pycom02g20150

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000623
Physical Location & Seq
Reverse (-)
18304839 .. 18305450
612 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g20150.2

Sequence Viewer

Length: 387 bp
ATGAGTTTTGGCCGCTCTCAGAGAAACCCTTTTTTGAAGTCGTTATCACAAAAGCAAATGTCAAGCCCTCTTATCAAATGGTCGATCCCGGGAAAATTTCAACAAACACTACCTTCCTGTTCAATTCCTACTGTTCTCACGTTTGGAGGCAAAAACTGGGAGATGACATATACACACGGCTCTGGTCAGAGAAAGTTTGATACTAACTGGAGAGAATTTGTCAACGACAACAATTTGAAGGTTGGAGATGCATGTGTATTCGAACTCCTGGAGTGCAGCAGCACAAAACTCGTATTCAGAGTCCAAATTCTCAGAGGTGACATCCCATCTGAACTTCTAGGCAAGCTGAAAGGTGAGACTGTAGATGCACCCATAATTATTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

129

Amino Acids

14.43

Weight (kDa)

9.12

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35581 FvH4_6g35581 FvH4_6g35582 FvH4_7g07710 FvH4_7g07720
malus_domestica MD02G1233300.v1.1 MD07G1080300.v1.1
prunus_persica Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G104300_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1
pyrus_communis pycom02g20150 pycom07g06390
rosa_chinensis RchiOBHm_Chr1g0342371 RchiOBHm_Chr1g0342381 RchiOBHm_Chr1g0342401 RchiOBHm_Chr1g0342491 RchiOBHm_Chr1g0342511 RchiOBHm_Chr2g0147401 RchiOBHm_Chr2g0147411
rosa_laevigata RLG00000020253 RLG00000020259 RLG00000029157 RLG00000029158
rosa_multiflora Rmu_sc0000979.1_g000010 Rmu_sc0001159.1_g000034 Rmu_sc0001159.1_g000035 Rmu_sc0005388.1_g000001 Rmu_sc0009535.1_g000001 Rmu_sc0009535.1_g000003 Rmu_sc0011976.1_g000004 Rmu_sc0011976.1_g000005 Rmu_sc0027133.1_g000002
rosa_roxburghii Rroxscaffold_2G00099550 Rroxscaffold_2G00099560 Rroxscaffold_4G00296180 Rroxscaffold_4G00312990 Rroxscaffold_4G00313010 Rroxscaffold_4G00313030 Rroxscaffold_4G00313060
rosa_rugosa Rorug01G0150600.1 Rorug01G0150700.1 Rorug01G0150800.1 Rorug01G0150900.1 Rorug01G0151000.1 Rorug01G0151100.1 Rorug01G0151200.1 Rorug01G0151300.1 Rorug01G0151400.1 Rorug02G0399500 Rorug02G0399600 Rorug02G0399700 Rorug02G0399800 Rorug02G0399800 Rorug02G0399900
rosa_samantha Rh1AG165800 Rh1AG165900 Rh1BG132300 Rh1BG132400 Rh1CG154400 Rh1CG154500 Rh1DG167200 Rh1DG167300 Rh2AG456600 Rh2AG456700 Rh2BG469100 Rh2CG444100 Rh2CG444200 Rh2DG478400 Rh2DG478500
rosa_wichuraiana Rw1G013810 Rw1G013820 Rw1G013860 Rw2G037370 Rw2G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 15
AciI CCGC 1 cut(s) 13
AclWI GGATC 1 cut(s) 79
AcoI YGGCCR 1 cut(s) 10
AcsI RAATTY 3 cut(s) 95, 215, 306
AgsI TTSAA 4 cut(s) 37, 101, 123, 238
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 1 cut(s) 346
AluI AGCT 1 cut(s) 346
Alw26I GTCTC 1 cut(s) 350
AlwI GGATC 1 cut(s) 79
Ama87I CYCGRG 1 cut(s) 88
AoxI GGCC 1 cut(s) 10
ApeKI GCWGC 2 cut(s) 276, 279
ApoI RAATTY 3 cut(s) 95, 215, 306
AsuC2I CCSGG 2 cut(s) 89, 90
AsuHPI GGTGA 2 cut(s) 329, 365
AsuII TTCGAA 1 cut(s) 261
AvaI CYCGRG 1 cut(s) 88
BbvI GCAGC 2 cut(s) 288, 291
BccI CCATC 1 cut(s) 334
BceAI ACGGC 1 cut(s) 193
BcgI CGANNNNNNTGC 2 cut(s) 271, 305
BciT130I CCWGG 1 cut(s) 269
BcnI CCSGG 2 cut(s) 89, 90
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 1 cut(s) 338
BfmI CTRYAG 1 cut(s) 360
BisI GCNGC 3 cut(s) 13, 277, 280
BlsI GCNGC 3 cut(s) 14, 278, 281
Bme1390I CCNGG 3 cut(s) 89, 90, 269
BmeT110I CYCGRG 1 cut(s) 88
BmrFI CCNGG 3 cut(s) 89, 90, 269
BmrI ACTGGG 1 cut(s) 166
BmsI GCATC 2 cut(s) 238, 355
BmuI ACTGGG 1 cut(s) 166
BpmI CTGGAG 2 cut(s) 229, 290
Bpu14I TTCGAA 1 cut(s) 261
BpuMI CCSGG 2 cut(s) 89, 90
BsaJI CCNNGG 1 cut(s) 88
Bse1I ACTGG 2 cut(s) 161, 212
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 1 cut(s) 321
BseMII CTCAG 2 cut(s) 32, 325
BseNI ACTGG 2 cut(s) 161, 212
BseXI GCAGC 2 cut(s) 288, 291
BsgI GTGCAG 1 cut(s) 295
BshFI GGCC 1 cut(s) 12
BsiHKCI CYCGRG 1 cut(s) 88
BsiSI CCGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 350
BsnI GGCC 1 cut(s) 12
BsoBI CYCGRG 1 cut(s) 88
Bsp119I TTCGAA 1 cut(s) 261
Bsp143I GATC 1 cut(s) 84
BspACI CCGC 1 cut(s) 13
BspANI GGCC 1 cut(s) 12
BspCNI CTCAG 2 cut(s) 31, 324
BspPI GGATC 1 cut(s) 79
BspT104I TTCGAA 1 cut(s) 261
BsrBI CCGCTC 1 cut(s) 15
BsrI ACTGG 2 cut(s) 161, 212
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 2 cut(s) 133, 361
BstBI TTCGAA 1 cut(s) 261
BstC8I GCNNGC 1 cut(s) 344
BstDEI CTNAG 2 cut(s) 18, 311
BstF5I GGATG 1 cut(s) 321
BstKTI GATC 1 cut(s) 87
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 1 cut(s) 84
BstNI CCWGG 1 cut(s) 269
BstNSI RCATGY 1 cut(s) 255
BstSCI CCNGG 3 cut(s) 87, 88, 267
BstSFI CTRYAG 1 cut(s) 360
BstV1I GCAGC 2 cut(s) 288, 291
BsuRI GGCC 1 cut(s) 12
BtsCI GGATG 1 cut(s) 321
Cac8I GCNNGC 1 cut(s) 344
Cfr9I CCCGGG 1 cut(s) 88
CviAII CATG 1 cut(s) 252
CviJI RGCY 4 cut(s) 12, 66, 180, 346
CviKI_1 RGCY 4 cut(s) 12, 66, 180, 346
DdeI CTNAG 2 cut(s) 18, 311
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
EaeI YGGCCR 1 cut(s) 10
Eco88I CYCGRG 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 267
EcoT22I ATGCAT 1 cut(s) 253
FaeI CATG 1 cut(s) 255
FaiI YATR 4 cut(s) 169, 171, 253, 374
FatI CATG 1 cut(s) 251
Fnu4HI GCNGC 3 cut(s) 13, 277, 280
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 3 cut(s) 13, 277, 280
FspBI CTAG 1 cut(s) 338
GluI GCNGC 3 cut(s) 13, 277, 280
GsuI CTGGAG 2 cut(s) 229, 290
HaeIII GGCC 1 cut(s) 12
HapII CCGG 1 cut(s) 89
Hin1II CATG 1 cut(s) 255
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 1 cut(s) 300
HpaII CCGG 1 cut(s) 89
HphI GGTGA 2 cut(s) 329, 365
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 5 cut(s) 21, 189, 299, 314, 331
Hpy8I GTNNAC 1 cut(s) 223
HpyAV CCTTC 2 cut(s) 123, 232
HpyCH4III ACNGT 2 cut(s) 133, 361
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 3 cut(s) 251, 276, 368
HpyF3I CTNAG 2 cut(s) 18, 311
HpySE526I ACGT 1 cut(s) 140
Hsp92II CATG 1 cut(s) 255
Kzo9I GATC 1 cut(s) 84
LpnPI CCDG 7 cut(s) 102, 130, 142, 168, 193, 254, 281
Lsp1109I GCAGC 2 cut(s) 288, 291
LweI GCATC 2 cut(s) 238, 355
MaeI CTAG 1 cut(s) 338
MaeII ACGT 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 317
MalI GATC 1 cut(s) 86
MbiI CCGCTC 1 cut(s) 15
MboI GATC 1 cut(s) 84
MluCI AATT 6 cut(s) 95, 123, 215, 232, 306, 375
MlyI GAGTC 1 cut(s) 309
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 3 cut(s) 78, 140, 308
Mph1103I ATGCAT 1 cut(s) 253
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 3 cut(s) 89, 90, 269
MvaI CCWGG 1 cut(s) 269
NciI CCSGG 2 cut(s) 89, 90
NdeII GATC 1 cut(s) 84
NlaIII CATG 1 cut(s) 255
NmuCI GTSAC 1 cut(s) 317
NsiI ATGCAT 1 cut(s) 253
NspI RCATGY 1 cut(s) 255
NspV TTCGAA 1 cut(s) 261
PfoI TCCNGGA 1 cut(s) 267
PkrI GCNGC 3 cut(s) 14, 278, 281
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
SatI GCNGC 3 cut(s) 13, 277, 280
Sau3AI GATC 1 cut(s) 84
SchI GAGTC 1 cut(s) 309
ScrFI CCNGG 3 cut(s) 89, 90, 269
SetI ASST 6 cut(s) 115, 143, 243, 319, 348, 355
SfaNI GCATC 2 cut(s) 238, 355
SfcI CTRYAG 1 cut(s) 360
SfuI TTCGAA 1 cut(s) 261
SmaI CCCGGG 1 cut(s) 90
Sse9I AATT 6 cut(s) 95, 123, 215, 232, 306, 375
SsiI CCGC 1 cut(s) 13
SspMI CTAG 1 cut(s) 338
StyD4I CCNGG 3 cut(s) 87, 88, 267
TaaI ACNGT 2 cut(s) 133, 361
TaiI ACGT 1 cut(s) 143
TaqI TCGA 2 cut(s) 83, 261
TasI AATT 6 cut(s) 95, 123, 215, 232, 306, 375
TauI GCSGC 1 cut(s) 15
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 2 cut(s) 276, 279
Tsp45I GTSAC 1 cut(s) 317
TspMI CCCGGG 1 cut(s) 88
XapI RAATTY 3 cut(s) 95, 215, 306
XceI RCATGY 1 cut(s) 255
XmaI CCCGGG 1 cut(s) 88
XspI CTAG 1 cut(s) 338
Zsp2I ATGCAT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.