FvH4_7g07710

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000623
Physical Location & Seq
Forward (+)
7578453 .. 7582024
3572 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g07710.t1

Sequence Viewer

Length: 846 bp
ATGGAAGACACGGCGCAATCCTCAGCAACTCCTATGATTGAATTGCATGGCGATGAATTTTGGCCACTTTCAGGGAGACCTTACTTTGATATCATACTCACAAAATCCCATGTCAAGCCCATTTACCAAATGGAGATCCCAACCACACTTGATCCAAACTTACCTGCGGGTACTTCAGTCCCTATGCCTAAAGGCTGGAGATGGATGTATTTTCGAACTCATGGGGAGTGTGACAGTACAAAAGTATTGTTCAAGGTCCAAATCCTCAGAGGTGACATCCCAGCTGAGCTAATAGAGAAGTACTCTGCCTTTTACCACCTATCTCTTTTCACAGCATACTTGAGAACTCTTGGGGGCAAATCTCAGTTTCTCACCAGAGATCATATTCAAAGAAAGGCAAAAAGAGGAGACAATAACAATCAACTAGCCAATCCAGCTGACATTGAAAGCAGATGTCATAAATATGGAAAGCGAGTGAGGGAATGGACTCCTCTAGCTCATTATCCCATTCTATCCCTGTTCTCTGGAGCGTTAGTTGGCCCGTCTAGTAAGGGGTATTCTCAGGAGTCTTGGATTATGAGGAGACGTTTGCACCACCTCCACCGGGTCTATCTACTCCGTCATCTATGGGTTTCCGGCCCTTTATTCAATGAGTCGGCGCTTTATGGTCTCAAACGGGCTCCTCTCGCTTTTCTCGCTTCCATTCCTCTCCTTTCAGTCAGAGTCAGCCAGGTGCCTAAGGAGAAAGTCCGTCTCCTTTCTCCAACAGAATCAATGGTAATGGCATCGGATCTAACTCTCCGTTTCCGACTATTACTAAGAGAATTTCCTAACCAGACTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

282

Amino Acids

32.29

Weight (kDa)

9.81

Isoelectric Point (pI)

54.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35581 FvH4_6g35581 FvH4_6g35582 FvH4_7g07710 FvH4_7g07720
malus_domestica MD02G1233300.v1.1 MD07G1080300.v1.1
prunus_persica Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G104300_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1
pyrus_communis pycom02g20150 pycom07g06390
rosa_chinensis RchiOBHm_Chr1g0342371 RchiOBHm_Chr1g0342381 RchiOBHm_Chr1g0342401 RchiOBHm_Chr1g0342491 RchiOBHm_Chr1g0342511 RchiOBHm_Chr2g0147401 RchiOBHm_Chr2g0147411
rosa_laevigata RLG00000020253 RLG00000020259 RLG00000029157 RLG00000029158
rosa_multiflora Rmu_sc0000979.1_g000010 Rmu_sc0001159.1_g000034 Rmu_sc0001159.1_g000035 Rmu_sc0005388.1_g000001 Rmu_sc0009535.1_g000001 Rmu_sc0009535.1_g000003 Rmu_sc0011976.1_g000004 Rmu_sc0011976.1_g000005 Rmu_sc0027133.1_g000002
rosa_roxburghii Rroxscaffold_2G00099550 Rroxscaffold_2G00099560 Rroxscaffold_4G00296180 Rroxscaffold_4G00312990 Rroxscaffold_4G00313010 Rroxscaffold_4G00313030 Rroxscaffold_4G00313060
rosa_rugosa Rorug01G0150600.1 Rorug01G0150700.1 Rorug01G0150800.1 Rorug01G0150900.1 Rorug01G0151000.1 Rorug01G0151100.1 Rorug01G0151200.1 Rorug01G0151300.1 Rorug01G0151400.1 Rorug02G0399500 Rorug02G0399600 Rorug02G0399700 Rorug02G0399800 Rorug02G0399800 Rorug02G0399900
rosa_samantha Rh1AG165800 Rh1AG165900 Rh1BG132300 Rh1BG132400 Rh1CG154400 Rh1CG154500 Rh1DG167200 Rh1DG167300 Rh2AG456600 Rh2AG456700 Rh2BG469100 Rh2CG444100 Rh2CG444200 Rh2DG478400 Rh2DG478500
rosa_wichuraiana Rw1G013810 Rw1G013820 Rw1G013860 Rw2G037370 Rw2G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 172
AccB1I GGYRCC 1 cut(s) 733
AciI CCGC 1 cut(s) 167
AclWI GGATC 3 cut(s) 130, 146, 798
AcoI YGGCCR 1 cut(s) 62
AcsI RAATTY 2 cut(s) 56, 824
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 3 cut(s) 172, 238, 302
AfiI CCNNNNNNNGG 2 cut(s) 71, 604
AgsI TTSAA 5 cut(s) 41, 253, 389, 446, 649
AjnI CCWGG 1 cut(s) 729
AluBI AGCT 4 cut(s) 284, 289, 437, 497
AluI AGCT 4 cut(s) 284, 289, 437, 497
Alw26I GTCTC 5 cut(s) 70, 402, 577, 674, 758
AlwI GGATC 3 cut(s) 130, 146, 798
AoxI GGCC 3 cut(s) 62, 538, 637
ApoI RAATTY 2 cut(s) 56, 824
AspLEI GCGC 2 cut(s) 16, 661
AspS9I GGNCC 3 cut(s) 256, 539, 638
AsuC2I CCSGG 1 cut(s) 605
AsuHPI GGTGA 2 cut(s) 284, 364
AsuII TTCGAA 1 cut(s) 214
AvaII GGWCC 1 cut(s) 256
AxyI CCTNAGG 1 cut(s) 738
BaeI ACNNNNGTAYC 2 cut(s) 162, 195
BalI TGGCCA 1 cut(s) 64
BanI GGYRCC 1 cut(s) 733
BanII GRGCYC 1 cut(s) 682
BbsI GAAGAC 1 cut(s) 12
BbvCI CCTCAGC 1 cut(s) 22
BccI CCATC 1 cut(s) 195
BceAI ACGGC 1 cut(s) 27
BciT130I CCWGG 1 cut(s) 731
BcnI CCSGG 1 cut(s) 605
BcoDI GTCTC 5 cut(s) 70, 402, 577, 674, 758
BfaI CTAG 3 cut(s) 425, 494, 546
BfoI RGCGCY 1 cut(s) 662
BfuAI ACCTGC 1 cut(s) 172
BlpI GCTNAGC 1 cut(s) 285
BmcAI AGTACT 1 cut(s) 302
Bme1390I CCNGG 2 cut(s) 605, 731
Bme18I GGWCC 1 cut(s) 256
BmgT120I GGNCC 3 cut(s) 256, 539, 638
BmiI GGNNCC 2 cut(s) 681, 735
BmrFI CCNGG 2 cut(s) 605, 731
BmsI GCATC 1 cut(s) 794
BpiI GAAGAC 1 cut(s) 12
BplI GAGNNNNNCTC 2 cut(s) 287, 319
BpmI CTGGAG 2 cut(s) 217, 546
Bpu10I CCTNAGC 1 cut(s) 22
Bpu1102I GCTNAGC 1 cut(s) 285
Bpu14I TTCGAA 1 cut(s) 214
BpuEI CTTGAG 1 cut(s) 361
BpuMI CCSGG 1 cut(s) 605
BsaI GGTCTC 2 cut(s) 70, 674
BsaXI ACNNNNNCTCC 2 cut(s) 519, 549
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 604
Bse21I CCTNAGG 1 cut(s) 738
BseBI CCWGG 1 cut(s) 731
BseGI GGATG 2 cut(s) 210, 276
BseLI CCNNNNNNNGG 2 cut(s) 71, 604
BseMII CTCAG 5 cut(s) 36, 276, 280, 377, 575
BseRI GAGGAG 4 cut(s) 420, 480, 595, 672
BseYI CCCAGC 1 cut(s) 280
BshFI GGCC 3 cut(s) 64, 540, 639
BshNI GGYRCC 1 cut(s) 733
BsiSI CCGG 2 cut(s) 604, 636
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 2 cut(s) 71, 604
BsmAI GTCTC 5 cut(s) 70, 402, 577, 674, 758
BsmBI CGTCTC 2 cut(s) 577, 758
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 3 cut(s) 64, 540, 639
Bso31I GGTCTC 2 cut(s) 70, 674
Bsp119I TTCGAA 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 682
Bsp143I GATC 4 cut(s) 135, 151, 379, 790
Bsp1720I GCTNAGC 1 cut(s) 285
BspACI CCGC 1 cut(s) 167
BspANI GGCC 3 cut(s) 64, 540, 639
BspCNI CTCAG 5 cut(s) 35, 277, 279, 376, 574
BspLI GGNNCC 2 cut(s) 681, 735
BspMI ACCTGC 1 cut(s) 172
BspPI GGATC 3 cut(s) 130, 146, 798
BspT104I TTCGAA 1 cut(s) 214
BspT107I GGYRCC 1 cut(s) 733
BspTNI GGTCTC 2 cut(s) 70, 674
BssMI GATC 4 cut(s) 135, 151, 379, 790
Bst2UI CCWGG 1 cut(s) 731
Bst4CI ACNGT 1 cut(s) 236
BstBI TTCGAA 1 cut(s) 214
BstDEI CTNAG 7 cut(s) 22, 266, 285, 363, 561, 738, 818
BstF5I GGATG 2 cut(s) 210, 276
BstH2I RGCGCY 1 cut(s) 662
BstHHI GCGC 2 cut(s) 16, 661
BstKTI GATC 4 cut(s) 138, 154, 382, 793
BstMAI GTCTC 5 cut(s) 70, 402, 577, 674, 758
BstMBI GATC 4 cut(s) 135, 151, 379, 790
BstMWI GCNNNNNNNGC 3 cut(s) 434, 686, 695
BstNI CCWGG 1 cut(s) 731
BstSCI CCNGG 2 cut(s) 603, 729
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 2 cut(s) 135, 790
BstYI RGATCY 2 cut(s) 135, 790
Bsu36I CCTNAGG 1 cut(s) 738
BsuRI GGCC 3 cut(s) 64, 540, 639
BtgZI GCGATG 1 cut(s) 66
BtsCI GGATG 2 cut(s) 210, 276
BveI ACCTGC 1 cut(s) 172
CfoI GCGC 2 cut(s) 16, 661
Cfr13I GGNCC 3 cut(s) 256, 539, 638
Csp6I GTAC 3 cut(s) 171, 237, 301
CviAII CATG 3 cut(s) 47, 110, 221
CviQI GTAC 3 cut(s) 171, 237, 301
DdeI CTNAG 7 cut(s) 22, 266, 285, 363, 561, 738, 818
DpnI GATC 4 cut(s) 137, 153, 381, 792
DpnII GATC 4 cut(s) 135, 151, 379, 790
EaeI YGGCCR 1 cut(s) 62
Eco24I GRGCYC 1 cut(s) 682
Eco31I GGTCTC 2 cut(s) 70, 674
Eco32I GATATC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 159
Eco81I CCTNAGG 1 cut(s) 738
EcoRII CCWGG 1 cut(s) 729
EcoRV GATATC 1 cut(s) 91
EcoT38I GRGCYC 1 cut(s) 682
Esp3I CGTCTC 2 cut(s) 577, 758
FaeI CATG 3 cut(s) 50, 113, 224
FaqI GGGAC 1 cut(s) 164
FatI CATG 3 cut(s) 46, 109, 220
FauI CCCGC 1 cut(s) 160
FokI GGATG 2 cut(s) 217, 263
FriOI GRGCYC 1 cut(s) 682
FspBI CTAG 3 cut(s) 425, 494, 546
GlaI GCGC 2 cut(s) 15, 660
GsaI CCCAGC 1 cut(s) 284
GsuI CTGGAG 2 cut(s) 217, 546
HaeII RGCGCY 1 cut(s) 662
HaeIII GGCC 3 cut(s) 64, 540, 639
HapII CCGG 2 cut(s) 604, 636
HhaI GCGC 2 cut(s) 16, 661
Hin1II CATG 3 cut(s) 50, 113, 224
Hin6I GCGC 2 cut(s) 14, 659
HinP1I GCGC 2 cut(s) 14, 659
HinfI GANTC 5 cut(s) 487, 566, 653, 723, 770
HpaII CCGG 2 cut(s) 604, 636
HphI GGTGA 2 cut(s) 284, 364
Hpy188I TCNGA 4 cut(s) 269, 722, 790, 809
Hpy188III TCNNGA 2 cut(s) 525, 563
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4IV ACGT 1 cut(s) 586
HpyCH4V TGCA 3 cut(s) 46, 592, 842
HpyF10VI GCNNNNNNNGC 3 cut(s) 434, 686, 695
HpyF3I CTNAG 7 cut(s) 22, 266, 285, 363, 561, 738, 818
HpySE526I ACGT 1 cut(s) 586
Hsp92II CATG 3 cut(s) 50, 113, 224
HspAI GCGC 2 cut(s) 14, 659
Kzo9I GATC 4 cut(s) 135, 151, 379, 790
LmnI GCTCC 2 cut(s) 527, 685
LweI GCATC 1 cut(s) 794
MaeI CTAG 3 cut(s) 425, 494, 546
MaeII ACGT 1 cut(s) 586
MaeIII GTNAC 2 cut(s) 230, 272
MalI GATC 4 cut(s) 137, 153, 381, 792
MboI GATC 4 cut(s) 135, 151, 379, 790
MboII GAAGA 1 cut(s) 17
MflI RGATCY 2 cut(s) 135, 790
MhlI GDGCHC 1 cut(s) 682
MlsI TGGCCA 1 cut(s) 64
MluCI AATT 3 cut(s) 41, 56, 824
MluNI TGGCCA 1 cut(s) 64
MlyI GAGTC 4 cut(s) 481, 575, 662, 732
MmeI TCCRAC 2 cut(s) 788, 832
Mox20I TGGCCA 1 cut(s) 64
MscI TGGCCA 1 cut(s) 64
MslI CAYNNNNRTG 2 cut(s) 51, 462
Msp20I TGGCCA 1 cut(s) 64
MspA1I CMGCKG 2 cut(s) 284, 437
MspI CCGG 2 cut(s) 604, 636
MspR9I CCNGG 2 cut(s) 605, 731
MvaI CCWGG 1 cut(s) 731
MwoI GCNNNNNNNGC 3 cut(s) 434, 686, 695
NciI CCSGG 1 cut(s) 605
NdeII GATC 4 cut(s) 135, 151, 379, 790
NlaIII CATG 3 cut(s) 50, 113, 224
NlaIV GGNNCC 2 cut(s) 681, 735
NmuCI GTSAC 2 cut(s) 230, 272
NspV TTCGAA 1 cut(s) 214
PfeI GAWTC 1 cut(s) 770
PleI GAGTC 4 cut(s) 481, 574, 661, 731
PpsI GAGTC 4 cut(s) 481, 574, 661, 731
Psp6I CCWGG 1 cut(s) 729
PspFI CCCAGC 1 cut(s) 280
PspGI CCWGG 1 cut(s) 729
PspN4I GGNNCC 2 cut(s) 681, 735
PspPI GGNCC 3 cut(s) 256, 539, 638
PsuI RGATCY 2 cut(s) 135, 790
PvuII CAGCTG 2 cut(s) 284, 437
RsaI GTAC 3 cut(s) 172, 238, 302
RsaNI GTAC 3 cut(s) 171, 237, 301
RseI CAYNNNNRTG 2 cut(s) 51, 462
Sau3AI GATC 4 cut(s) 135, 151, 379, 790
Sau96I GGNCC 3 cut(s) 256, 539, 638
ScaI AGTACT 1 cut(s) 302
SchI GAGTC 4 cut(s) 481, 575, 662, 732
ScrFI CCNGG 2 cut(s) 605, 731
SduI GDGCHC 1 cut(s) 682
SfaNI GCATC 1 cut(s) 794
SfuI TTCGAA 1 cut(s) 214
SinI GGWCC 1 cut(s) 256
SmiMI CAYNNNNRTG 2 cut(s) 51, 462
SmlI CTYRAG 1 cut(s) 340
SmoI CTYRAG 1 cut(s) 340
Sse9I AATT 3 cut(s) 41, 56, 824
SsiI CCGC 1 cut(s) 167
SspMI CTAG 3 cut(s) 425, 494, 546
StyD4I CCNGG 2 cut(s) 603, 729
TaaI ACNGT 1 cut(s) 236
TaiI ACGT 1 cut(s) 589
TaqI TCGA 1 cut(s) 214
TasI AATT 3 cut(s) 41, 56, 824
TatI WGTACW 2 cut(s) 236, 300
TfiI GAWTC 1 cut(s) 770
TseFI GTSAC 2 cut(s) 230, 272
Tsp45I GTSAC 2 cut(s) 230, 272
TspDTI ATGAA 1 cut(s) 69
TspGWI ACGGA 3 cut(s) 608, 740, 791
VpaK11BI GGWCC 1 cut(s) 256
XapI RAATTY 2 cut(s) 56, 824
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XspI CTAG 3 cut(s) 425, 494, 546
ZrmI AGTACT 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.