Rorug02G0399600

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000623
Physical Location & Seq
Forward (+)
51063205 .. 51068309
5105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0399600.1

Sequence Viewer

Length: 1422 bp
ATGGCTCAAGTTGGATTACCATGGTGTGGTTTGAGGTGGAGTATGGGAATGGTTGTGGCTGGTTTTCTTGTTGTGGCTTTAGTGATTGGTTCACTACAAGAAACATTCCGACAAGATGCTTCAACTTTCCAATCTGGTTATTTAAACAGTGCGCTAAGCTTTGTATGGCGACCGGGTCGATTGGGTTATGTGGCTGTTTGGCCTGAAATGGAATTTGGTTGGAGAATTGTGGTGGGAACAATAATTGGATTCATTGGAGCTGCGTTTGGGACTGTGGGAGGAGTAGGTGGGGGTGGCATTTTTGTTCCTATGCTCACTTTGATTATCGGGTTCGATGATAAATCATCAACAGCATTATCCAAGTGTATGATCACGGGTGGAGCAGCTGCAACTGTTTTTTACAACTTAAGATTAAGGCATCCTACTCTTAACTTGCCAATCATCGACTATGACCTGGCGCTTCTTTTCCAACCGATGCTTATGCTTGGGATTAGCATTGGAGTTTGTTTGAATGTAATATTTGCTGACTGGATGATTACAGTGTTGCTAATCATTATTTTCTTAGGCACATCAACTAAGGCCTTCTTCAAGGGAGTTGAGTCCTGGAAAAGAGAAACTATACTGAAGAAGGAAGTTGCCAGACTAATGCAGTCAAATGGTAATGGTAGTGAAGAAGTTGAATACAGACCTTTACCTGGGGCTCGAACCAACGATAGTCCATCAGGAACAAATGAGTCTAAAAGGAAAGAGGTTTCTATTATTGAGAATATTTGCTGGAAGGAACTTGGACTTCTGGTTGTTGTCTGGATCTTAATACTTGCGTTGCAGATCGCTAAGTATTATACCACAACTTGTTCGGTAGCATATTGGGTATTGAACCTCATGCAGATACCCGTGGCTTTTGGAGCGAGTTCATACGAGGCTGTTAGACTGTACTATGGACAAAGAGTGATTTCATCCCAGGAAGTATCAAGCACAAATTGGAAAGTGCACCATCTTATTCTTTATTGTGGCTGCGGCATAATAGCTGGTATAGTTGGTGGTTTGCTTGGACTTGGTGGAGGCTTCATTCTGGGTCCGCTTTTTCTGGAGCTGGGAGTCCCACCTCAGGTGTCGAGTGCCACAGCTACATTTGCCATGACATTTTCTGCATCCTTGTCAGTTGTTGAATACTACCTCCTCAAACGTTTTCCAGTTCCCTATGCTCTCTACTTTGCTGCTGTGGCCAGCGTTTCAGCCCTCGTAGGGCAACATGTGGTGAGAAAGGTTATTAAAATACTAGGGAGAGCGTCTATAATTATCTTCATTCTCGCCGCAACAATCTTTGTCAGTGCAATATCACTAGGTGGGGTTGGCATAGCGAATATGATTGAAGAGATTGAGAACAACGAGTATATGGGATTTGAAGACATGTGCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

473

Amino Acids

51.34

Weight (kDa)

8.03

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauE PF01925 50 - 191 2.2e-07 Sulfite exporter TauE/SafE
TauE PF01925 337 - 443 2.6e-11 Sulfite exporter TauE/SafE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35581 FvH4_6g35581 FvH4_6g35582 FvH4_7g07710 FvH4_7g07720
malus_domestica MD02G1233300.v1.1 MD07G1080300.v1.1
prunus_persica Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G104300_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1
pyrus_communis pycom02g20150 pycom07g06390
rosa_chinensis RchiOBHm_Chr1g0342371 RchiOBHm_Chr1g0342381 RchiOBHm_Chr1g0342401 RchiOBHm_Chr1g0342491 RchiOBHm_Chr1g0342511 RchiOBHm_Chr2g0147401 RchiOBHm_Chr2g0147411
rosa_laevigata RLG00000020253 RLG00000020259 RLG00000029157 RLG00000029158
rosa_multiflora Rmu_sc0000979.1_g000010 Rmu_sc0001159.1_g000034 Rmu_sc0001159.1_g000035 Rmu_sc0005388.1_g000001 Rmu_sc0009535.1_g000001 Rmu_sc0009535.1_g000003 Rmu_sc0011976.1_g000004 Rmu_sc0011976.1_g000005 Rmu_sc0027133.1_g000002
rosa_roxburghii Rroxscaffold_2G00099550 Rroxscaffold_2G00099560 Rroxscaffold_4G00296180 Rroxscaffold_4G00312990 Rroxscaffold_4G00313010 Rroxscaffold_4G00313030 Rroxscaffold_4G00313060
rosa_rugosa Rorug01G0150600.1 Rorug01G0150700.1 Rorug01G0150800.1 Rorug01G0150900.1 Rorug01G0151000.1 Rorug01G0151100.1 Rorug01G0151200.1 Rorug01G0151300.1 Rorug01G0151400.1 Rorug02G0399500 Rorug02G0399600 Rorug02G0399700 Rorug02G0399800 Rorug02G0399800 Rorug02G0399900
rosa_samantha Rh1AG165800 Rh1AG165900 Rh1BG132300 Rh1BG132400 Rh1CG154400 Rh1CG154500 Rh1DG167200 Rh1DG167300 Rh2AG456600 Rh2AG456700 Rh2BG469100 Rh2CG444100 Rh2CG444200 Rh2DG478400 Rh2DG478500
rosa_wichuraiana Rw1G013810 Rw1G013820 Rw1G013860 Rw2G037370 Rw2G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 26
AciI CCGC 3 cut(s) 1017, 1079, 1314
AclI AACGTT 1 cut(s) 1186
AclWI GGATC 1 cut(s) 815
AcoI YGGCCR 1 cut(s) 1224
AcsI RAATTY 1 cut(s) 212
AcuI CTGAAG 1 cut(s) 644
AdeI CACNNNGTG 1 cut(s) 1346
AfaI GTAC 1 cut(s) 935
AfiI CCNNNNNNNGG 4 cut(s) 26, 695, 1108, 1245
AflII CTTAAG 1 cut(s) 406
AflIII ACRYGT 2 cut(s) 1252, 1410
AgsI TTSAA 8 cut(s) 123, 511, 589, 680, 877, 1169, 1373, 1406
AjnI CCWGG 4 cut(s) 453, 602, 694, 960
AjuI GAANNNNNNNTTGG 2 cut(s) 198, 230
AluBI AGCT 6 cut(s) 159, 260, 386, 1028, 1093, 1127
AluI AGCT 6 cut(s) 159, 260, 386, 1028, 1093, 1127
Alw21I GWGCWC 2 cut(s) 993, 1418
Alw44I GTGCAC 2 cut(s) 989, 1414
AlwI GGATC 1 cut(s) 815
AoxI GGCC 3 cut(s) 200, 579, 1224
ApaLI GTGCAC 2 cut(s) 989, 1414
ApeKI GCWGC 5 cut(s) 260, 383, 386, 1014, 1217
ApoI RAATTY 1 cut(s) 212
AspLEI GCGC 2 cut(s) 154, 460
AspS9I GGNCC 1 cut(s) 1076
AsuC2I CCSGG 1 cut(s) 174
AsuHPI GGTGA 1 cut(s) 1270
AvaII GGWCC 1 cut(s) 1076
AxyI CCTNAGG 1 cut(s) 1107
BaeGI GKGCMC 2 cut(s) 993, 1418
BalI TGGCCA 1 cut(s) 1226
BanII GRGCYC 1 cut(s) 703
BbsI GAAGAC 1 cut(s) 1413
Bbv12I GWGCWC 2 cut(s) 993, 1418
BbvI GCAGC 5 cut(s) 247, 373, 395, 1001, 1204
BccI CCATC 2 cut(s) 727, 1002
BcgI CGANNNNNNTGC 2 cut(s) 463, 497
BciT130I CCWGG 4 cut(s) 455, 604, 696, 962
BclI TGATCA 1 cut(s) 369
BcnI CCSGG 1 cut(s) 174
BfaI CTAG 2 cut(s) 1280, 1343
BfoI RGCGCY 1 cut(s) 461
BfrI CTTAAG 1 cut(s) 406
BisI GCNGC 7 cut(s) 261, 384, 387, 1015, 1018, 1218, 1314
BlpI GCTNAGC 1 cut(s) 155
BlsI GCNGC 7 cut(s) 262, 385, 388, 1016, 1019, 1219, 1315
Bme1390I CCNGG 5 cut(s) 174, 455, 604, 696, 962
Bme18I GGWCC 1 cut(s) 1076
BmgT120I GGNCC 1 cut(s) 1076
BmiI GGNNCC 1 cut(s) 1077
BmrFI CCNGG 5 cut(s) 174, 455, 604, 696, 962
BmsI GCATC 4 cut(s) 106, 427, 465, 1160
BpiI GAAGAC 1 cut(s) 1413
BpmI CTGGAG 1 cut(s) 1109
Bpu1102I GCTNAGC 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 174
BsaJI CCNNGG 4 cut(s) 20, 695, 894, 960
Bsc4I CCNNNNNNNGG 4 cut(s) 26, 695, 1108, 1245
Bse1I ACTGG 2 cut(s) 533, 1193
Bse21I CCTNAGG 1 cut(s) 1107
BseBI CCWGG 4 cut(s) 455, 604, 696, 962
BseDI CCNNGG 4 cut(s) 20, 695, 894, 960
BseGI GGATG 4 cut(s) 418, 537, 956, 1151
BseLI CCNNNNNNNGG 4 cut(s) 26, 695, 1108, 1245
BseMII CTCAG 1 cut(s) 1121
BseNI ACTGG 2 cut(s) 533, 1193
BseRI GAGGAG 2 cut(s) 294, 1169
BseSI GKGCMC 2 cut(s) 993, 1418
BseXI GCAGC 5 cut(s) 247, 373, 395, 1001, 1204
BseYI CCCAGC 1 cut(s) 1093
Bsh1285I CGRYCG 1 cut(s) 173
BshFI GGCC 3 cut(s) 202, 581, 1226
BsiEI CGRYCG 1 cut(s) 173
BsiHKAI GWGCWC 2 cut(s) 993, 1418
BsiSI CCGG 1 cut(s) 173
BslFI GGGAC 2 cut(s) 283, 1085
BslI CCNNNNNNNGG 4 cut(s) 26, 695, 1108, 1245
BsmFI GGGAC 2 cut(s) 283, 1085
BsnI GGCC 3 cut(s) 202, 581, 1226
Bsp1286I GDGCHC 3 cut(s) 703, 993, 1418
Bsp143I GATC 3 cut(s) 369, 807, 828
Bsp1720I GCTNAGC 1 cut(s) 155
Bsp19I CCATGG 1 cut(s) 20
BspACI CCGC 3 cut(s) 1017, 1079, 1314
BspANI GGCC 3 cut(s) 202, 581, 1226
BspCNI CTCAG 1 cut(s) 1120
BspLI GGNNCC 1 cut(s) 1077
BspPI GGATC 1 cut(s) 815
BspTI CTTAAG 1 cut(s) 406
BsrI ACTGG 2 cut(s) 533, 1193
BssECI CCNNGG 4 cut(s) 20, 695, 894, 960
BssMI GATC 3 cut(s) 369, 807, 828
BssT1I CCWWGG 1 cut(s) 20
Bst2UI CCWGG 4 cut(s) 455, 604, 696, 962
Bst4CI ACNGT 5 cut(s) 149, 274, 394, 541, 933
Bst6I CTCTTC 1 cut(s) 1368
BstAFI CTTAAG 1 cut(s) 406
BstC8I GCNNGC 1 cut(s) 1228
BstDEI CTNAG 5 cut(s) 155, 562, 576, 834, 1107
BstDSI CCRYGG 2 cut(s) 20, 894
BstF5I GGATG 4 cut(s) 418, 537, 956, 1151
BstH2I RGCGCY 1 cut(s) 461
BstHHI GCGC 2 cut(s) 154, 460
BstKTI GATC 3 cut(s) 372, 810, 831
BstMBI GATC 3 cut(s) 369, 807, 828
BstMCI CGRYCG 1 cut(s) 173
BstMWI GCNNNNNNNGC 3 cut(s) 905, 1133, 1223
BstNI CCWGG 4 cut(s) 455, 604, 696, 962
BstNSI RCATGY 2 cut(s) 1256, 1414
BstSCI CCNGG 5 cut(s) 172, 453, 602, 694, 960
BstSLI GKGCMC 2 cut(s) 993, 1418
BstV1I GCAGC 5 cut(s) 247, 373, 395, 1001, 1204
BstV2I GAAGAC 1 cut(s) 1413
BstX2I RGATCY 1 cut(s) 807
BstYI RGATCY 1 cut(s) 807
Bsu36I CCTNAGG 1 cut(s) 1107
BsuRI GGCC 3 cut(s) 202, 581, 1226
BtgI CCRYGG 2 cut(s) 20, 894
BtsCI GGATG 4 cut(s) 418, 537, 956, 1151
BtsIMutI CAGTG 3 cut(s) 154, 546, 1336
Cac8I GCNNGC 1 cut(s) 1228
CfoI GCGC 2 cut(s) 154, 460
Cfr13I GGNCC 1 cut(s) 1076
CseI GACGC 1 cut(s) 1278
Csp6I GTAC 1 cut(s) 934
CviAII CATG 5 cut(s) 21, 883, 1138, 1253, 1411
CviQI GTAC 1 cut(s) 934
DdeI CTNAG 5 cut(s) 155, 562, 576, 834, 1107
DpnI GATC 3 cut(s) 371, 809, 830
DpnII GATC 3 cut(s) 369, 807, 828
DraI TTTAAA 1 cut(s) 144
DraIII CACNNNGTG 1 cut(s) 1346
EaeI YGGCCR 1 cut(s) 1224
Eam1104I CTCTTC 1 cut(s) 1368
EarI CTCTTC 1 cut(s) 1368
Eco130I CCWWGG 1 cut(s) 20
Eco147I AGGCCT 1 cut(s) 581
Eco24I GRGCYC 1 cut(s) 703
Eco47I GGWCC 1 cut(s) 1076
Eco57I CTGAAG 1 cut(s) 644
Eco81I CCTNAGG 1 cut(s) 1107
EcoRII CCWGG 4 cut(s) 453, 602, 694, 960
EcoT14I CCWWGG 1 cut(s) 20
EcoT38I GRGCYC 1 cut(s) 703
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 5 cut(s) 24, 886, 1141, 1256, 1414
FalI AAGNNNNNCTT 2 cut(s) 569, 601
FaqI GGGAC 2 cut(s) 283, 1085
FatI CATG 5 cut(s) 20, 882, 1137, 1252, 1410
FbaI TGATCA 1 cut(s) 369
Fnu4HI GCNGC 7 cut(s) 261, 384, 387, 1015, 1018, 1218, 1314
FokI GGATG 4 cut(s) 405, 544, 943, 1138
FriOI GRGCYC 1 cut(s) 703
Fsp4HI GCNGC 7 cut(s) 261, 384, 387, 1015, 1018, 1218, 1314
FspBI CTAG 2 cut(s) 1280, 1343
GlaI GCGC 2 cut(s) 153, 459
GluI GCNGC 7 cut(s) 261, 384, 387, 1015, 1018, 1218, 1314
GsaI CCCAGC 1 cut(s) 1097
GsuI CTGGAG 1 cut(s) 1109
HaeII RGCGCY 1 cut(s) 461
HaeIII GGCC 3 cut(s) 202, 581, 1226
HapII CCGG 1 cut(s) 173
HgaI GACGC 1 cut(s) 1278
HhaI GCGC 2 cut(s) 154, 460
Hin1II CATG 5 cut(s) 24, 886, 1141, 1256, 1414
Hin6I GCGC 2 cut(s) 152, 458
HinP1I GCGC 2 cut(s) 152, 458
HindIII AAGCTT 1 cut(s) 157
HinfI GANTC 4 cut(s) 249, 599, 734, 1098
HpaII CCGG 1 cut(s) 173
HphI GGTGA 1 cut(s) 1270
Hpy166II GTNNAC 3 cut(s) 92, 991, 1416
Hpy188I TCNGA 1 cut(s) 110
Hpy188III TCNNGA 3 cut(s) 723, 805, 1088
Hpy8I GTNNAC 3 cut(s) 92, 991, 1416
HpyAV CCTTC 3 cut(s) 592, 622, 772
HpyCH4III ACNGT 5 cut(s) 149, 274, 394, 541, 933
HpyCH4IV ACGT 1 cut(s) 1186
HpyCH4V TGCA 8 cut(s) 389, 649, 826, 886, 991, 1151, 1334, 1416
HpyF10VI GCNNNNNNNGC 3 cut(s) 905, 1133, 1223
HpyF3I CTNAG 5 cut(s) 155, 562, 576, 834, 1107
HpySE526I ACGT 1 cut(s) 1186
Hsp92II CATG 5 cut(s) 24, 886, 1141, 1256, 1414
HspAI GCGC 2 cut(s) 152, 458
Ksp22I TGATCA 1 cut(s) 369
Kzo9I GATC 3 cut(s) 369, 807, 828
LmnI GCTCC 4 cut(s) 257, 380, 905, 1090
Lsp1109I GCAGC 5 cut(s) 247, 373, 395, 1001, 1204
LweI GCATC 4 cut(s) 106, 427, 465, 1160
MaeI CTAG 2 cut(s) 1280, 1343
MaeII ACGT 1 cut(s) 1186
MalI GATC 3 cut(s) 371, 809, 830
MboI GATC 3 cut(s) 369, 807, 828
MboII GAAGA 6 cut(s) 577, 637, 683, 1294, 1385, 1418
MflI RGATCY 1 cut(s) 807
MhlI GDGCHC 3 cut(s) 703, 993, 1418
MlsI TGGCCA 1 cut(s) 1226
MluCI AATT 5 cut(s) 212, 225, 243, 979, 1296
MluNI TGGCCA 1 cut(s) 1226
MlyI GAGTC 3 cut(s) 608, 743, 1107
MmeI TCCRAC 3 cut(s) 133, 200, 493
Mox20I TGGCCA 1 cut(s) 1226
MscI TGGCCA 1 cut(s) 1226
MseI TTAA 7 cut(s) 143, 407, 413, 429, 812, 1272, 1420
Msp20I TGGCCA 1 cut(s) 1226
MspA1I CMGCKG 1 cut(s) 386
MspCI CTTAAG 1 cut(s) 406
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 5 cut(s) 174, 455, 604, 696, 962
MvaI CCWGG 4 cut(s) 455, 604, 696, 962
MwoI GCNNNNNNNGC 3 cut(s) 905, 1133, 1223
NciI CCSGG 1 cut(s) 174
NcoI CCATGG 1 cut(s) 20
NdeII GATC 3 cut(s) 369, 807, 828
NlaIII CATG 5 cut(s) 24, 886, 1141, 1256, 1414
NlaIV GGNNCC 1 cut(s) 1077
NspI RCATGY 2 cut(s) 1256, 1414
PceI AGGCCT 1 cut(s) 581
PciI ACATGT 2 cut(s) 1252, 1410
PfeI GAWTC 1 cut(s) 249
PflFI GACNNNGTC 1 cut(s) 174
PflMI CCANNNNNTGG 1 cut(s) 26
PfoI TCCNGGA 1 cut(s) 602
PkrI GCNGC 7 cut(s) 262, 385, 388, 1016, 1019, 1219, 1315
PleI GAGTC 3 cut(s) 607, 742, 1106
PpsI GAGTC 3 cut(s) 607, 742, 1106
PscI ACATGT 2 cut(s) 1252, 1410
Psp1406I AACGTT 1 cut(s) 1186
Psp6I CCWGG 4 cut(s) 453, 602, 694, 960
PspFI CCCAGC 1 cut(s) 1093
PspGI CCWGG 4 cut(s) 453, 602, 694, 960
PspN4I GGNNCC 1 cut(s) 1077
PspPI GGNCC 1 cut(s) 1076
PsuI RGATCY 1 cut(s) 807
PsyI GACNNNGTC 1 cut(s) 174
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 1 cut(s) 935
RsaNI GTAC 1 cut(s) 934
SaqAI TTAA 7 cut(s) 143, 407, 413, 429, 812, 1272, 1420
SatI GCNGC 7 cut(s) 261, 384, 387, 1015, 1018, 1218, 1314
Sau3AI GATC 3 cut(s) 369, 807, 828
Sau96I GGNCC 1 cut(s) 1076
SchI GAGTC 3 cut(s) 608, 743, 1107
ScrFI CCNGG 5 cut(s) 174, 455, 604, 696, 962
SduI GDGCHC 3 cut(s) 703, 993, 1418
SfaNI GCATC 4 cut(s) 106, 427, 465, 1160
SinI GGWCC 1 cut(s) 1076
SmlI CTYRAG 2 cut(s) 6, 406
SmoI CTYRAG 2 cut(s) 6, 406
Sse9I AATT 5 cut(s) 212, 225, 243, 979, 1296
SseBI AGGCCT 1 cut(s) 581
SsiI CCGC 3 cut(s) 1017, 1079, 1314
SspI AATATT 2 cut(s) 519, 769
SspMI CTAG 2 cut(s) 1280, 1343
StuI AGGCCT 1 cut(s) 581
StyD4I CCNGG 5 cut(s) 172, 453, 602, 694, 960
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 5 cut(s) 149, 274, 394, 541, 933
TaiI ACGT 1 cut(s) 1189
TaqI TCGA 5 cut(s) 178, 333, 444, 703, 1115
TasI AATT 5 cut(s) 212, 225, 243, 979, 1296
TatI WGTACW 1 cut(s) 933
TauI GCSGC 2 cut(s) 1020, 1316
TfiI GAWTC 1 cut(s) 249
Tru1I TTAA 7 cut(s) 143, 407, 413, 429, 812, 1272, 1420
Tru9I TTAA 7 cut(s) 143, 407, 413, 429, 812, 1272, 1420
TscAI CASTG 3 cut(s) 154, 546, 1336
TseI GCWGC 5 cut(s) 260, 383, 386, 1014, 1217
TspDTI ATGAA 5 cut(s) 241, 903, 945, 1057, 1294
TspRI CASTG 3 cut(s) 154, 546, 1336
Tth111I GACNNNGTC 1 cut(s) 174
Van91I CCANNNNNTGG 1 cut(s) 26
Vha464I CTTAAG 1 cut(s) 406
VneI GTGCAC 2 cut(s) 989, 1414
VpaK11BI GGWCC 1 cut(s) 1076
XapI RAATTY 1 cut(s) 212
XceI RCATGY 2 cut(s) 1256, 1414
XspI CTAG 2 cut(s) 1280, 1343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.