut(s)	302, 518
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	6 cut(s)	171, 276, 306, 330, 350, 480
TspRI	CASTG	1 cut(s)	424
Van91I	CCANNNNNTGG	1 cut(s)	488
VneI	GTGCAC	1 cut(s)	719
XapI	RAATTY	1 cut(s)	551
XceI	RCATGY	1 cut(s)	661
XmnI	GAANNNNTTC	1 cut(s)	431
Zsp2I	ATGCAT	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.