Rmu_sc0005388.1_g000001

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005388.1
OG0000623
Physical Location & Seq
Reverse (-)
2 .. 638
637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005388.1_g000001.1.cds

Sequence Viewer

Length: 389 bp
atggaagactcggcacaattcagagcaacgcccacaattgaattgcatggcgatgaattctggccactttcagggaaacctttctttgatatcatactcacaaaatcccatgtcaaacccatttatgaaatggagataccagccaaacttgatcctgtattacccgctggtgcttcagtccccatggttctcagctttggggacaagagctgggagatgacatataatgaaataaaactagtggatcgacacttgtggagaacattcgtcgatgacaacaatctgaaggctggagatggatgtatttttgaactaacgaggtgtgacagtacaaaagtagtattcaaggtccaaatcctcagaggtgacatcccagctgagctagtaga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

129

Amino Acids

14.64

Weight (kDa)

4.97

Isoelectric Point (pI)

27.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35581 FvH4_6g35581 FvH4_6g35582 FvH4_7g07710 FvH4_7g07720
malus_domestica MD02G1233300.v1.1 MD07G1080300.v1.1
prunus_persica Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G104300_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1
pyrus_communis pycom02g20150 pycom07g06390
rosa_chinensis RchiOBHm_Chr1g0342371 RchiOBHm_Chr1g0342381 RchiOBHm_Chr1g0342401 RchiOBHm_Chr1g0342491 RchiOBHm_Chr1g0342511 RchiOBHm_Chr2g0147401 RchiOBHm_Chr2g0147411
rosa_laevigata RLG00000020253 RLG00000020259 RLG00000029157 RLG00000029158
rosa_multiflora Rmu_sc0000979.1_g000010 Rmu_sc0001159.1_g000034 Rmu_sc0001159.1_g000035 Rmu_sc0005388.1_g000001 Rmu_sc0009535.1_g000001 Rmu_sc0009535.1_g000003 Rmu_sc0011976.1_g000004 Rmu_sc0011976.1_g000005 Rmu_sc0027133.1_g000002
rosa_roxburghii Rroxscaffold_2G00099550 Rroxscaffold_2G00099560 Rroxscaffold_4G00296180 Rroxscaffold_4G00312990 Rroxscaffold_4G00313010 Rroxscaffold_4G00313030 Rroxscaffold_4G00313060
rosa_rugosa Rorug01G0150600.1 Rorug01G0150700.1 Rorug01G0150800.1 Rorug01G0150900.1 Rorug01G0151000.1 Rorug01G0151100.1 Rorug01G0151200.1 Rorug01G0151300.1 Rorug01G0151400.1 Rorug02G0399500 Rorug02G0399600 Rorug02G0399700 Rorug02G0399800 Rorug02G0399800 Rorug02G0399900
rosa_samantha Rh1AG165800 Rh1AG165900 Rh1BG132300 Rh1BG132400 Rh1CG154400 Rh1CG154500 Rh1DG167200 Rh1DG167300 Rh2AG456600 Rh2AG456700 Rh2BG469100 Rh2CG444100 Rh2CG444200 Rh2DG478400 Rh2DG478500
rosa_wichuraiana Rw1G013810 Rw1G013820 Rw1G013860 Rw2G037370 Rw2G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 165
AclWI GGATC 2 cut(s) 146, 252
AcoI YGGCCR 1 cut(s) 62
AcsI RAATTY 1 cut(s) 56
AcuI CTGAAG 2 cut(s) 159, 305
AfaI GTAC 1 cut(s) 331
AfiI CCNNNNNNNGG 1 cut(s) 71
AgsI TTSAA 3 cut(s) 41, 311, 346
AhlI ACTAGT 1 cut(s) 238
AluBI AGCT 4 cut(s) 195, 210, 377, 382
AluI AGCT 4 cut(s) 195, 210, 377, 382
AlwI GGATC 2 cut(s) 146, 252
AoxI GGCC 1 cut(s) 62
ApoI RAATTY 1 cut(s) 56
Asp700I GAANNNNTTC 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 349
AsuHPI GGTGA 1 cut(s) 377
AvaII GGWCC 1 cut(s) 349
BalI TGGCCA 1 cut(s) 64
BbsI GAAGAC 1 cut(s) 12
BccI CCATC 1 cut(s) 290
BcuI ACTAGT 1 cut(s) 238
BfaI CTAG 2 cut(s) 239, 383
BlpI GCTNAGC 1 cut(s) 378
Bme18I GGWCC 1 cut(s) 349
BmgT120I GGNCC 1 cut(s) 349
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 312
Bpu1102I GCTNAGC 1 cut(s) 378
BsaJI CCNNGG 1 cut(s) 183
Bsc4I CCNNNNNNNGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 2 cut(s) 305, 369
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMII CTCAG 3 cut(s) 205, 369, 373
BseYI CCCAGC 2 cut(s) 210, 373
BshFI GGCC 1 cut(s) 64
BslFI GGGAC 2 cut(s) 164, 215
BslI CCNNNNNNNGG 1 cut(s) 71
BsmFI GGGAC 2 cut(s) 164, 215
BsnI GGCC 1 cut(s) 64
Bsp143I GATC 2 cut(s) 151, 244
Bsp1720I GCTNAGC 1 cut(s) 378
Bsp19I CCATGG 1 cut(s) 183
BspACI CCGC 1 cut(s) 165
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 3 cut(s) 204, 370, 372
BspPI GGATC 2 cut(s) 146, 252
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 2 cut(s) 151, 244
BssT1I CCWWGG 1 cut(s) 183
Bst4CI ACNGT 1 cut(s) 329
BstDEI CTNAG 3 cut(s) 191, 359, 378
BstDSI CCRYGG 1 cut(s) 183
BstF5I GGATG 2 cut(s) 305, 369
BstKTI GATC 2 cut(s) 154, 247
BstMBI GATC 2 cut(s) 151, 244
BstV2I GAAGAC 1 cut(s) 12
BsuRI GGCC 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 183
BtgZI GCGATG 1 cut(s) 66
BtsCI GGATG 2 cut(s) 305, 369
Cfr13I GGNCC 1 cut(s) 349
Csp6I GTAC 1 cut(s) 330
CviAII CATG 3 cut(s) 47, 110, 184
CviJI RGCY 7 cut(s) 64, 143, 195, 210, 290, 377, 382
CviKI_1 RGCY 7 cut(s) 64, 143, 195, 210, 290, 377, 382
CviQI GTAC 1 cut(s) 330
DdeI CTNAG 3 cut(s) 191, 359, 378
DpnI GATC 2 cut(s) 153, 246
DpnII GATC 2 cut(s) 151, 244
EaeI YGGCCR 1 cut(s) 62
Eco130I CCWWGG 1 cut(s) 183
Eco32I GATATC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 349
Eco57I CTGAAG 2 cut(s) 159, 305
EcoRI GAATTC 1 cut(s) 56
EcoRV GATATC 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 3 cut(s) 50, 113, 187
FaiI YATR 7 cut(s) 48, 95, 111, 126, 185, 223, 225
FaqI GGGAC 2 cut(s) 164, 215
FatI CATG 3 cut(s) 46, 109, 183
FauI CCCGC 1 cut(s) 172
FokI GGATG 2 cut(s) 312, 356
FspBI CTAG 2 cut(s) 239, 383
GsaI CCCAGC 2 cut(s) 214, 377
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 1 cut(s) 64
Hin1II CATG 3 cut(s) 50, 113, 187
HinfI GANTC 1 cut(s) 8
HphI GGTGA 1 cut(s) 377
Hpy188I TCNGA 3 cut(s) 23, 285, 362
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 1 cut(s) 280
HpyCH4III ACNGT 1 cut(s) 329
HpyCH4V TGCA 1 cut(s) 46
HpyF3I CTNAG 3 cut(s) 191, 359, 378
Hsp92II CATG 3 cut(s) 50, 113, 187
Kzo9I GATC 2 cut(s) 151, 244
LpnPI CCDG 7 cut(s) 46, 57, 153, 153, 168, 196, 276
MaeI CTAG 2 cut(s) 239, 383
MaeIII GTNAC 2 cut(s) 323, 365
MalI GATC 2 cut(s) 153, 246
MboI GATC 2 cut(s) 151, 244
MboII GAAGA 1 cut(s) 17
MfeI CAATTG 1 cut(s) 36
MlsI TGGCCA 1 cut(s) 64
MluCI AATT 4 cut(s) 17, 36, 41, 56
MluNI TGGCCA 1 cut(s) 64
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 3 cut(s) 312, 356, 368
Mox20I TGGCCA 1 cut(s) 64
MroXI GAANNNNTTC 1 cut(s) 80
MscI TGGCCA 1 cut(s) 64
MslI CAYNNNNRTG 1 cut(s) 51
Msp20I TGGCCA 1 cut(s) 64
MspA1I CMGCKG 2 cut(s) 167, 377
MunI CAATTG 1 cut(s) 36
NcoI CCATGG 1 cut(s) 183
NdeII GATC 2 cut(s) 151, 244
NlaIII CATG 3 cut(s) 50, 113, 187
NmuCI GTSAC 2 cut(s) 323, 365
PdmI GAANNNNTTC 1 cut(s) 80
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
PspFI CCCAGC 2 cut(s) 210, 373
PspPI GGNCC 1 cut(s) 349
PvuII CAGCTG 1 cut(s) 377
RsaI GTAC 1 cut(s) 331
RsaNI GTAC 1 cut(s) 330
RseI CAYNNNNRTG 1 cut(s) 51
Sau3AI GATC 2 cut(s) 151, 244
Sau96I GGNCC 1 cut(s) 349
SchI GAGTC 1 cut(s) 2
SetI ASST 8 cut(s) 82, 197, 212, 323, 351, 367, 379, 384
SinI GGWCC 1 cut(s) 349
SmiMI CAYNNNNRTG 1 cut(s) 51
SpeI ACTAGT 1 cut(s) 238
Sse9I AATT 4 cut(s) 17, 36, 41, 56
SsiI CCGC 1 cut(s) 165
SspMI CTAG 2 cut(s) 239, 383
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 1 cut(s) 329
TaqI TCGA 2 cut(s) 247, 270
TasI AATT 4 cut(s) 17, 36, 41, 56
TatI WGTACW 1 cut(s) 329
TseFI GTSAC 2 cut(s) 323, 365
Tsp45I GTSAC 2 cut(s) 323, 365
TspDTI ATGAA 3 cut(s) 69, 141, 243
VpaK11BI GGWCC 1 cut(s) 349
XapI RAATTY 1 cut(s) 56
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XmnI GAANNNNTTC 1 cut(s) 80
XspI CTAG 2 cut(s) 239, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.