RchiOBHm_Chr1g0342381

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000623
Physical Location & Seq
Reverse (-)
34295718 .. 34297320
1603 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56901

Sequence Viewer

Length: 159 bp
ATGGCAGATTCAGCCCAACCCTCATTAAATCCCACTGTTGAATTTCATGGCGATGAATTCTGGCCACTTTTGGGGAATCCTTTCTTTGATATCGTACTCTCAAAATCTCATATGAATCCCTTAAATGGTAATTTTCCTTTCAAATTCCCACGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

52

Amino Acids

5.92

Weight (kDa)

5.34

Isoelectric Point (pI)

20.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35581 FvH4_6g35581 FvH4_6g35582 FvH4_7g07710 FvH4_7g07720
malus_domestica MD02G1233300.v1.1 MD07G1080300.v1.1
prunus_persica Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G104300_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1
pyrus_communis pycom02g20150 pycom07g06390
rosa_chinensis RchiOBHm_Chr1g0342371 RchiOBHm_Chr1g0342381 RchiOBHm_Chr1g0342401 RchiOBHm_Chr1g0342491 RchiOBHm_Chr1g0342511 RchiOBHm_Chr2g0147401 RchiOBHm_Chr2g0147411
rosa_laevigata RLG00000020253 RLG00000020259 RLG00000029157 RLG00000029158
rosa_multiflora Rmu_sc0000979.1_g000010 Rmu_sc0001159.1_g000034 Rmu_sc0001159.1_g000035 Rmu_sc0005388.1_g000001 Rmu_sc0009535.1_g000001 Rmu_sc0009535.1_g000003 Rmu_sc0011976.1_g000004 Rmu_sc0011976.1_g000005 Rmu_sc0027133.1_g000002
rosa_roxburghii Rroxscaffold_2G00099550 Rroxscaffold_2G00099560 Rroxscaffold_4G00296180 Rroxscaffold_4G00312990 Rroxscaffold_4G00313010 Rroxscaffold_4G00313030 Rroxscaffold_4G00313060
rosa_rugosa Rorug01G0150600.1 Rorug01G0150700.1 Rorug01G0150800.1 Rorug01G0150900.1 Rorug01G0151000.1 Rorug01G0151100.1 Rorug01G0151200.1 Rorug01G0151300.1 Rorug01G0151400.1 Rorug02G0399500 Rorug02G0399600 Rorug02G0399700 Rorug02G0399800 Rorug02G0399800 Rorug02G0399900
rosa_samantha Rh1AG165800 Rh1AG165900 Rh1BG132300 Rh1BG132400 Rh1CG154400 Rh1CG154500 Rh1DG167200 Rh1DG167300 Rh2AG456600 Rh2AG456700 Rh2BG469100 Rh2CG444100 Rh2CG444200 Rh2DG478400 Rh2DG478500
rosa_wichuraiana Rw1G013810 Rw1G013820 Rw1G013860 Rw2G037370 Rw2G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 62
AcsI RAATTY 3 cut(s) 41, 56, 143
AfaI GTAC 1 cut(s) 96
AfiI CCNNNNNNNGG 2 cut(s) 71, 125
AgsI TTSAA 2 cut(s) 41, 142
AjiI CACGTC 1 cut(s) 152
AoxI GGCC 1 cut(s) 62
ApoI RAATTY 3 cut(s) 41, 56, 143
Asp700I GAANNNNTTC 1 cut(s) 80
BalI TGGCCA 1 cut(s) 64
BmgBI CACGTC 1 cut(s) 152
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 125
BseLI CCNNNNNNNGG 2 cut(s) 71, 125
BshFI GGCC 1 cut(s) 64
BslI CCNNNNNNNGG 2 cut(s) 71, 125
BsnI GGCC 1 cut(s) 64
BspANI GGCC 1 cut(s) 64
Bst4CI ACNGT 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 11
BsuRI GGCC 1 cut(s) 64
BtgZI GCGATG 1 cut(s) 66
BtrI CACGTC 1 cut(s) 152
BtsIMutI CAGTG 1 cut(s) 33
Csp6I GTAC 1 cut(s) 95
CviAII CATG 1 cut(s) 47
CviJI RGCY 2 cut(s) 14, 64
CviKI_1 RGCY 2 cut(s) 14, 64
CviQI GTAC 1 cut(s) 95
EaeI YGGCCR 1 cut(s) 62
Eco32I GATATC 1 cut(s) 91
EcoRI GAATTC 1 cut(s) 56
EcoRV GATATC 1 cut(s) 91
FaeI CATG 1 cut(s) 50
FaiI YATR 3 cut(s) 48, 111, 113
FatI CATG 1 cut(s) 46
FauNDI CATATG 1 cut(s) 111
HaeIII GGCC 1 cut(s) 64
Hin1II CATG 1 cut(s) 50
HinfI GANTC 3 cut(s) 8, 76, 115
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 151
Hsp92II CATG 1 cut(s) 50
LpnPI CCDG 1 cut(s) 46
MaeII ACGT 1 cut(s) 151
MlsI TGGCCA 1 cut(s) 64
MluCI AATT 4 cut(s) 41, 56, 130, 143
MluNI TGGCCA 1 cut(s) 64
MnlI CCTC 1 cut(s) 31
Mox20I TGGCCA 1 cut(s) 64
MroXI GAANNNNTTC 1 cut(s) 80
MscI TGGCCA 1 cut(s) 64
MseI TTAA 3 cut(s) 26, 122, 157
MslI CAYNNNNRTG 1 cut(s) 51
Msp20I TGGCCA 1 cut(s) 64
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeI CATATG 1 cut(s) 111
NlaIII CATG 1 cut(s) 50
PdmI GAANNNNTTC 1 cut(s) 80
PfeI GAWTC 3 cut(s) 8, 76, 115
RsaI GTAC 1 cut(s) 96
RsaNI GTAC 1 cut(s) 95
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 3 cut(s) 26, 122, 157
SetI ASST 1 cut(s) 154
SgeI CNNG 2 cut(s) 59, 73
SmiMI CAYNNNNRTG 1 cut(s) 51
Sse9I AATT 4 cut(s) 41, 56, 130, 143
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 154
TasI AATT 4 cut(s) 41, 56, 130, 143
TfiI GAWTC 3 cut(s) 8, 76, 115
Tru1I TTAA 3 cut(s) 26, 122, 157
Tru9I TTAA 3 cut(s) 26, 122, 157
TscAI CASTG 1 cut(s) 40
TspDTI ATGAA 3 cut(s) 35, 69, 128
TspRI CASTG 1 cut(s) 40
XapI RAATTY 3 cut(s) 41, 56, 143
XmnI GAANNNNTTC 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.