Rmu_sc0000979.1_g000010

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000979.1
OG0000623
Physical Location & Seq
Reverse (-)
66650 .. 67311
662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000979.1_g000010.1.cds

Sequence Viewer

Length: 438 bp
atggaagactcggcacaatctagagcaactcccacgattgaattgcatggtgatgaattctggccactttcagggaaacctttctttgatatcatactcacaaaatcccatgtcaaacccctttaccaaatggagatcccagccaaacttgatccagtattacctgctggtgcttcagtccccatggttctcaactttggggacaagagctgggagatgacatataatgaaacaaaacgtctcaaattaatggatagacactcgtggagagcattcgtcgatgacaacagtctgaaggctggagatggatgtattttcgaactgactggatgtgacagtacaaaagtagtatttaaggtccaaatccttagaggagacatcccagctgagctagtagagaagtactccggtgaggtagagaaacccattattatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

145

Amino Acids

16.33

Weight (kDa)

5.19

Isoelectric Point (pI)

27.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35581 FvH4_6g35581 FvH4_6g35582 FvH4_7g07710 FvH4_7g07720
malus_domestica MD02G1233300.v1.1 MD07G1080300.v1.1
prunus_persica Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G104300_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1
pyrus_communis pycom02g20150 pycom07g06390
rosa_chinensis RchiOBHm_Chr1g0342371 RchiOBHm_Chr1g0342381 RchiOBHm_Chr1g0342401 RchiOBHm_Chr1g0342491 RchiOBHm_Chr1g0342511 RchiOBHm_Chr2g0147401 RchiOBHm_Chr2g0147411
rosa_laevigata RLG00000020253 RLG00000020259 RLG00000029157 RLG00000029158
rosa_multiflora Rmu_sc0000979.1_g000010 Rmu_sc0001159.1_g000034 Rmu_sc0001159.1_g000035 Rmu_sc0005388.1_g000001 Rmu_sc0009535.1_g000001 Rmu_sc0009535.1_g000003 Rmu_sc0011976.1_g000004 Rmu_sc0011976.1_g000005 Rmu_sc0027133.1_g000002
rosa_roxburghii Rroxscaffold_2G00099550 Rroxscaffold_2G00099560 Rroxscaffold_4G00296180 Rroxscaffold_4G00312990 Rroxscaffold_4G00313010 Rroxscaffold_4G00313030 Rroxscaffold_4G00313060
rosa_rugosa Rorug01G0150600.1 Rorug01G0150700.1 Rorug01G0150800.1 Rorug01G0150900.1 Rorug01G0151000.1 Rorug01G0151100.1 Rorug01G0151200.1 Rorug01G0151300.1 Rorug01G0151400.1 Rorug02G0399500 Rorug02G0399600 Rorug02G0399700 Rorug02G0399800 Rorug02G0399800 Rorug02G0399900
rosa_samantha Rh1AG165800 Rh1AG165900 Rh1BG132300 Rh1BG132400 Rh1CG154400 Rh1CG154500 Rh1DG167200 Rh1DG167300 Rh2AG456600 Rh2AG456700 Rh2BG469100 Rh2CG444100 Rh2CG444200 Rh2DG478400 Rh2DG478500
rosa_wichuraiana Rw1G013810 Rw1G013820 Rw1G013860 Rw2G037370 Rw2G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 172
AclWI GGATC 2 cut(s) 130, 146
AcoI YGGCCR 1 cut(s) 62
AcsI RAATTY 1 cut(s) 56
AcuI CTGAAG 2 cut(s) 159, 314
AfaI GTAC 2 cut(s) 340, 404
AfiI CCNNNNNNNGG 1 cut(s) 71
AgsI TTSAA 1 cut(s) 41
AluBI AGCT 3 cut(s) 210, 386, 391
AluI AGCT 3 cut(s) 210, 386, 391
Alw26I GTCTC 2 cut(s) 245, 369
AlwI GGATC 2 cut(s) 130, 146
AoxI GGCC 1 cut(s) 62
ApoI RAATTY 1 cut(s) 56
AseI ATTAAT 1 cut(s) 248
Asp700I GAANNNNTTC 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 358
AsuHPI GGTGA 2 cut(s) 62, 422
AsuII TTCGAA 1 cut(s) 318
AvaII GGWCC 1 cut(s) 358
BalI TGGCCA 1 cut(s) 64
BauI CACGAG 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 12
BccI CCATC 1 cut(s) 299
BcgI CGANNNNNNTGC 2 cut(s) 25, 59
BcoDI GTCTC 2 cut(s) 245, 369
BfaI CTAG 2 cut(s) 21, 392
BfuAI ACCTGC 1 cut(s) 172
BlpI GCTNAGC 1 cut(s) 387
BmcAI AGTACT 1 cut(s) 404
Bme18I GGWCC 1 cut(s) 358
BmgT120I GGNCC 1 cut(s) 358
BoxI GACNNNNGTC 1 cut(s) 288
BpiI GAAGAC 1 cut(s) 12
BplI GAGNNNNNCTC 2 cut(s) 389, 421
BpmI CTGGAG 1 cut(s) 321
Bpu1102I GCTNAGC 1 cut(s) 387
Bpu14I TTCGAA 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 183
BsaWI WCCGGW 1 cut(s) 407
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse1I ACTGG 2 cut(s) 155, 331
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 3 cut(s) 314, 335, 378
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMII CTCAG 1 cut(s) 378
BseNI ACTGG 2 cut(s) 155, 331
BseRI GAGGAG 1 cut(s) 387
BseYI CCCAGC 3 cut(s) 139, 210, 382
BshFI GGCC 1 cut(s) 64
BsiSI CCGG 1 cut(s) 408
BslFI GGGAC 2 cut(s) 164, 215
BslI CCNNNNNNNGG 1 cut(s) 71
BsmAI GTCTC 2 cut(s) 245, 369
BsmBI CGTCTC 1 cut(s) 245
BsmFI GGGAC 2 cut(s) 164, 215
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 1 cut(s) 64
Bsp119I TTCGAA 1 cut(s) 318
Bsp143I GATC 2 cut(s) 135, 151
Bsp1720I GCTNAGC 1 cut(s) 387
Bsp19I CCATGG 1 cut(s) 183
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 1 cut(s) 379
BspMI ACCTGC 1 cut(s) 172
BspPI GGATC 2 cut(s) 130, 146
BspT104I TTCGAA 1 cut(s) 318
BsrI ACTGG 2 cut(s) 155, 331
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 2 cut(s) 135, 151
BssSI CACGAG 1 cut(s) 262
BssT1I CCWWGG 1 cut(s) 183
Bst2BI CACGAG 1 cut(s) 262
Bst4CI ACNGT 2 cut(s) 290, 338
BstBI TTCGAA 1 cut(s) 318
BstDEI CTNAG 2 cut(s) 368, 387
BstDSI CCRYGG 1 cut(s) 183
BstF5I GGATG 3 cut(s) 314, 335, 378
BstKTI GATC 2 cut(s) 138, 154
BstMAI GTCTC 2 cut(s) 245, 369
BstMBI GATC 2 cut(s) 135, 151
BstPAI GACNNNNGTC 1 cut(s) 288
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 135
BstYI RGATCY 1 cut(s) 135
BsuRI GGCC 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 183
BtsCI GGATG 3 cut(s) 314, 335, 378
BveI ACCTGC 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 358
Csp6I GTAC 2 cut(s) 339, 403
CviAII CATG 3 cut(s) 47, 110, 184
CviJI RGCY 6 cut(s) 64, 143, 210, 299, 386, 391
CviKI_1 RGCY 6 cut(s) 64, 143, 210, 299, 386, 391
CviQI GTAC 2 cut(s) 339, 403
DdeI CTNAG 2 cut(s) 368, 387
DpnI GATC 2 cut(s) 137, 153
DpnII GATC 2 cut(s) 135, 151
EaeI YGGCCR 1 cut(s) 62
Eco130I CCWWGG 1 cut(s) 183
Eco32I GATATC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 358
Eco57I CTGAAG 2 cut(s) 159, 314
EcoRI GAATTC 1 cut(s) 56
EcoRV GATATC 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
Esp3I CGTCTC 1 cut(s) 245
FaeI CATG 3 cut(s) 50, 113, 187
FaiI YATR 8 cut(s) 48, 95, 111, 185, 223, 225, 434, 436
FaqI GGGAC 2 cut(s) 164, 215
FatI CATG 3 cut(s) 46, 109, 183
FokI GGATG 3 cut(s) 321, 342, 365
FspBI CTAG 2 cut(s) 21, 392
GsaI CCCAGC 3 cut(s) 143, 214, 386
GsuI CTGGAG 1 cut(s) 321
HaeIII GGCC 1 cut(s) 64
HapII CCGG 1 cut(s) 408
Hin1II CATG 3 cut(s) 50, 113, 187
HinfI GANTC 1 cut(s) 8
HpaII CCGG 1 cut(s) 408
HphI GGTGA 2 cut(s) 62, 422
Hpy188I TCNGA 1 cut(s) 294
Hpy188III TCNNGA 1 cut(s) 21
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 2 cut(s) 290, 338
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 1 cut(s) 46
HpyF3I CTNAG 2 cut(s) 368, 387
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 3 cut(s) 50, 113, 187
Kzo9I GATC 2 cut(s) 135, 151
MaeI CTAG 2 cut(s) 21, 392
MaeII ACGT 1 cut(s) 238
MaeIII GTNAC 1 cut(s) 332
MalI GATC 2 cut(s) 137, 153
MboI GATC 2 cut(s) 135, 151
MboII GAAGA 1 cut(s) 17
MflI RGATCY 1 cut(s) 135
MlsI TGGCCA 1 cut(s) 64
MluCI AATT 3 cut(s) 41, 56, 245
MluNI TGGCCA 1 cut(s) 64
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 2 cut(s) 365, 406
Mox20I TGGCCA 1 cut(s) 64
MroXI GAANNNNTTC 1 cut(s) 80
MscI TGGCCA 1 cut(s) 64
MseI TTAA 2 cut(s) 248, 354
MslI CAYNNNNRTG 1 cut(s) 51
Msp20I TGGCCA 1 cut(s) 64
MspA1I CMGCKG 1 cut(s) 386
MspI CCGG 1 cut(s) 408
Mva1269I GAATGC 1 cut(s) 272
NcoI CCATGG 1 cut(s) 183
NdeII GATC 2 cut(s) 135, 151
NlaIII CATG 3 cut(s) 50, 113, 187
NmuCI GTSAC 1 cut(s) 332
NspV TTCGAA 1 cut(s) 318
PctI GAATGC 1 cut(s) 272
PdmI GAANNNNTTC 1 cut(s) 80
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
PshAI GACNNNNGTC 1 cut(s) 288
PshBI ATTAAT 1 cut(s) 248
PspFI CCCAGC 3 cut(s) 139, 210, 382
PspPI GGNCC 1 cut(s) 358
PsuI RGATCY 1 cut(s) 135
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 2 cut(s) 340, 404
RsaNI GTAC 2 cut(s) 339, 403
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 2 cut(s) 248, 354
Sau3AI GATC 2 cut(s) 135, 151
Sau96I GGNCC 1 cut(s) 358
ScaI AGTACT 1 cut(s) 404
SchI GAGTC 1 cut(s) 2
SetI ASST 8 cut(s) 82, 166, 212, 241, 360, 388, 393, 417
SfuI TTCGAA 1 cut(s) 318
SinI GGWCC 1 cut(s) 358
SmiMI CAYNNNNRTG 1 cut(s) 51
Sse9I AATT 3 cut(s) 41, 56, 245
SspMI CTAG 2 cut(s) 21, 392
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 2 cut(s) 290, 338
TaiI ACGT 1 cut(s) 241
TaqI TCGA 2 cut(s) 279, 318
TasI AATT 3 cut(s) 41, 56, 245
TatI WGTACW 2 cut(s) 338, 402
Tru1I TTAA 2 cut(s) 248, 354
Tru9I TTAA 2 cut(s) 248, 354
TseFI GTSAC 1 cut(s) 332
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 2 cut(s) 69, 243
VpaK11BI GGWCC 1 cut(s) 358
VspI ATTAAT 1 cut(s) 248
XapI RAATTY 1 cut(s) 56
XbaI TCTAGA 1 cut(s) 20
XmnI GAANNNNTTC 1 cut(s) 80
XspI CTAG 2 cut(s) 21, 392
ZrmI AGTACT 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.