FvH4_6g35582

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000623
Physical Location & Seq
Reverse (-)
28089269 .. 28090389
1121 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g35582.t1

Sequence Viewer

Length: 429 bp
ATGGCCCAATCCTCATCGAATCCTGTAGTTGAATTGAATGGAGAGGAATTCTGGCCACTTTCTGGGAAACCCTTCTTTGATATCATACTCACAAAATCACATGTGAAACCCATTTACCAAATGGGGATCCCAACCGAACTTGATCCAATACTACCGTCTGGTTCAATCCATACAGTTCTCGTATACGGGGATAAGAGTTGGGAGATGACCTATAATGGAGAAAAACGTCATAAACAATTCAATCGAAAGTCATGGGGAGCATTTGTTGATGAAAATAATTTGAAGGCCGGAGATGCATTGGTGTTTGAACTCATGGAGTGCAACAGCACACAAATAGGATTCAGAGTCCAAATCCTGAGAGGTGACATCCCTCAGGAACTTATAGAGAAGGCCAACCATGAGGCAGAGCAACCCGTTGTTATACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

143

Amino Acids

16.1

Weight (kDa)

5.31

Isoelectric Point (pI)

40.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 27 - 110 2.9e-10 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35581 FvH4_6g35581 FvH4_6g35582 FvH4_7g07710 FvH4_7g07720
malus_domestica MD02G1233300.v1.1 MD07G1080300.v1.1
prunus_persica Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G104300_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1
pyrus_communis pycom02g20150 pycom07g06390
rosa_chinensis RchiOBHm_Chr1g0342371 RchiOBHm_Chr1g0342381 RchiOBHm_Chr1g0342401 RchiOBHm_Chr1g0342491 RchiOBHm_Chr1g0342511 RchiOBHm_Chr2g0147401 RchiOBHm_Chr2g0147411
rosa_laevigata RLG00000020253 RLG00000020259 RLG00000029157 RLG00000029158
rosa_multiflora Rmu_sc0000979.1_g000010 Rmu_sc0001159.1_g000034 Rmu_sc0001159.1_g000035 Rmu_sc0005388.1_g000001 Rmu_sc0009535.1_g000001 Rmu_sc0009535.1_g000003 Rmu_sc0011976.1_g000004 Rmu_sc0011976.1_g000005 Rmu_sc0027133.1_g000002
rosa_roxburghii Rroxscaffold_2G00099550 Rroxscaffold_2G00099560 Rroxscaffold_4G00296180 Rroxscaffold_4G00312990 Rroxscaffold_4G00313010 Rroxscaffold_4G00313030 Rroxscaffold_4G00313060
rosa_rugosa Rorug01G0150600.1 Rorug01G0150700.1 Rorug01G0150800.1 Rorug01G0150900.1 Rorug01G0151000.1 Rorug01G0151100.1 Rorug01G0151200.1 Rorug01G0151300.1 Rorug01G0151400.1 Rorug02G0399500 Rorug02G0399600 Rorug02G0399700 Rorug02G0399800 Rorug02G0399800 Rorug02G0399900
rosa_samantha Rh1AG165800 Rh1AG165900 Rh1BG132300 Rh1BG132400 Rh1CG154400 Rh1CG154500 Rh1DG167200 Rh1DG167300 Rh2AG456600 Rh2AG456700 Rh2BG469100 Rh2CG444100 Rh2CG444200 Rh2DG478400 Rh2DG478500
rosa_wichuraiana Rw1G013810 Rw1G013820 Rw1G013860 Rw2G037370 Rw2G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 62
AccI GTMKAC 1 cut(s) 183
AclWI GGATC 3 cut(s) 121, 134, 137
AcoI YGGCCR 1 cut(s) 53
AcsI RAATTY 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 62
AflIII ACRYGT 1 cut(s) 100
AgsI TTSAA 6 cut(s) 32, 37, 165, 241, 283, 308
AlwI GGATC 3 cut(s) 121, 134, 137
AoxI GGCC 4 cut(s) 3, 53, 285, 390
ApoI RAATTY 1 cut(s) 47
Asp700I GAANNNNTTC 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 374
AxyI CCTNAGG 1 cut(s) 372
BalI TGGCCA 1 cut(s) 55
BamHI GGATCC 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 128
BmsI GCATC 1 cut(s) 283
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse21I CCTNAGG 1 cut(s) 372
BseGI GGATG 1 cut(s) 366
BseLI CCNNNNNNNGG 1 cut(s) 62
BseMII CTCAG 2 cut(s) 347, 386
BshFI GGCC 4 cut(s) 5, 55, 287, 392
BsiSI CCGG 1 cut(s) 288
BslI CCNNNNNNNGG 1 cut(s) 62
BsnI GGCC 4 cut(s) 5, 55, 287, 392
Bsp143I GATC 2 cut(s) 126, 142
BspANI GGCC 4 cut(s) 5, 55, 287, 392
BspCNI CTCAG 2 cut(s) 348, 385
BspLI GGNNCC 1 cut(s) 128
BspPI GGATC 3 cut(s) 121, 134, 137
BssMI GATC 2 cut(s) 126, 142
BssNAI GTATAC 1 cut(s) 184
Bst1107I GTATAC 1 cut(s) 184
Bst4CI ACNGT 2 cut(s) 156, 175
BstDEI CTNAG 2 cut(s) 356, 372
BstF5I GGATG 1 cut(s) 366
BstKTI GATC 2 cut(s) 129, 145
BstMBI GATC 2 cut(s) 126, 142
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstNSI RCATGY 1 cut(s) 104
BstSFI CTRYAG 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 126
BstYI RGATCY 1 cut(s) 126
BstZ17I GTATAC 1 cut(s) 184
Bsu36I CCTNAGG 1 cut(s) 372
BsuRI GGCC 4 cut(s) 5, 55, 287, 392
BtsCI GGATG 1 cut(s) 366
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 4 cut(s) 101, 252, 313, 398
CviJI RGCY 4 cut(s) 5, 55, 287, 392
CviKI_1 RGCY 4 cut(s) 5, 55, 287, 392
DdeI CTNAG 2 cut(s) 356, 372
DpnI GATC 2 cut(s) 128, 144
DpnII GATC 2 cut(s) 126, 142
EaeI YGGCCR 1 cut(s) 53
Eco32I GATATC 1 cut(s) 82
Eco81I CCTNAGG 1 cut(s) 372
EcoRI GAATTC 1 cut(s) 47
EcoRV GATATC 1 cut(s) 82
EcoT22I ATGCAT 1 cut(s) 298
FaeI CATG 4 cut(s) 104, 255, 316, 401
FatI CATG 4 cut(s) 100, 251, 312, 397
FblI GTMKAC 1 cut(s) 183
FokI GGATG 1 cut(s) 353
HaeIII GGCC 4 cut(s) 5, 55, 287, 392
HapII CCGG 1 cut(s) 288
Hin1II CATG 4 cut(s) 104, 255, 316, 401
HinfI GANTC 3 cut(s) 19, 339, 345
HpaII CCGG 1 cut(s) 288
HphI GGTGA 1 cut(s) 374
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 344
Hpy188III TCNNGA 2 cut(s) 355, 374
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 3 cut(s) 82, 277, 382
HpyCH4III ACNGT 2 cut(s) 156, 175
HpyCH4IV ACGT 1 cut(s) 226
HpyCH4V TGCA 2 cut(s) 296, 321
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 2 cut(s) 356, 372
HpySE526I ACGT 1 cut(s) 226
Hsp92II CATG 4 cut(s) 104, 255, 316, 401
Kzo9I GATC 2 cut(s) 126, 142
LmnI GCTCC 1 cut(s) 257
LpnPI CCDG 7 cut(s) 36, 37, 48, 144, 301, 359, 368
LweI GCATC 1 cut(s) 283
MaeII ACGT 1 cut(s) 226
MaeIII GTNAC 1 cut(s) 362
MalI GATC 2 cut(s) 128, 144
MboI GATC 2 cut(s) 126, 142
MflI RGATCY 1 cut(s) 126
MlsI TGGCCA 1 cut(s) 55
MluCI AATT 4 cut(s) 32, 47, 236, 277
MluNI TGGCCA 1 cut(s) 55
MlyI GAGTC 1 cut(s) 354
MnlI CCTC 5 cut(s) 22, 37, 353, 381, 394
Mox20I TGGCCA 1 cut(s) 55
Mph1103I ATGCAT 1 cut(s) 298
MroXI GAANNNNTTC 1 cut(s) 71
MscI TGGCCA 1 cut(s) 55
Msp20I TGGCCA 1 cut(s) 55
MspI CCGG 1 cut(s) 288
MwoI GCNNNNNNNGC 1 cut(s) 293
NdeII GATC 2 cut(s) 126, 142
NlaIII CATG 4 cut(s) 104, 255, 316, 401
NlaIV GGNNCC 1 cut(s) 128
NmuCI GTSAC 1 cut(s) 362
NsiI ATGCAT 1 cut(s) 298
NspI RCATGY 1 cut(s) 104
PciI ACATGT 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 2 cut(s) 19, 339
PflMI CCANNNNNTGG 1 cut(s) 62
PleI GAGTC 1 cut(s) 353
PpsI GAGTC 1 cut(s) 353
PscI ACATGT 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 128
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 126
Sau3AI GATC 2 cut(s) 126, 142
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 354
SetI ASST 3 cut(s) 212, 229, 364
SfaNI GCATC 1 cut(s) 283
SfcI CTRYAG 1 cut(s) 24
Sse9I AATT 4 cut(s) 32, 47, 236, 277
TaaI ACNGT 2 cut(s) 156, 175
TaiI ACGT 1 cut(s) 229
TaqI TCGA 2 cut(s) 17, 244
TasI AATT 4 cut(s) 32, 47, 236, 277
TfiI GAWTC 2 cut(s) 19, 339
TseFI GTSAC 1 cut(s) 362
Tsp45I GTSAC 1 cut(s) 362
TspDTI ATGAA 1 cut(s) 285
Van91I CCANNNNNTGG 1 cut(s) 62
XapI RAATTY 1 cut(s) 47
XceI RCATGY 1 cut(s) 104
XcmI CCANNNNNNNNNTGG 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 183
XmnI GAANNNNTTC 1 cut(s) 71
Zsp2I ATGCAT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.