pycom07g06390

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000623
Physical Location & Seq
Forward (+)
5656350 .. 5657702
1353 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g06390.3

Sequence Viewer

Length: 438 bp
ATGAATGCTCCTCAATTACTGGCTTCTGATGGCAATCCATGGTTGTTCTCCGATGGACTAATGCCTCCGCATTTTTTCGATATGGTTAGGGATGTGGATTTGGTTGAGAAGATCCTCAAATGGGAGACCAACGTCACCAACCCCACATCAATCCCACGATTGAATTGCAAGGGGATGAGTTTTGGCCACACTCCTTTTTTGAAGTCATTATCACCAAAAGCAAATGTCAAGCCCTCTTATCAAATGGTGATCCCGGCCAAATTTCAACCAACACTACCTTCCTGTTCAATTCCTACGGTTCTCACGTTTGGGGACAAAAACTGGGAGATGACATATACTGGTGGATCCATTCAGAGAAAGTTCGATATTAACTGGAGACAATTTGTCAACGACAACAATTTGAAGGTTGGAGATGCATGTGTATTTGAACTTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

146

Amino Acids

16.4

Weight (kDa)

7.71

Isoelectric Point (pI)

26.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35581 FvH4_6g35581 FvH4_6g35582 FvH4_7g07710 FvH4_7g07720
malus_domestica MD02G1233300.v1.1 MD07G1080300.v1.1
prunus_persica Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G104300_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1
pyrus_communis pycom02g20150 pycom07g06390
rosa_chinensis RchiOBHm_Chr1g0342371 RchiOBHm_Chr1g0342381 RchiOBHm_Chr1g0342401 RchiOBHm_Chr1g0342491 RchiOBHm_Chr1g0342511 RchiOBHm_Chr2g0147401 RchiOBHm_Chr2g0147411
rosa_laevigata RLG00000020253 RLG00000020259 RLG00000029157 RLG00000029158
rosa_multiflora Rmu_sc0000979.1_g000010 Rmu_sc0001159.1_g000034 Rmu_sc0001159.1_g000035 Rmu_sc0005388.1_g000001 Rmu_sc0009535.1_g000001 Rmu_sc0009535.1_g000003 Rmu_sc0011976.1_g000004 Rmu_sc0011976.1_g000005 Rmu_sc0027133.1_g000002
rosa_roxburghii Rroxscaffold_2G00099550 Rroxscaffold_2G00099560 Rroxscaffold_4G00296180 Rroxscaffold_4G00312990 Rroxscaffold_4G00313010 Rroxscaffold_4G00313030 Rroxscaffold_4G00313060
rosa_rugosa Rorug01G0150600.1 Rorug01G0150700.1 Rorug01G0150800.1 Rorug01G0150900.1 Rorug01G0151000.1 Rorug01G0151100.1 Rorug01G0151200.1 Rorug01G0151300.1 Rorug01G0151400.1 Rorug02G0399500 Rorug02G0399600 Rorug02G0399700 Rorug02G0399800 Rorug02G0399800 Rorug02G0399900
rosa_samantha Rh1AG165800 Rh1AG165900 Rh1BG132300 Rh1BG132400 Rh1CG154400 Rh1CG154500 Rh1DG167200 Rh1DG167300 Rh2AG456600 Rh2AG456700 Rh2BG469100 Rh2CG444100 Rh2CG444200 Rh2DG478400 Rh2DG478500
rosa_wichuraiana Rw1G013810 Rw1G013820 Rw1G013860 Rw2G037370 Rw2G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 68
AclWI GGATC 4 cut(s) 106, 244, 339, 352
AcoI YGGCCR 2 cut(s) 184, 255
AcsI RAATTY 1 cut(s) 260
AfiI CCNNNNNNNGG 1 cut(s) 121
AgsI TTSAA 6 cut(s) 163, 202, 266, 288, 403, 428
AhdI GACNNNNNGTC 1 cut(s) 383
AjuI GAANNNNNNNTTGG 2 cut(s) 262, 294
Alw26I GTCTC 2 cut(s) 119, 370
AlwI GGATC 4 cut(s) 106, 244, 339, 352
AoxI GGCC 2 cut(s) 184, 255
ApoI RAATTY 1 cut(s) 260
AsuC2I CCSGG 1 cut(s) 254
AsuHPI GGTGA 3 cut(s) 127, 204, 259
BalI TGGCCA 1 cut(s) 186
BamHI GGATCC 1 cut(s) 344
BarI GAAGNNNNNNTAC 1 cut(s) 414
BccI CCATC 2 cut(s) 23, 47
BcgI CGANNNNNNTGC 2 cut(s) 147, 181
BcnI CCSGG 1 cut(s) 254
BcoDI GTCTC 2 cut(s) 119, 370
BfmI CTRYAG 1 cut(s) 434
Bme1390I CCNGG 1 cut(s) 254
BmeRI GACNNNNNGTC 1 cut(s) 383
BmiI GGNNCC 1 cut(s) 346
BmrFI CCNGG 1 cut(s) 254
BmrI ACTGGG 1 cut(s) 331
BmsI GCATC 1 cut(s) 403
BmuI ACTGGG 1 cut(s) 331
BoxI GACNNNNGTC 1 cut(s) 131
BpmI CTGGAG 1 cut(s) 394
BpuMI CCSGG 1 cut(s) 254
BsaBI GATNNNNATC 1 cut(s) 33
BsaI GGTCTC 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 38
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse1I ACTGG 4 cut(s) 24, 326, 343, 377
Bse8I GATNNNNATC 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 2 cut(s) 97, 180
BseJI GATNNNNATC 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 121
BseNI ACTGG 4 cut(s) 24, 326, 343, 377
BshFI GGCC 2 cut(s) 186, 257
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 2 cut(s) 119, 370
BsmFI GGGAC 1 cut(s) 326
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 2 cut(s) 186, 257
Bso31I GGTCTC 1 cut(s) 119
Bsp143I GATC 3 cut(s) 111, 249, 344
Bsp19I CCATGG 1 cut(s) 38
BspACI CCGC 1 cut(s) 68
BspANI GGCC 2 cut(s) 186, 257
BspLI GGNNCC 1 cut(s) 346
BspPI GGATC 4 cut(s) 106, 244, 339, 352
BspTNI GGTCTC 1 cut(s) 119
BsrI ACTGG 4 cut(s) 24, 326, 343, 377
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 3 cut(s) 111, 249, 344
BssT1I CCWWGG 1 cut(s) 38
Bst4CI ACNGT 1 cut(s) 298
BstDSI CCRYGG 1 cut(s) 38
BstF5I GGATG 2 cut(s) 97, 180
BstKTI GATC 3 cut(s) 114, 252, 347
BstMAI GTCTC 2 cut(s) 119, 370
BstMBI GATC 3 cut(s) 111, 249, 344
BstNSI RCATGY 1 cut(s) 420
BstPAI GACNNNNGTC 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 252
BstSFI CTRYAG 1 cut(s) 434
BstX2I RGATCY 2 cut(s) 111, 344
BstYI RGATCY 2 cut(s) 111, 344
BsuRI GGCC 2 cut(s) 186, 257
BtgI CCRYGG 1 cut(s) 38
BtsCI GGATG 2 cut(s) 97, 180
CviAII CATG 2 cut(s) 39, 417
CviJI RGCY 4 cut(s) 23, 186, 232, 257
CviKI_1 RGCY 4 cut(s) 23, 186, 232, 257
DpnI GATC 3 cut(s) 113, 251, 346
DpnII GATC 3 cut(s) 111, 249, 344
DriI GACNNNNNGTC 1 cut(s) 383
EaeI YGGCCR 2 cut(s) 184, 255
Eam1105I GACNNNNNGTC 1 cut(s) 383
Eco130I CCWWGG 1 cut(s) 38
Eco31I GGTCTC 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 38
EcoT22I ATGCAT 1 cut(s) 418
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 2 cut(s) 42, 420
FaiI YATR 5 cut(s) 40, 83, 334, 336, 418
FaqI GGGAC 1 cut(s) 326
FatI CATG 2 cut(s) 38, 416
FokI GGATG 2 cut(s) 104, 187
GsuI CTGGAG 1 cut(s) 394
HaeIII GGCC 2 cut(s) 186, 257
HapII CCGG 1 cut(s) 254
Hin1II CATG 2 cut(s) 42, 420
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HpaII CCGG 1 cut(s) 254
HphI GGTGA 3 cut(s) 127, 204, 259
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 3 cut(s) 28, 52, 354
Hpy8I GTNNAC 1 cut(s) 388
HpyAV CCTTC 2 cut(s) 288, 397
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4IV ACGT 2 cut(s) 132, 305
HpyCH4V TGCA 2 cut(s) 168, 416
HpySE526I ACGT 2 cut(s) 132, 305
Hsp92II CATG 2 cut(s) 42, 420
Kzo9I GATC 3 cut(s) 111, 249, 344
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 6 cut(s) 5, 267, 295, 307, 324, 358
LweI GCATC 1 cut(s) 403
MaeII ACGT 2 cut(s) 132, 305
MaeIII GTNAC 1 cut(s) 133
MalI GATC 3 cut(s) 113, 251, 346
MboI GATC 3 cut(s) 111, 249, 344
MboII GAAGA 1 cut(s) 121
MflI RGATCY 2 cut(s) 111, 344
MlsI TGGCCA 1 cut(s) 186
MluCI AATT 6 cut(s) 14, 163, 260, 288, 380, 397
MluNI TGGCCA 1 cut(s) 186
MmeI TCCRAC 1 cut(s) 388
MnlI CCTC 4 cut(s) 21, 75, 125, 244
Mox20I TGGCCA 1 cut(s) 186
Mph1103I ATGCAT 1 cut(s) 418
MscI TGGCCA 1 cut(s) 186
MseI TTAA 1 cut(s) 369
Msp20I TGGCCA 1 cut(s) 186
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 254
Mva1269I GAATGC 1 cut(s) 10
NciI CCSGG 1 cut(s) 254
NcoI CCATGG 1 cut(s) 38
NdeII GATC 3 cut(s) 111, 249, 344
NlaIII CATG 2 cut(s) 42, 420
NlaIV GGNNCC 1 cut(s) 346
NmuCI GTSAC 1 cut(s) 133
NsiI ATGCAT 1 cut(s) 418
NspI RCATGY 1 cut(s) 420
PcsI WCGNNNNNNNCGW 1 cut(s) 302
PctI GAATGC 1 cut(s) 10
PshAI GACNNNNGTC 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 346
PsuI RGATCY 2 cut(s) 111, 344
SaqAI TTAA 1 cut(s) 369
Sau3AI GATC 3 cut(s) 111, 249, 344
ScrFI CCNGG 1 cut(s) 254
SetI ASST 4 cut(s) 135, 280, 308, 408
SfaNI GCATC 1 cut(s) 403
SfcI CTRYAG 1 cut(s) 434
Sse9I AATT 6 cut(s) 14, 163, 260, 288, 380, 397
SsiI CCGC 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 252
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 1 cut(s) 298
TaiI ACGT 2 cut(s) 135, 308
TaqI TCGA 2 cut(s) 78, 363
TasI AATT 6 cut(s) 14, 163, 260, 288, 380, 397
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TseFI GTSAC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 260
XceI RCATGY 1 cut(s) 420
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.