Rorug02G0399500

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000623
Physical Location & Seq
Forward (+)
51060475 .. 51061412
938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0399500.1

Sequence Viewer

Length: 456 bp
ATGGAGGCCACCACCGAGGAACAACAACCCGGAACACTAGTGCACCACATCCTCCCTCCCCGCCTTGAAGACGCCGGCCTCGAAGACTGCGCCCTCCCCCCCGATTCAATCAAGCAAGCCTTCCTCAAAGCCGCCACCGCCGTCAAGTCACGCGCCACCTCCCTCTTCACCGACGACGAGGAAGAAGAAGAAGAAGAAGACTGCGTCAGGGATCCCTGGCCGGCGGTGGTCGGAGCCGTGACGGAGGGGAATCCTCCGGGAGCTTGCGGCGGAGATGAAGTGGTGGTGGGCGGTGAGGAGGAGAAGAGGGATAAGGTGGTTGTGGGAGGTGAAGATGTGAGGGAGGTTGGTGGAGATAAGGCTTGTGTTGATGGGTTGGTTGGGTTAGAGATTGAAGAGAAGAAGAATGAGGGTAAGAATGATGAGGGACCTATTTTGGTTGGAGGTTATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

151

Amino Acids

15.95

Weight (kDa)

4.2

Isoelectric Point (pI)

63.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35581 FvH4_6g35581 FvH4_6g35582 FvH4_7g07710 FvH4_7g07720
malus_domestica MD02G1233300.v1.1 MD07G1080300.v1.1
prunus_persica Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G104300_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1
pyrus_communis pycom02g20150 pycom07g06390
rosa_chinensis RchiOBHm_Chr1g0342371 RchiOBHm_Chr1g0342381 RchiOBHm_Chr1g0342401 RchiOBHm_Chr1g0342491 RchiOBHm_Chr1g0342511 RchiOBHm_Chr2g0147401 RchiOBHm_Chr2g0147411
rosa_laevigata RLG00000020253 RLG00000020259 RLG00000029157 RLG00000029158
rosa_multiflora Rmu_sc0000979.1_g000010 Rmu_sc0001159.1_g000034 Rmu_sc0001159.1_g000035 Rmu_sc0005388.1_g000001 Rmu_sc0009535.1_g000001 Rmu_sc0009535.1_g000003 Rmu_sc0011976.1_g000004 Rmu_sc0011976.1_g000005 Rmu_sc0027133.1_g000002
rosa_roxburghii Rroxscaffold_2G00099550 Rroxscaffold_2G00099560 Rroxscaffold_4G00296180 Rroxscaffold_4G00312990 Rroxscaffold_4G00313010 Rroxscaffold_4G00313030 Rroxscaffold_4G00313060
rosa_rugosa Rorug01G0150600.1 Rorug01G0150700.1 Rorug01G0150800.1 Rorug01G0150900.1 Rorug01G0151000.1 Rorug01G0151100.1 Rorug01G0151200.1 Rorug01G0151300.1 Rorug01G0151400.1 Rorug02G0399500 Rorug02G0399600 Rorug02G0399700 Rorug02G0399800 Rorug02G0399800 Rorug02G0399900
rosa_samantha Rh1AG165800 Rh1AG165900 Rh1BG132300 Rh1BG132400 Rh1CG154400 Rh1CG154500 Rh1DG167200 Rh1DG167300 Rh2AG456600 Rh2AG456700 Rh2BG469100 Rh2CG444100 Rh2CG444200 Rh2DG478400 Rh2DG478500
rosa_wichuraiana Rw1G013810 Rw1G013820 Rw1G013860 Rw2G037370 Rw2G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 153
AciI CCGC 7 cut(s) 61, 132, 138, 224, 267, 270, 291
AclWI GGATC 2 cut(s) 206, 219
AcoI YGGCCR 1 cut(s) 218
AcyI GRCGYC 1 cut(s) 72
AgsI TTSAA 3 cut(s) 68, 108, 395
AhlI ACTAGT 1 cut(s) 37
AjnI CCWGG 1 cut(s) 215
AluBI AGCT 1 cut(s) 263
AluI AGCT 1 cut(s) 263
Alw21I GWGCWC 1 cut(s) 45
Alw44I GTGCAC 1 cut(s) 41
AlwI GGATC 2 cut(s) 206, 219
AoxI GGCC 3 cut(s) 6, 76, 218
ApaLI GTGCAC 1 cut(s) 41
AspLEI GCGC 2 cut(s) 92, 155
AspS9I GGNCC 1 cut(s) 428
AsuC2I CCSGG 2 cut(s) 30, 258
AsuHPI GGTGA 3 cut(s) 160, 305, 341
AvaII GGWCC 1 cut(s) 428
BaeGI GKGCMC 1 cut(s) 45
BamHI GGATCC 1 cut(s) 211
BbsI GAAGAC 3 cut(s) 75, 90, 204
Bbv12I GWGCWC 1 cut(s) 45
BccI CCATC 1 cut(s) 365
BceAI ACGGC 2 cut(s) 125, 221
BciT130I CCWGG 1 cut(s) 217
BcnI CCSGG 2 cut(s) 30, 258
BcuI ACTAGT 1 cut(s) 37
BfaI CTAG 1 cut(s) 38
BisI GCNGC 2 cut(s) 132, 268
BlsI GCNGC 2 cut(s) 133, 269
Bme1390I CCNGG 3 cut(s) 30, 217, 258
Bme18I GGWCC 1 cut(s) 428
BmgT120I GGNCC 1 cut(s) 428
BmiI GGNNCC 3 cut(s) 213, 235, 429
BmrFI CCNGG 3 cut(s) 30, 217, 258
BpiI GAAGAC 3 cut(s) 75, 90, 204
BpuMI CCSGG 2 cut(s) 30, 258
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 15, 215
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bse118I RCCGGY 2 cut(s) 74, 220
BseBI CCWGG 1 cut(s) 217
BseDI CCNNGG 2 cut(s) 15, 215
BseGI GGATG 1 cut(s) 48
BseRI GAGGAG 2 cut(s) 311, 314
BseSI GKGCMC 1 cut(s) 45
Bsh1236I CGCG 1 cut(s) 153
BshFI GGCC 3 cut(s) 8, 78, 220
BsiHKAI GWGCWC 1 cut(s) 45
BsiSI CCGG 4 cut(s) 30, 75, 221, 257
BslFI GGGAC 1 cut(s) 441
BsmFI GGGAC 1 cut(s) 441
BsnI GGCC 3 cut(s) 8, 78, 220
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 1 cut(s) 211
BspACI CCGC 7 cut(s) 61, 132, 138, 224, 267, 270, 291
BspANI GGCC 3 cut(s) 8, 78, 220
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 3 cut(s) 213, 235, 429
BspPI GGATC 2 cut(s) 206, 219
BsrFI RCCGGY 2 cut(s) 74, 220
BssAI RCCGGY 2 cut(s) 74, 220
BssECI CCNNGG 2 cut(s) 15, 215
BssMI GATC 1 cut(s) 211
BssNI GRCGYC 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 217
Bst6I CTCTTC 3 cut(s) 170, 299, 390
BstACI GRCGYC 1 cut(s) 72
BstC8I GCNNGC 4 cut(s) 76, 117, 222, 265
BstF5I GGATG 1 cut(s) 48
BstFNI CGCG 1 cut(s) 153
BstHHI GCGC 2 cut(s) 92, 155
BstKTI GATC 1 cut(s) 214
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNI CCWGG 1 cut(s) 217
BstSCI CCNGG 3 cut(s) 28, 215, 256
BstSLI GKGCMC 1 cut(s) 45
BstUI CGCG 1 cut(s) 153
BstV2I GAAGAC 3 cut(s) 75, 90, 204
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BsuRI GGCC 3 cut(s) 8, 78, 220
BtsCI GGATG 1 cut(s) 48
Cac8I GCNNGC 4 cut(s) 76, 117, 222, 265
CfoI GCGC 2 cut(s) 92, 155
Cfr10I RCCGGY 2 cut(s) 74, 220
Cfr13I GGNCC 1 cut(s) 428
CseI GACGC 2 cut(s) 80, 193
CviJI RGCY 8 cut(s) 8, 78, 119, 131, 220, 236, 263, 362
CviKI_1 RGCY 8 cut(s) 8, 78, 119, 131, 220, 236, 263, 362
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
EaeI YGGCCR 1 cut(s) 218
Eam1104I CTCTTC 3 cut(s) 170, 299, 390
EarI CTCTTC 3 cut(s) 170, 299, 390
EciI GGCGGA 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 428
EcoO109I RGGNCCY 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 215
FaiI YATR 1 cut(s) 450
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FaqI GGGAC 1 cut(s) 441
FauI CCCGC 1 cut(s) 68
Fnu4HI GCNGC 2 cut(s) 132, 268
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 2 cut(s) 132, 268
FspBI CTAG 1 cut(s) 38
GlaI GCGC 2 cut(s) 91, 154
GluI GCNGC 2 cut(s) 132, 268
HaeIII GGCC 3 cut(s) 8, 78, 220
HapII CCGG 4 cut(s) 30, 75, 221, 257
HgaI GACGC 2 cut(s) 80, 193
HhaI GCGC 2 cut(s) 92, 155
Hin1I GRCGYC 1 cut(s) 72
Hin6I GCGC 2 cut(s) 90, 153
HinP1I GCGC 2 cut(s) 90, 153
HinfI GANTC 2 cut(s) 104, 250
HpaII CCGG 4 cut(s) 30, 75, 221, 257
HphI GGTGA 3 cut(s) 160, 305, 341
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 233
Hpy8I GTNNAC 1 cut(s) 43
Hpy99I CGWCG 2 cut(s) 176, 179
HpyAV CCTTC 1 cut(s) 130
HpyCH4V TGCA 1 cut(s) 43
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
Hsp92I GRCGYC 1 cut(s) 72
HspAI GCGC 2 cut(s) 90, 153
KroI GCCGGC 2 cut(s) 74, 220
KroNI GCCGGC 2 cut(s) 76, 222
Kzo9I GATC 1 cut(s) 211
LmnI GCTCC 2 cut(s) 233, 260
LpnPI CCDG 7 cut(s) 43, 88, 193, 202, 229, 234, 270
MaeI CTAG 1 cut(s) 38
MaeIII GTNAC 2 cut(s) 147, 238
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 45
MmeI TCCRAC 2 cut(s) 211, 421
MroNI GCCGGC 2 cut(s) 74, 220
MseI TTAA 1 cut(s) 454
MspI CCGG 4 cut(s) 30, 75, 221, 257
MspR9I CCNGG 3 cut(s) 30, 217, 258
MvaI CCWGG 1 cut(s) 217
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 137
NaeI GCCGGC 2 cut(s) 76, 222
NciI CCSGG 2 cut(s) 30, 258
NdeII GATC 1 cut(s) 211
NgoMIV GCCGGC 2 cut(s) 74, 220
NlaIV GGNNCC 3 cut(s) 213, 235, 429
NmuCI GTSAC 2 cut(s) 147, 238
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PdiI GCCGGC 2 cut(s) 76, 222
PfeI GAWTC 2 cut(s) 104, 250
PflFI GACNNNGTC 1 cut(s) 203
PfoI TCCNGGA 1 cut(s) 256
PkrI GCNGC 2 cut(s) 133, 269
PpuMI RGGWCCY 1 cut(s) 428
Psp5II RGGWCCY 1 cut(s) 428
Psp6I CCWGG 1 cut(s) 215
PspGI CCWGG 1 cut(s) 215
PspN4I GGNNCC 3 cut(s) 213, 235, 429
PspPI GGNCC 1 cut(s) 428
PspPPI RGGWCCY 1 cut(s) 428
PsuI RGATCY 1 cut(s) 211
PsyI GACNNNGTC 1 cut(s) 203
SaqAI TTAA 1 cut(s) 454
SatI GCNGC 2 cut(s) 132, 268
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 1 cut(s) 428
ScrFI CCNGG 3 cut(s) 30, 217, 258
SduI GDGCHC 1 cut(s) 45
SetI ASST 7 cut(s) 161, 265, 318, 331, 348, 433, 448
SinI GGWCC 1 cut(s) 428
SpeI ACTAGT 1 cut(s) 37
SsiI CCGC 7 cut(s) 61, 132, 138, 224, 267, 270, 291
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 3 cut(s) 28, 215, 256
TaqI TCGA 1 cut(s) 81
TauI GCSGC 2 cut(s) 134, 270
TfiI GAWTC 2 cut(s) 104, 250
Tru1I TTAA 1 cut(s) 454
Tru9I TTAA 1 cut(s) 454
TseFI GTSAC 2 cut(s) 147, 238
Tsp45I GTSAC 2 cut(s) 147, 238
TspDTI ATGAA 1 cut(s) 291
TspGWI ACGGA 1 cut(s) 257
Tth111I GACNNNGTC 1 cut(s) 203
VneI GTGCAC 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 428
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.