Rh2DG478400

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000623
Physical Location & Seq
Reverse (-)
69187033 .. 69188694
1662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG478400.1

Sequence Viewer

Length: 345 bp
ATGGCAGAATCGGCTCAATCCTTATCAGATACAATAATTCAATTGCATGGCGAAGAATTTTGGCCTCTTTCAGGAAAACCTTACTTTGATATAATACTAGCAAAAACACATGTCAAACCGTATTACAAACTGGGGATCCCAGCCAAACTTCATCCAATACTACCATCTTGTTCATTCCCTACGGTTCTCACCTTTGCGGGAAAGAGTTGGGAGATGACATGTGATGGATCAAACAAAAAGCACAAAGGCTTGGACAAAGAGTCATGGAAAGCATTTATTGACGACAACAATTTGAAGTCTGGAGATGGATGCGTGGCCAATAGGCTTATTCATAACAAGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

114

Amino Acids

12.78

Weight (kDa)

8.42

Isoelectric Point (pI)

36.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35581 FvH4_6g35581 FvH4_6g35582 FvH4_7g07710 FvH4_7g07720
malus_domestica MD02G1233300.v1.1 MD07G1080300.v1.1
prunus_persica Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G104300_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1
pyrus_communis pycom02g20150 pycom07g06390
rosa_chinensis RchiOBHm_Chr1g0342371 RchiOBHm_Chr1g0342381 RchiOBHm_Chr1g0342401 RchiOBHm_Chr1g0342491 RchiOBHm_Chr1g0342511 RchiOBHm_Chr2g0147401 RchiOBHm_Chr2g0147411
rosa_laevigata RLG00000020253 RLG00000020259 RLG00000029157 RLG00000029158
rosa_multiflora Rmu_sc0000979.1_g000010 Rmu_sc0001159.1_g000034 Rmu_sc0001159.1_g000035 Rmu_sc0005388.1_g000001 Rmu_sc0009535.1_g000001 Rmu_sc0009535.1_g000003 Rmu_sc0011976.1_g000004 Rmu_sc0011976.1_g000005 Rmu_sc0027133.1_g000002
rosa_roxburghii Rroxscaffold_2G00099550 Rroxscaffold_2G00099560 Rroxscaffold_4G00296180 Rroxscaffold_4G00312990 Rroxscaffold_4G00313010 Rroxscaffold_4G00313030 Rroxscaffold_4G00313060
rosa_rugosa Rorug01G0150600.1 Rorug01G0150700.1 Rorug01G0150800.1 Rorug01G0150900.1 Rorug01G0151000.1 Rorug01G0151100.1 Rorug01G0151200.1 Rorug01G0151300.1 Rorug01G0151400.1 Rorug02G0399500 Rorug02G0399600 Rorug02G0399700 Rorug02G0399800 Rorug02G0399800 Rorug02G0399900
rosa_samantha Rh1AG165800 Rh1AG165900 Rh1BG132300 Rh1BG132400 Rh1CG154400 Rh1CG154500 Rh1DG167200 Rh1DG167300 Rh2AG456600 Rh2AG456700 Rh2BG469100 Rh2CG444100 Rh2CG444200 Rh2DG478400 Rh2DG478500
rosa_wichuraiana Rw1G013810 Rw1G013820 Rw1G013860 Rw2G037370 Rw2G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 197
AclWI GGATC 3 cut(s) 130, 143, 235
AcoI YGGCCR 1 cut(s) 315
AcsI RAATTY 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 71
AflIII ACRYGT 2 cut(s) 109, 218
AgsI TTSAA 2 cut(s) 41, 295
AhdI GACNNNNNGTC 1 cut(s) 259
AlwI GGATC 3 cut(s) 130, 143, 235
AoxI GGCC 2 cut(s) 62, 315
ApoI RAATTY 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 181
BalI TGGCCA 1 cut(s) 317
BamHI GGATCC 1 cut(s) 135
BccI CCATC 3 cut(s) 172, 218, 299
BfaI CTAG 1 cut(s) 98
BmeRI GACNNNNNGTC 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 137
BmrI ACTGGG 1 cut(s) 140
BmsI GCATC 1 cut(s) 299
BmuI ACTGGG 1 cut(s) 140
BpmI CTGGAG 1 cut(s) 321
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 135
BseGI GGATG 2 cut(s) 151, 314
BseLI CCNNNNNNNGG 1 cut(s) 71
BseNI ACTGG 1 cut(s) 135
BseYI CCCAGC 1 cut(s) 139
BshFI GGCC 2 cut(s) 64, 317
BslI CCNNNNNNNGG 1 cut(s) 71
BsnI GGCC 2 cut(s) 64, 317
Bsp143I GATC 2 cut(s) 135, 227
BspACI CCGC 1 cut(s) 197
BspANI GGCC 2 cut(s) 64, 317
BspLI GGNNCC 1 cut(s) 137
BspPI GGATC 3 cut(s) 130, 143, 235
BsrI ACTGG 1 cut(s) 135
BssMI GATC 2 cut(s) 135, 227
Bst4CI ACNGT 2 cut(s) 120, 184
BstENI CCTNNNNNAGG 1 cut(s) 69
BstF5I GGATG 2 cut(s) 151, 314
BstKTI GATC 2 cut(s) 138, 230
BstMBI GATC 2 cut(s) 135, 227
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 2 cut(s) 113, 222
BstX2I RGATCY 1 cut(s) 135
BstYI RGATCY 1 cut(s) 135
BsuRI GGCC 2 cut(s) 64, 317
BtsCI GGATG 2 cut(s) 151, 314
CviAII CATG 4 cut(s) 47, 110, 219, 264
CviJI RGCY 6 cut(s) 14, 64, 143, 249, 317, 325
CviKI_1 RGCY 6 cut(s) 14, 64, 143, 249, 317, 325
DpnI GATC 2 cut(s) 137, 229
DpnII GATC 2 cut(s) 135, 227
DriI GACNNNNNGTC 1 cut(s) 259
EaeI YGGCCR 1 cut(s) 315
Eam1105I GACNNNNNGTC 1 cut(s) 259
EcoNI CCTNNNNNAGG 1 cut(s) 69
FaeI CATG 4 cut(s) 50, 113, 222, 267
FaiI YATR 6 cut(s) 48, 92, 111, 220, 265, 333
FatI CATG 4 cut(s) 46, 109, 218, 263
FauI CCCGC 1 cut(s) 190
FokI GGATG 2 cut(s) 138, 321
FspBI CTAG 1 cut(s) 98
GsaI CCCAGC 1 cut(s) 143
GsuI CTGGAG 1 cut(s) 321
HaeIII GGCC 2 cut(s) 64, 317
Hin1II CATG 4 cut(s) 50, 113, 222, 267
HinfI GANTC 2 cut(s) 8, 260
HphI GGTGA 1 cut(s) 181
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 2 cut(s) 72, 300
HpyCH4III ACNGT 2 cut(s) 120, 184
HpyCH4V TGCA 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
Hsp92II CATG 4 cut(s) 50, 113, 222, 267
Kzo9I GATC 2 cut(s) 135, 227
LpnPI CCDG 4 cut(s) 57, 116, 153, 285
LweI GCATC 1 cut(s) 299
MaeI CTAG 1 cut(s) 98
MalI GATC 2 cut(s) 137, 229
MboI GATC 2 cut(s) 135, 227
MboII GAAGA 1 cut(s) 65
MfeI CAATTG 1 cut(s) 41
MflI RGATCY 1 cut(s) 135
MlsI TGGCCA 1 cut(s) 317
MluCI AATT 4 cut(s) 36, 41, 56, 289
MluNI TGGCCA 1 cut(s) 317
MlyI GAGTC 1 cut(s) 269
MnlI CCTC 1 cut(s) 75
Mox20I TGGCCA 1 cut(s) 317
MscI TGGCCA 1 cut(s) 317
MseI TTAA 1 cut(s) 343
Msp20I TGGCCA 1 cut(s) 317
MunI CAATTG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 2 cut(s) 135, 227
NlaIII CATG 4 cut(s) 50, 113, 222, 267
NlaIV GGNNCC 1 cut(s) 137
NspI RCATGY 2 cut(s) 113, 222
PciI ACATGT 2 cut(s) 109, 218
PfeI GAWTC 1 cut(s) 8
PleI GAGTC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 268
PscI ACATGT 2 cut(s) 109, 218
PspFI CCCAGC 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 137
PsuI RGATCY 1 cut(s) 135
SaqAI TTAA 1 cut(s) 343
Sau3AI GATC 2 cut(s) 135, 227
SchI GAGTC 1 cut(s) 269
SetI ASST 2 cut(s) 82, 194
SfaNI GCATC 1 cut(s) 299
Sse9I AATT 4 cut(s) 36, 41, 56, 289
SsiI CCGC 1 cut(s) 197
SspMI CTAG 1 cut(s) 98
TaaI ACNGT 2 cut(s) 120, 184
TasI AATT 4 cut(s) 36, 41, 56, 289
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 343
Tru9I TTAA 1 cut(s) 343
TspDTI ATGAA 3 cut(s) 140, 162, 320
XagI CCTNNNNNAGG 1 cut(s) 69
XapI RAATTY 1 cut(s) 56
XceI RCATGY 2 cut(s) 113, 222
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.