Prupe.2G104300_v2.0.a1

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000623
Physical Location & Seq
Forward (+)
16098507 .. 16099888
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G104300.1

Sequence Viewer

Length: 456 bp
ATGCAAATTAACAACACAGTTGATGCAGTGGGAGACCTACCCACATCAAATCCCGTGATTGAACTAGAAGGGGATGAATTTTGGCCACTTTCTGGGAAACCCTTTTTTGATGTGGTTCTCACGAAAACAACTATCAAACCCATGTACCAACTAGTGGTCCCAGGCAAATTTAATGCAACACTACCTTCCTGTTCAATCCATACGGTTCTTGCATTTCGGGGCAAGAACTGGGAGATAATATATCATGAATCATCCAGTTGTAAAAGACTTGATAACTGGAGACCATTTGCCATTGACAACAATTTGAAGGTTGGAGGTGCATGTGTGTTTGAACAACTAGAGTGCAGCAGTACTAGGCTAGTATTTAGAGTCCAAATTCTCAGAGGTGACATCCCATCTGAATTTCTAGACAAGCTCAATGGTGATAATGTAGATGCACCAATTGTTCTTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

152

Amino Acids

16.91

Weight (kDa)

5.02

Isoelectric Point (pI)

38.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35581 FvH4_6g35581 FvH4_6g35582 FvH4_7g07710 FvH4_7g07720
malus_domestica MD02G1233300.v1.1 MD07G1080300.v1.1
prunus_persica Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G104300_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1
pyrus_communis pycom02g20150 pycom07g06390
rosa_chinensis RchiOBHm_Chr1g0342371 RchiOBHm_Chr1g0342381 RchiOBHm_Chr1g0342401 RchiOBHm_Chr1g0342491 RchiOBHm_Chr1g0342511 RchiOBHm_Chr2g0147401 RchiOBHm_Chr2g0147411
rosa_laevigata RLG00000020253 RLG00000020259 RLG00000029157 RLG00000029158
rosa_multiflora Rmu_sc0000979.1_g000010 Rmu_sc0001159.1_g000034 Rmu_sc0001159.1_g000035 Rmu_sc0005388.1_g000001 Rmu_sc0009535.1_g000001 Rmu_sc0009535.1_g000003 Rmu_sc0011976.1_g000004 Rmu_sc0011976.1_g000005 Rmu_sc0027133.1_g000002
rosa_roxburghii Rroxscaffold_2G00099550 Rroxscaffold_2G00099560 Rroxscaffold_4G00296180 Rroxscaffold_4G00312990 Rroxscaffold_4G00313010 Rroxscaffold_4G00313030 Rroxscaffold_4G00313060
rosa_rugosa Rorug01G0150600.1 Rorug01G0150700.1 Rorug01G0150800.1 Rorug01G0150900.1 Rorug01G0151000.1 Rorug01G0151100.1 Rorug01G0151200.1 Rorug01G0151300.1 Rorug01G0151400.1 Rorug02G0399500 Rorug02G0399600 Rorug02G0399700 Rorug02G0399800 Rorug02G0399800 Rorug02G0399900
rosa_samantha Rh1AG165800 Rh1AG165900 Rh1BG132300 Rh1BG132400 Rh1CG154400 Rh1CG154500 Rh1DG167200 Rh1DG167300 Rh2AG456600 Rh2AG456700 Rh2BG469100 Rh2CG444100 Rh2CG444200 Rh2DG478400 Rh2DG478500
rosa_wichuraiana Rw1G013810 Rw1G013820 Rw1G013860 Rw2G037370 Rw2G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 92, 154
AcoI YGGCCR 1 cut(s) 83
AcsI RAATTY 4 cut(s) 77, 167, 375, 401
AfaI GTAC 2 cut(s) 146, 352
AfiI CCNNNNNNNGG 2 cut(s) 92, 154
AgsI TTSAA 5 cut(s) 62, 195, 307, 332, 452
AhlI ACTAGT 1 cut(s) 151
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 1 cut(s) 415
AluI AGCT 1 cut(s) 415
Alw26I GTCTC 2 cut(s) 27, 274
AoxI GGCC 1 cut(s) 83
ApeKI GCWGC 1 cut(s) 345
ApoI RAATTY 4 cut(s) 77, 167, 375, 401
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 2 cut(s) 398, 434
AvaII GGWCC 1 cut(s) 157
BaeI ACNNNNGTAYC 2 cut(s) 128, 161
BalI TGGCCA 1 cut(s) 85
BbvI GCAGC 1 cut(s) 357
BccI CCATC 1 cut(s) 403
BciT130I CCWGG 1 cut(s) 162
BcoDI GTCTC 2 cut(s) 27, 274
BcuI ACTAGT 1 cut(s) 151
BfaI CTAG 6 cut(s) 65, 152, 338, 354, 359, 407
BisI GCNGC 1 cut(s) 346
BlsI GCNGC 1 cut(s) 347
BmcAI AGTACT 1 cut(s) 352
Bme1390I CCNGG 1 cut(s) 162
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 162
BmrI ACTGGG 1 cut(s) 238
BmsI GCATC 2 cut(s) 13, 424
BmuI ACTGGG 1 cut(s) 238
BpmI CTGGAG 1 cut(s) 298
BsaI GGTCTC 2 cut(s) 27, 274
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 154
Bse1I ACTGG 3 cut(s) 233, 255, 281
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 3 cut(s) 79, 251, 390
BseLI CCNNNNNNNGG 2 cut(s) 92, 154
BseMII CTCAG 1 cut(s) 394
BseNI ACTGG 3 cut(s) 233, 255, 281
BseXI GCAGC 1 cut(s) 357
BsgI GTGCAG 1 cut(s) 364
BshFI GGCC 1 cut(s) 85
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 2 cut(s) 92, 154
BsmAI GTCTC 2 cut(s) 27, 274
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 1 cut(s) 85
Bso31I GGTCTC 2 cut(s) 27, 274
BspANI GGCC 1 cut(s) 85
BspCNI CTCAG 1 cut(s) 393
BspHI TCATGA 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 159
BspTNI GGTCTC 2 cut(s) 27, 274
BsrI ACTGG 3 cut(s) 233, 255, 281
BssECI CCNNGG 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 2 cut(s) 19, 205
BstDEI CTNAG 1 cut(s) 380
BstF5I GGATG 3 cut(s) 79, 251, 390
BstMAI GTCTC 2 cut(s) 27, 274
BstNI CCWGG 1 cut(s) 162
BstNSI RCATGY 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 357
BsuRI GGCC 1 cut(s) 85
BtsCI GGATG 3 cut(s) 79, 251, 390
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 33
CciI TCATGA 1 cut(s) 244
Cfr13I GGNCC 1 cut(s) 157
Csp6I GTAC 2 cut(s) 145, 351
CviAII CATG 3 cut(s) 142, 245, 321
CviJI RGCY 3 cut(s) 85, 358, 415
CviKI_1 RGCY 3 cut(s) 85, 358, 415
CviQI GTAC 2 cut(s) 145, 351
DdeI CTNAG 1 cut(s) 380
EaeI YGGCCR 1 cut(s) 83
Eco31I GGTCTC 2 cut(s) 27, 274
Eco47I GGWCC 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 160
FaeI CATG 3 cut(s) 145, 248, 324
FaiI YATR 5 cut(s) 143, 201, 241, 246, 322
FaqI GGGAC 1 cut(s) 143
FatI CATG 3 cut(s) 141, 244, 320
Fnu4HI GCNGC 1 cut(s) 346
FokI GGATG 3 cut(s) 86, 238, 377
Fsp4HI GCNGC 1 cut(s) 346
FspBI CTAG 6 cut(s) 65, 152, 338, 354, 359, 407
GluI GCNGC 1 cut(s) 346
GsuI CTGGAG 1 cut(s) 298
HaeIII GGCC 1 cut(s) 85
Hin1II CATG 3 cut(s) 145, 248, 324
HinfI GANTC 2 cut(s) 248, 369
HphI GGTGA 2 cut(s) 398, 434
Hpy188I TCNGA 2 cut(s) 383, 400
Hpy188III TCNNGA 4 cut(s) 121, 245, 407, 449
HpyAV CCTTC 3 cut(s) 62, 195, 301
HpyCH4III ACNGT 2 cut(s) 19, 205
HpyCH4V TGCA 7 cut(s) 4, 26, 176, 212, 320, 345, 437
HpyF3I CTNAG 1 cut(s) 380
Hsp92II CATG 3 cut(s) 145, 248, 324
LpnPI CCDG 7 cut(s) 78, 147, 174, 202, 214, 262, 268
Lsp1109I GCAGC 1 cut(s) 357
LweI GCATC 2 cut(s) 13, 424
MaeI CTAG 6 cut(s) 65, 152, 338, 354, 359, 407
MaeIII GTNAC 1 cut(s) 386
MfeI CAATTG 1 cut(s) 441
MlsI TGGCCA 1 cut(s) 85
MluCI AATT 7 cut(s) 6, 77, 167, 301, 375, 401, 441
MluNI TGGCCA 1 cut(s) 85
MlyI GAGTC 1 cut(s) 378
MmeI TCCRAC 1 cut(s) 292
MnlI CCTC 2 cut(s) 308, 377
Mox20I TGGCCA 1 cut(s) 85
MscI TGGCCA 1 cut(s) 85
MseI TTAA 2 cut(s) 9, 171
Msp20I TGGCCA 1 cut(s) 85
MspR9I CCNGG 1 cut(s) 162
MunI CAATTG 1 cut(s) 441
MvaI CCWGG 1 cut(s) 162
NlaIII CATG 3 cut(s) 145, 248, 324
NlaIV GGNNCC 1 cut(s) 159
NmuCI GTSAC 1 cut(s) 386
NspI RCATGY 1 cut(s) 324
PagI TCATGA 1 cut(s) 244
PfeI GAWTC 1 cut(s) 248
PflMI CCANNNNNTGG 2 cut(s) 92, 154
PkrI GCNGC 1 cut(s) 347
PleI GAGTC 1 cut(s) 377
PpsI GAGTC 1 cut(s) 377
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 159
PspPI GGNCC 1 cut(s) 157
RsaI GTAC 2 cut(s) 146, 352
RsaNI GTAC 2 cut(s) 145, 351
SaqAI TTAA 2 cut(s) 9, 171
SatI GCNGC 1 cut(s) 346
Sau96I GGNCC 1 cut(s) 157
ScaI AGTACT 1 cut(s) 352
SchI GAGTC 1 cut(s) 378
ScrFI CCNGG 1 cut(s) 162
SetI ASST 6 cut(s) 39, 187, 312, 319, 388, 417
SfaNI GCATC 2 cut(s) 13, 424
SinI GGWCC 1 cut(s) 157
SpeI ACTAGT 1 cut(s) 151
Sse9I AATT 7 cut(s) 6, 77, 167, 301, 375, 401, 441
SspMI CTAG 6 cut(s) 65, 152, 338, 354, 359, 407
StyD4I CCNGG 1 cut(s) 160
TaaI ACNGT 2 cut(s) 19, 205
TasI AATT 7 cut(s) 6, 77, 167, 301, 375, 401, 441
TatI WGTACW 1 cut(s) 350
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 2 cut(s) 9, 171
Tru9I TTAA 2 cut(s) 9, 171
TscAI CASTG 1 cut(s) 33
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 1 cut(s) 345
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 2 cut(s) 90, 261
TspRI CASTG 1 cut(s) 33
Van91I CCANNNNNTGG 2 cut(s) 92, 154
VpaK11BI GGWCC 1 cut(s) 157
XapI RAATTY 4 cut(s) 77, 167, 375, 401
XbaI TCTAGA 1 cut(s) 406
XceI RCATGY 1 cut(s) 324
XspI CTAG 6 cut(s) 65, 152, 338, 354, 359, 407
ZrmI AGTACT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.