Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002868

Physical Location & Seq

Genomic Coordinates Reverse (-)

10338166 .. 10339835

Gene Structure 1670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G065000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGGAGAAAACAATCGGTTCATCAACGATCCGATTCCGGAACAAGTAGATTTGTTCATCAACGATCCAACCAACGATGCATATTTTAATTCTCTTCCATGTGGCTATCGATTTGCCCCAACTGATGCCGAGTTGGTTTCAAGCTACTTAGAGGGGAAGGTCTTGAACAAGGAAATCCCCAAAAACAGGTTTCTTGACCTTGACATCTCCTTGTATCATCCTAGAGACCTCACTGGGCGCATCACTTTAATTAGAGAAAGTGAGTGGTATTTTTTCACTTCTAGGAAACGAAAGTATCCGAAAGGACAACGGCCAGATCGATCAGCAGTCGATGGATTTTGGAAGGCAACCGGAAAAGCTCAGGACATCGAAGATAGTAATGGTAAAGTAATTGGGTCCAAAAGGACTCTAGATTTTTATCAAGGGAACCATCAAGATGGCAAGAGGACAGAATGGAAAATGCATGAATACACGCTCGATGCTCCTCCTAATGAAATAAGCAATACTCGTGTTACGCAGCTGGATAATTGTGTTTTGTGCAAGATTTACAAGAATAACAAAGGCGGGAACAATGACTCGAGCACTACACAATCTGATCAAAGAGCAGAGCCATCTACAAATGTTGTAGCATCTCAAGCTTTTCCAGACCAACAAATCCAGCCCGTTCATCAGCATGATCAATATCTTGTTAGTCAATCTAGCGGTGCTTCTTCTTCCTCCACTGCAAACAAACGACCTCGTGGCAGGCCAACCCCAACAATATTGAACACCTACGTTGGAAACCCTACATATTATCCTCACCAGCAGTACCCTTTCCAAAATCAAACGTCTGGCAATCCTCCGGGACCAGTCCACAACAACTATCAAAACCTCACCCAATACAATCAAAACGATCAAAACCTCACCCAATACGATCAAAACGATCAAAACCTCACCCAATACGCTCAAAACGATCAAAATCTCACCCAATACGATCAAAACGATCAAAACCTCACCCAATACGACACGCAGTCTGCCAATATTGAGAGCCATGTTCAGCCAAGGGAGTCGTTTTCTTCTCAACCTGGATTTTTGCCACACATGGAGACTTCCACGTATGCGGATCAAATGCCACTGGTTGATTCAAGTTCTATGCAGTTACCTGTGCATGTCAGGCTATATGAGCAACTACTTGCGGCTAGAAACAAGGATGGTGATTTCGACAAAAGACTAGAGCATTGGTATCATCATCAACAGCAGTTGTTTAGGCAAAACCCTAGCAGTACACCAAATTGTAAATTAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

429

Amino Acids

49.2

Weight (kDa)

5.91

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23460 FvH4_6g23470
malus_domestica	MD14G1069400.v1.1
prunus_persica	Prupe.7G064900_v2.0.a1 Prupe.7G065000_v2.0.a1
pyrus_communis	pycom12g06060
rosa_chinensis	RchiOBHm_Chr3g0481471 RchiOBHm_Chr3g0481481
rosa_laevigata	RLG00000023394 RLG00000023396 RLG00000023397
rosa_multiflora	Rmu_sc0000064.1_g000029 Rmu_sc0000064.1_g000030 Rmu_sc0000064.1_g000031 Rmu_sc0011674.1_g000001 Rmu_sc0020270.1_g000003 Rmu_sc0021673.1_g000001
rosa_roxburghii	Rroxscaffold_6G00400410 Rroxscaffold_6G00400420 Rroxscaffold_6G00400430
rosa_rugosa	Rorug03G0191900 Rorug03G0192000 Rorug03G0192100
rosa_samantha	Rh3AG243100 Rh3AG243200 Rh3AG243300 Rh3BG278000 Rh3BG278100 Rh3BG278300 Rh3CG273000 Rh3CG273100 Rh3CG273300 Rh3DG270000 Rh3DG270100 Rh3DG270200 Rh3DG270300
rosa_wichuraiana	Rw3G021710 Rw3G021720 Rw3G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	37
AciI	CCGC	4 cut(s)	564, 702, 1100, 1175
AclWI	GGATC	3 cut(s)	23, 59, 1110
AcoI	YGGCCR	1 cut(s)	311
AfaI	GTAC	2 cut(s)	809, 1264
AfiI	CCNNNNNNNGG	1 cut(s)	186
AgsI	TTSAA	4 cut(s)	141, 166, 766, 1125
AhdI	GACNNNNNGTC	1 cut(s)	1009
AjnI	CCWGG	1 cut(s)	1063
AluBI	AGCT	4 cut(s)	144, 359, 520, 638
AluI	AGCT	4 cut(s)	144, 359, 520, 638
Alw21I	GWGCWC	1 cut(s)	584
Alw26I	GTCTC	2 cut(s)	219, 1079
AlwI	GGATC	3 cut(s)	23, 59, 1110
Ama87I	CYCGRG	1 cut(s)	577
Aor13HI	TCCGGA	1 cut(s)	37
AoxI	GGCC	2 cut(s)	311, 746
ApeKI	GCWGC	1 cut(s)	517
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	2 cut(s)	396, 845
AsuC2I	CCSGG	1 cut(s)	843
AsuHPI	GGTGA	7 cut(s)	791, 865, 895, 925, 955, 985, 1205
AvaI	CYCGRG	1 cut(s)	577
AvaII	GGWCC	2 cut(s)	396, 845
BaeI	ACNNNNGTAYC	2 cut(s)	278, 311
BauI	CACGAG	2 cut(s)	507, 738
Bbv12I	GWGCWC	1 cut(s)	584
BbvI	GCAGC	1 cut(s)	529
BccI	CCATC	5 cut(s)	326, 431, 438, 619, 1184
BceAI	ACGGC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	1065
BciVI	GTATCC	1 cut(s)	306
BclI	TGATCA	2 cut(s)	595, 676
BcnI	CCSGG	1 cut(s)	843
BcoDI	GTCTC	2 cut(s)	219, 1079
BfaI	CTAG	8 cut(s)	222, 282, 410, 699, 1179, 1211, 1257, 1285
BfuI	GTATCC	1 cut(s)	306
BisI	GCNGC	2 cut(s)	518, 1176
BlsI	GCNGC	2 cut(s)	519, 1177
Bme1390I	CCNGG	2 cut(s)	843, 1065
Bme18I	GGWCC	2 cut(s)	396, 845
BmeRI	GACNNNNNGTC	1 cut(s)	1009
BmeT110I	CYCGRG	1 cut(s)	577
BmgT120I	GGNCC	2 cut(s)	396, 845
BmiI	GGNNCC	3 cut(s)	397, 428, 846
BmrFI	CCNGG	2 cut(s)	843, 1065
BmrI	ACTGGG	1 cut(s)	243
BmsI	GCATC	5 cut(s)	67, 115, 249, 469, 638
BmuI	ACTGGG	1 cut(s)	243
Bpu10I	CCTNAGC	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	618
BpuMI	CCSGG	1 cut(s)	843
Bsa29I	ATCGAT	2 cut(s)	109, 319
BsaAI	YACGTR	1 cut(s)	1095
BsaBI	GATNNNNATC	3 cut(s)	417, 681, 957
BsaI	GGTCTC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	1040
BsaWI	WCCGGW	2 cut(s)	37, 350
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse1I	ACTGG	3 cut(s)	238, 848, 1119
Bse8I	GATNNNNATC	3 cut(s)	417, 681, 957
BseAI	TCCGGA	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	1065
BseCI	ATCGAT	2 cut(s)	109, 319
BseDI	CCNNGG	1 cut(s)	1040
BseGI	GGATG	2 cut(s)	217, 1195
BseJI	GATNNNNATC	3 cut(s)	417, 681, 957
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMII	CTCAG	1 cut(s)	374
BseNI	ACTGG	3 cut(s)	238, 848, 1119
BseRI	GAGGAG	1 cut(s)	474
BseXI	GCAGC	1 cut(s)	529
BshFI	GGCC	2 cut(s)	313, 748
BshVI	ATCGAT	2 cut(s)	109, 319
BsiHKAI	GWGCWC	1 cut(s)	584
BsiHKCI	CYCGRG	1 cut(s)	577
BsiSI	CCGG	3 cut(s)	38, 351, 842
BslFI	GGGAC	1 cut(s)	858
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmAI	GTCTC	2 cut(s)	219, 1079
BsmFI	GGGAC	1 cut(s)	858
BsnI	GGCC	2 cut(s)	313, 748
Bso31I	GGTCTC	1 cut(s)	219
BsoBI	CYCGRG	1 cut(s)	577
Bsp1286I	GDGCHC	1 cut(s)	584
Bsp13I	TCCGGA	1 cut(s)	37
BspACI	CCGC	4 cut(s)	564, 702, 1100, 1175
BspANI	GGCC	2 cut(s)	313, 748
BspCNI	CTCAG	1 cut(s)	373
BspDI	ATCGAT	2 cut(s)	109, 319
BspEI	TCCGGA	1 cut(s)	37
BspLI	GGNNCC	3 cut(s)	397, 428, 846
BspPI	GGATC	3 cut(s)	23, 59, 1110
BspTNI	GGTCTC	1 cut(s)	219
BsrI	ACTGG	3 cut(s)	238, 848, 1119
BssECI	CCNNGG	1 cut(s)	1040
BssSI	CACGAG	2 cut(s)	507, 738
BssT1I	CCWWGG	1 cut(s)	1040
Bst2BI	CACGAG	2 cut(s)	507, 738
Bst2UI	CCWGG	1 cut(s)	1065
Bst6I	CTCTTC	1 cut(s)	99
BstBAI	YACGTR	1 cut(s)	1095
BstC8I	GCNNGC	1 cut(s)	746
BstDEI	CTNAG	2 cut(s)	148, 360
BstF5I	GGATG	2 cut(s)	217, 1195
BstHHI	GCGC	1 cut(s)	240
BstMAI	GTCTC	2 cut(s)	219, 1079
BstMWI	GCNNNNNNNGC	3 cut(s)	635, 1153, 1162
BstNI	CCWGG	1 cut(s)	1065
BstNSI	RCATGY	1 cut(s)	1151
BstSCI	CCNGG	2 cut(s)	841, 1063
BstV1I	GCAGC	1 cut(s)	529
BstXI	CCANNNNNNTGG	1 cut(s)	437
Bsu15I	ATCGAT	2 cut(s)	109, 319
BsuI	GTATCC	1 cut(s)	306
BsuRI	GGCC	2 cut(s)	313, 748
BsuTUI	ATCGAT	2 cut(s)	109, 319
BtsCI	GGATG	2 cut(s)	217, 1195
BtsI	GCAGTG	1 cut(s)	720
BtsIMutI	CAGTG	3 cut(s)	231, 720, 1112
Cac8I	GCNNGC	1 cut(s)	746
CfoI	GCGC	1 cut(s)	240
Cfr13I	GGNCC	2 cut(s)	396, 845
ClaI	ATCGAT	2 cut(s)	109, 319
Csp6I	GTAC	2 cut(s)	808, 1263
CviAII	CATG	6 cut(s)	99, 464, 674, 1031, 1081, 1148
CviQI	GTAC	2 cut(s)	808, 1263
DdeI	CTNAG	2 cut(s)	148, 360
DriI	GACNNNNNGTC	1 cut(s)	1009
EaeI	YGGCCR	1 cut(s)	311
Eam1104I	CTCTTC	1 cut(s)	99
Eam1105I	GACNNNNNGTC	1 cut(s)	1009
EarI	CTCTTC	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	1040
Eco31I	GGTCTC	1 cut(s)	219
Eco47I	GGWCC	2 cut(s)	396, 845
Eco88I	CYCGRG	1 cut(s)	577
EcoRII	CCWGG	1 cut(s)	1063
EcoT14I	CCWWGG	1 cut(s)	1040
EcoT22I	ATGCAT	2 cut(s)	82, 465
ErhI	CCWWGG	1 cut(s)	1040
FaeI	CATG	6 cut(s)	102, 467, 677, 1034, 1084, 1151
FaqI	GGGAC	1 cut(s)	858
FatI	CATG	6 cut(s)	98, 463, 673, 1030, 1080, 1147
FauI	CCCGC	1 cut(s)	557
FbaI	TGATCA	2 cut(s)	595, 676
Fnu4HI	GCNGC	2 cut(s)	518, 1176
FokI	GGATG	2 cut(s)	204, 1202
Fsp4HI	GCNGC	2 cut(s)	518, 1176
FspBI	CTAG	8 cut(s)	222, 282, 410, 699, 1179, 1211, 1257, 1285
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	2 cut(s)	518, 1176
HaeIII	GGCC	2 cut(s)	313, 748
HapII	CCGG	3 cut(s)	38, 351, 842
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	6 cut(s)	102, 467, 677, 1034, 1084, 1151
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HindIII	AAGCTT	1 cut(s)	636
HinfI	GANTC	5 cut(s)	34, 406, 575, 1046, 1121
HpaII	CCGG	3 cut(s)	38, 351, 842
HphI	GGTGA	7 cut(s)	791, 865, 895, 925, 955, 985, 1205
Hpy166II	GTNNAC	2 cut(s)	853, 1265
Hpy188I	TCNGA	3 cut(s)	33, 300, 595
Hpy188III	TCNNGA	7 cut(s)	38, 163, 194, 362, 410, 434, 644
Hpy8I	GTNNAC	2 cut(s)	853, 1265
HpyAV	CCTTC	2 cut(s)	151, 337
HpyCH4IV	ACGT	3 cut(s)	774, 827, 1094
HpyCH4V	TGCA	6 cut(s)	80, 463, 540, 725, 1135, 1147
HpyF10VI	GCNNNNNNNGC	3 cut(s)	635, 1153, 1162
HpyF3I	CTNAG	2 cut(s)	148, 360
HpySE526I	ACGT	3 cut(s)	774, 827, 1094
Hsp92II	CATG	6 cut(s)	102, 467, 677, 1034, 1084, 1151
HspAI	GCGC	1 cut(s)	238
Kpn2I	TCCGGA	1 cut(s)	37
Ksp22I	TGATCA	2 cut(s)	595, 676
LmnI	GCTCC	1 cut(s)	487
Lsp1109I	GCAGC	1 cut(s)	529
LweI	GCATC	5 cut(s)	67, 115, 249, 469, 638
MaeI	CTAG	8 cut(s)	222, 282, 410, 699, 1179, 1211, 1257, 1285
MaeII	ACGT	3 cut(s)	774, 827, 1094
MaeIII	GTNAC	2 cut(s)	511, 1137
MboII	GAAGA	5 cut(s)	86, 383, 702, 705, 1047
MhlI	GDGCHC	1 cut(s)	584
MluCI	AATT	6 cut(s)	88, 249, 390, 526, 1270, 1277
MlyI	GAGTC	3 cut(s)	400, 569, 1055
MmeI	TCCRAC	2 cut(s)	92, 757
Mph1103I	ATGCAT	2 cut(s)	82, 465
MroI	TCCGGA	1 cut(s)	37
MseI	TTAA	2 cut(s)	87, 248
MslI	CAYNNNNRTG	2 cut(s)	435, 672
MspA1I	CMGCKG	1 cut(s)	520
MspI	CCGG	3 cut(s)	38, 351, 842
MspR9I	CCNGG	2 cut(s)	843, 1065
MvaI	CCWGG	1 cut(s)	1065
MwoI	GCNNNNNNNGC	3 cut(s)	635, 1153, 1162
NciI	CCSGG	1 cut(s)	843
NlaIII	CATG	6 cut(s)	102, 467, 677, 1034, 1084, 1151
NlaIV	GGNNCC	3 cut(s)	397, 428, 846
NmeAIII	GCCGAG	1 cut(s)	154
NsiI	ATGCAT	2 cut(s)	82, 465
NspI	RCATGY	1 cut(s)	1151
PaeR7I	CTCGAG	1 cut(s)	577
PcsI	WCGNNNNNNNCGW	4 cut(s)	316, 918, 948, 978
PfeI	GAWTC	2 cut(s)	34, 1121
PfoI	TCCNGGA	1 cut(s)	841
PkrI	GCNGC	2 cut(s)	519, 1177
PleI	GAGTC	3 cut(s)	400, 569, 1054
PpsI	GAGTC	3 cut(s)	400, 569, 1054
Ppu21I	YACGTR	1 cut(s)	1095
Psp6I	CCWGG	1 cut(s)	1063
PspGI	CCWGG	1 cut(s)	1063
PspN4I	GGNNCC	3 cut(s)	397, 428, 846
PspPI	GGNCC	2 cut(s)	396, 845
PspXI	VCTCGAGB	1 cut(s)	577
PvuII	CAGCTG	1 cut(s)	520
RsaI	GTAC	2 cut(s)	809, 1264
RsaNI	GTAC	2 cut(s)	808, 1263
RseI	CAYNNNNRTG	2 cut(s)	435, 672
SaqAI	TTAA	2 cut(s)	87, 248
SatI	GCNGC	2 cut(s)	518, 1176
Sau96I	GGNCC	2 cut(s)	396, 845
SchI	GAGTC	3 cut(s)	400, 569, 1055
ScrFI	CCNGG	2 cut(s)	843, 1065
SduI	GDGCHC	1 cut(s)	584
SfaNI	GCATC	5 cut(s)	67, 115, 249, 469, 638
Sfr274I	CTCGAG	1 cut(s)	577
SinI	GGWCC	2 cut(s)	396, 845
SlaI	CTCGAG	1 cut(s)	577
SmiMI	CAYNNNNRTG	2 cut(s)	435, 672
SmlI	CTYRAG	2 cut(s)	577, 633
SmoI	CTYRAG	2 cut(s)	577, 633
Sse9I	AATT	6 cut(s)	88, 249, 390, 526, 1270, 1277
SsiI	CCGC	4 cut(s)	564, 702, 1100, 1175
SspI	AATATT	2 cut(s)	762, 1021
SspMI	CTAG	8 cut(s)	222, 282, 410, 699, 1179, 1211, 1257, 1285
StyD4I	CCNGG	2 cut(s)	841, 1063
StyI	CCWWGG	1 cut(s)	1040
TaiI	ACGT	3 cut(s)	777, 830, 1097
TaqI	TCGA	7 cut(s)	109, 319, 330, 369, 477, 578, 1200
TasI	AATT	6 cut(s)	88, 249, 390, 526, 1270, 1277
TatI	WGTACW	1 cut(s)	1262
TauI	GCSGC	1 cut(s)	1178
TfiI	GAWTC	2 cut(s)	34, 1121
Tru1I	TTAA	2 cut(s)	87, 248
Tru9I	TTAA	2 cut(s)	87, 248
TscAI	CASTG	3 cut(s)	238, 727, 1119
TseI	GCWGC	1 cut(s)	517
TspDTI	ATGAA	5 cut(s)	10, 46, 480, 507, 656
TspRI	CASTG	3 cut(s)	238, 727, 1119
VpaK11BI	GGWCC	2 cut(s)	396, 845
XbaI	TCTAGA	1 cut(s)	409
XceI	RCATGY	1 cut(s)	1151
XhoI	CTCGAG	1 cut(s)	577
XspI	CTAG	8 cut(s)	222, 282, 410, 699, 1179, 1211, 1257, 1285
Zsp2I	ATGCAT	2 cut(s)	82, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.