Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000064.1

Orthogroup ID

OG0002868

Physical Location & Seq

Genomic Coordinates Forward (+)

190101 .. 192079

Gene Structure 1979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000064.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

atgtctgatggagagattgatgattattttagatcttttccaccaggttatcaatttgtccccactgatgcagagttgattatatattatttgaagagaaagatcttgaatcaacaactacccgtgaaccggattcgtgatgagaatatttatcactaccatcctcaaactcttgctgaaatgtatccgagaattagagaaattgaatggtactttttctcttccagagaccgaaggtaccccaatggatctcggcctaatcgatcagcaaaaggtggatactggaaggcaacgaaaagagatgagatcatcacagctcaaggtggtgaagaaattggattcaaaatgcatctggaattttatgaaggaacacatgcacaaggtagaaagacaaactggaaaatgcatgaatataggatcaaagaagagaatgaagagaatgatattggtcctcctcaaaataccaacaagggtgaaggtatcagcatgaggttggatgattgggttttgtgtaagatttacataaagaagaatttcaaggttgatacagacagcaacagtttaaagacatcagacaattctgatcaagtagtactcccagtaacaaatgttacaacatctcgtgattgtcaaaataaattagctattcagcatgaagttcaagatcaatctctcaatgcctcacaattcgaccacaatggcttctcaactttgacgaactatcgtgatgtagaatccagcagcagcaacttctggaatcaaaactacacagatgattacgacacgtacttgatgcagatgagtcgagatccattatcgtcacgattcttttcttctccgtttcccttgcaatcttcaacagaccagatttgcacagaattggagcctgtagatgataagatatcagaggtcgatccaagttctatgttacctgcgcatgtcagagaatgtgatgagaatatgtcagagaataagaatcaaaactatacagatgattacgacacgtacttgatgcagatgagtcgagatccatcgtcgtcacgattattttcttctccgtttcccttgcaatcttcaacagaccagatttgcgcaggattggagcctgtagatgataagatatcacaggtcgatccaagttctattgtgttacctgcgcatgtcagagaatatgataatcgtgcatgtaaagccgagcctattcagcctgcagttagggatgaaggtgatgatcatgtgtctaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

415

Amino Acids

48.11

Weight (kDa)

4.89

Isoelectric Point (pI)

59.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23460 FvH4_6g23470
malus_domestica	MD14G1069400.v1.1
prunus_persica	Prupe.7G064900_v2.0.a1 Prupe.7G065000_v2.0.a1
pyrus_communis	pycom12g06060
rosa_chinensis	RchiOBHm_Chr3g0481471 RchiOBHm_Chr3g0481481
rosa_laevigata	RLG00000023394 RLG00000023396 RLG00000023397
rosa_multiflora	Rmu_sc0000064.1_g000029 Rmu_sc0000064.1_g000030 Rmu_sc0000064.1_g000031 Rmu_sc0011674.1_g000001 Rmu_sc0020270.1_g000003 Rmu_sc0021673.1_g000001
rosa_roxburghii	Rroxscaffold_6G00400410 Rroxscaffold_6G00400420 Rroxscaffold_6G00400430
rosa_rugosa	Rorug03G0191900 Rorug03G0192000 Rorug03G0192100
rosa_samantha	Rh3AG243100 Rh3AG243200 Rh3AG243300 Rh3BG278000 Rh3BG278100 Rh3BG278300 Rh3CG273000 Rh3CG273100 Rh3CG273300 Rh3DG270000 Rh3DG270100 Rh3DG270200 Rh3DG270300
rosa_wichuraiana	Rw3G021710 Rw3G021720 Rw3G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	3 cut(s)	936, 1093, 1158
Acc36I	ACCTGC	2 cut(s)	940, 1162
Acc65I	GGTACC	1 cut(s)	237
AccB1I	GGYRCC	1 cut(s)	237
AclWI	GGATC	6 cut(s)	256, 425, 803, 908, 1022, 1127
AcsI	RAATTY	2 cut(s)	356, 532
AfaI	GTAC	5 cut(s)	212, 239, 594, 788, 1007
AfiI	CCNNNNNNNGG	1 cut(s)	129
AflIII	ACRYGT	2 cut(s)	783, 1002
AgsI	TTSAA	8 cut(s)	94, 109, 206, 343, 538, 662, 858, 1077
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	2 cut(s)	317, 644
AluI	AGCT	2 cut(s)	317, 644
Alw26I	GTCTC	1 cut(s)	222
AlwI	GGATC	6 cut(s)	256, 425, 803, 908, 1022, 1127
AoxI	GGCC	1 cut(s)	254
ApeKI	GCWGC	2 cut(s)	741, 744
ApoI	RAATTY	2 cut(s)	356, 532
Asp700I	GAANNNNTTC	1 cut(s)	533
Asp718I	GGTACC	1 cut(s)	237
AspLEI	GCGC	3 cut(s)	937, 1094, 1159
AspS9I	GGNCC	1 cut(s)	449
AsuHPI	GGTGA	3 cut(s)	338, 485, 1238
AvaII	GGWCC	1 cut(s)	449
BanI	GGYRCC	1 cut(s)	237
BauI	CACGAG	1 cut(s)	621
BbvI	GCAGC	2 cut(s)	753, 756
BccI	CCATC	3 cut(s)	2, 168, 1039
BcgI	CGANNNNNNTGC	4 cut(s)	785, 819, 1004, 1038
BciT130I	CCWGG	1 cut(s)	45
BciVI	GTATCC	2 cut(s)	195, 272
BclI	TGATCA	2 cut(s)	583, 1231
BcoDI	GTCTC	1 cut(s)	222
BfmI	CTRYAG	3 cut(s)	888, 1107, 1209
BfuAI	ACCTGC	2 cut(s)	940, 1162
BfuI	GTATCC	2 cut(s)	195, 272
BglII	AGATCT	2 cut(s)	32, 102
BisI	GCNGC	2 cut(s)	742, 745
BlsI	GCNGC	2 cut(s)	743, 746
BmcAI	AGTACT	1 cut(s)	594
Bme1390I	CCNGG	1 cut(s)	45
Bme18I	GGWCC	1 cut(s)	449
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	3 cut(s)	239, 885, 1104
BmrFI	CCNGG	1 cut(s)	45
BmrI	ACTGGG	1 cut(s)	593
BmsI	GCATC	4 cut(s)	58, 358, 783, 1002
BmuI	ACTGGG	1 cut(s)	593
BpuEI	CTTGAG	1 cut(s)	303
Bsa29I	ATCGAT	1 cut(s)	262
BsaAI	YACGTR	2 cut(s)	786, 1005
BsaI	GGTCTC	1 cut(s)	222
BsaWI	WCCGGW	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
Bse1I	ACTGG	3 cut(s)	287, 401, 599
BseBI	CCWGG	1 cut(s)	45
BseCI	ATCGAT	1 cut(s)	262
BseGI	GGATG	3 cut(s)	160, 502, 1225
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseNI	ACTGG	3 cut(s)	287, 401, 599
BseRI	GAGGAG	1 cut(s)	444
BseXI	GCAGC	2 cut(s)	753, 756
BshFI	GGCC	1 cut(s)	256
BshNI	GGYRCC	1 cut(s)	237
BshVI	ATCGAT	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	130
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmAI	GTCTC	1 cut(s)	222
BsmFI	GGGAC	1 cut(s)	44
BsnI	GGCC	1 cut(s)	256
Bso31I	GGTCTC	1 cut(s)	222
BspANI	GGCC	1 cut(s)	256
BspDI	ATCGAT	1 cut(s)	262
BspLI	GGNNCC	3 cut(s)	239, 885, 1104
BspMAI	CTGCAG	1 cut(s)	1213
BspMI	ACCTGC	2 cut(s)	940, 1162
BspPI	GGATC	6 cut(s)	256, 425, 803, 908, 1022, 1127
BspT107I	GGYRCC	1 cut(s)	237
BspTNI	GGTCTC	1 cut(s)	222
BsrI	ACTGG	3 cut(s)	287, 401, 599
BssSI	CACGAG	1 cut(s)	621
Bst2BI	CACGAG	1 cut(s)	621
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	560
Bst6I	CTCTTC	4 cut(s)	89, 226, 420, 429
BstBAI	YACGTR	2 cut(s)	786, 1005
BstC8I	GCNNGC	1 cut(s)	1209
BstF5I	GGATG	3 cut(s)	160, 502, 1225
BstHHI	GCGC	3 cut(s)	937, 1094, 1159
BstMAI	GTCTC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	2 cut(s)	1190, 1204
BstNI	CCWGG	1 cut(s)	45
BstNSI	RCATGY	4 cut(s)	377, 941, 1163, 1188
BstSCI	CCNGG	1 cut(s)	43
BstSFI	CTRYAG	3 cut(s)	888, 1107, 1209
BstV1I	GCAGC	2 cut(s)	753, 756
BstX2I	RGATCY	5 cut(s)	32, 102, 248, 808, 1027
BstYI	RGATCY	5 cut(s)	32, 102, 248, 808, 1027
Bsu15I	ATCGAT	1 cut(s)	262
BsuI	GTATCC	2 cut(s)	195, 272
BsuRI	GGCC	1 cut(s)	256
BsuTUI	ATCGAT	1 cut(s)	262
BtsCI	GGATG	3 cut(s)	160, 502, 1225
BtsIMutI	CAGTG	1 cut(s)	63
BveI	ACCTGC	2 cut(s)	940, 1162
Cac8I	GCNNGC	1 cut(s)	1209
CfoI	GCGC	3 cut(s)	937, 1094, 1159
Cfr13I	GGNCC	1 cut(s)	449
ClaI	ATCGAT	1 cut(s)	262
CsiI	ACCWGGT	1 cut(s)	43
Csp6I	GTAC	5 cut(s)	211, 238, 593, 787, 1006
CviAII	CATG	8 cut(s)	374, 407, 487, 653, 938, 1160, 1185, 1235
CviJI	RGCY	9 cut(s)	256, 317, 644, 702, 886, 1105, 1193, 1198, 1207
CviKI_1	RGCY	9 cut(s)	256, 317, 644, 702, 886, 1105, 1193, 1198, 1207
CviQI	GTAC	5 cut(s)	211, 238, 593, 787, 1006
DraI	TTTAAA	1 cut(s)	564
Eam1104I	CTCTTC	4 cut(s)	89, 226, 420, 429
EarI	CTCTTC	4 cut(s)	89, 226, 420, 429
Eco31I	GGTCTC	1 cut(s)	222
Eco32I	GATATC	2 cut(s)	903, 1122
Eco47I	GGWCC	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	43
EcoRV	GATATC	2 cut(s)	903, 1122
EcoT22I	ATGCAT	2 cut(s)	351, 408
FaeI	CATG	8 cut(s)	377, 410, 490, 656, 941, 1163, 1188, 1238
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	8 cut(s)	373, 406, 486, 652, 937, 1159, 1184, 1234
FbaI	TGATCA	2 cut(s)	583, 1231
Fnu4HI	GCNGC	2 cut(s)	742, 745
FokI	GGATG	3 cut(s)	147, 509, 1232
Fsp4HI	GCNGC	2 cut(s)	742, 745
FspI	TGCGCA	3 cut(s)	936, 1093, 1158
GlaI	GCGC	3 cut(s)	936, 1093, 1158
GluI	GCNGC	2 cut(s)	742, 745
HaeIII	GGCC	1 cut(s)	256
HapII	CCGG	1 cut(s)	130
HhaI	GCGC	3 cut(s)	937, 1094, 1159
Hin1II	CATG	8 cut(s)	377, 410, 490, 656, 941, 1163, 1188, 1238
Hin6I	GCGC	3 cut(s)	935, 1092, 1157
HinP1I	GCGC	3 cut(s)	935, 1092, 1157
HinfI	GANTC	9 cut(s)	109, 133, 339, 734, 757, 802, 825, 976, 1021
HpaII	CCGG	1 cut(s)	130
HphI	GGTGA	3 cut(s)	338, 485, 1238
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	8 cut(s)	7, 189, 574, 583, 907, 944, 967, 1166
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	1 cut(s)	1039
HpyAV	CCTTC	5 cut(s)	228, 280, 359, 470, 1217
HpyCH4III	ACNGT	1 cut(s)	560
HpyCH4IV	ACGT	2 cut(s)	785, 1004
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1190, 1204
HpySE526I	ACGT	2 cut(s)	785, 1004
Hsp92II	CATG	8 cut(s)	377, 410, 490, 656, 941, 1163, 1188, 1238
HspAI	GCGC	3 cut(s)	935, 1092, 1157
KpnI	GGTACC	1 cut(s)	241
Ksp22I	TGATCA	2 cut(s)	583, 1231
LmnI	GCTCC	2 cut(s)	883, 1102
Lsp1109I	GCAGC	2 cut(s)	753, 756
LweI	GCATC	4 cut(s)	58, 358, 783, 1002
MabI	ACCWGGT	1 cut(s)	43
MaeII	ACGT	2 cut(s)	785, 1004
MaeIII	GTNAC	6 cut(s)	601, 610, 819, 927, 1038, 1149
MflI	RGATCY	5 cut(s)	32, 102, 248, 808, 1027
MlyI	GAGTC	2 cut(s)	811, 1030
MmeI	TCCRAC	1 cut(s)	474
MnlI	CCTC	6 cut(s)	174, 462, 465, 483, 691, 901
Mph1103I	ATGCAT	2 cut(s)	351, 408
MroXI	GAANNNNTTC	1 cut(s)	533
MseI	TTAA	1 cut(s)	563
MspI	CCGG	1 cut(s)	130
MspR9I	CCNGG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	1190, 1204
NlaIII	CATG	8 cut(s)	377, 410, 490, 656, 941, 1163, 1188, 1238
NlaIV	GGNNCC	3 cut(s)	239, 885, 1104
NmeAIII	GCCGAG	2 cut(s)	232, 1219
NmuCI	GTSAC	2 cut(s)	819, 1038
NsbI	TGCGCA	3 cut(s)	936, 1093, 1158
NsiI	ATGCAT	2 cut(s)	351, 408
NspI	RCATGY	4 cut(s)	377, 941, 1163, 1188
PcsI	WCGNNNNNNNCGW	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	533
PfeI	GAWTC	7 cut(s)	109, 133, 339, 734, 757, 825, 976
PkrI	GCNGC	2 cut(s)	743, 746
PleI	GAGTC	2 cut(s)	810, 1029
PpsI	GAGTC	2 cut(s)	810, 1029
Ppu21I	YACGTR	2 cut(s)	786, 1005
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	3 cut(s)	239, 885, 1104
PspPI	GGNCC	1 cut(s)	449
PstI	CTGCAG	1 cut(s)	1213
PsuI	RGATCY	5 cut(s)	32, 102, 248, 808, 1027
RsaI	GTAC	5 cut(s)	212, 239, 594, 788, 1007
RsaNI	GTAC	5 cut(s)	211, 238, 593, 787, 1006
SaqAI	TTAA	1 cut(s)	563
SatI	GCNGC	2 cut(s)	742, 745
Sau96I	GGNCC	1 cut(s)	449
ScaI	AGTACT	1 cut(s)	594
SchI	GAGTC	2 cut(s)	811, 1030
ScrFI	CCNGG	1 cut(s)	45
SexAI	ACCWGGT	1 cut(s)	43
SfaNI	GCATC	4 cut(s)	58, 358, 783, 1002
SfcI	CTRYAG	3 cut(s)	888, 1107, 1209
SinI	GGWCC	1 cut(s)	449
SmlI	CTYRAG	1 cut(s)	318
SmoI	CTYRAG	1 cut(s)	318
SspI	AATATT	1 cut(s)	148
StyD4I	CCNGG	1 cut(s)	43
TaaI	ACNGT	1 cut(s)	560
TaiI	ACGT	2 cut(s)	788, 1007
TaqI	TCGA	6 cut(s)	262, 690, 805, 912, 1024, 1131
TaqII	GACCGA	1 cut(s)	246
TatI	WGTACW	1 cut(s)	592
TfiI	GAWTC	7 cut(s)	109, 133, 339, 734, 757, 825, 976
Tru1I	TTAA	1 cut(s)	563
Tru9I	TTAA	1 cut(s)	563
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	2 cut(s)	819, 1038
TseI	GCWGC	2 cut(s)	741, 744
Tsp45I	GTSAC	2 cut(s)	819, 1038
TspDTI	ATGAA	5 cut(s)	378, 423, 447, 669, 1236
TspGWI	ACGGA	2 cut(s)	828, 1047
TspRI	CASTG	1 cut(s)	70
VpaK11BI	GGWCC	1 cut(s)	449
XapI	RAATTY	2 cut(s)	356, 532
XceI	RCATGY	4 cut(s)	377, 941, 1163, 1188
XmnI	GAANNNNTTC	1 cut(s)	533
ZrmI	AGTACT	1 cut(s)	594
Zsp2I	ATGCAT	2 cut(s)	351, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.