Prupe.2G100300_v2.0.a1

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000623
Physical Location & Seq
Reverse (-)
15605934 .. 15612953
7020 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G100300.1

Sequence Viewer

Length: 444 bp
ATGGGAGAACCTCAAATGGAAGATCTATCCACATCAAATCCCGTGATTGAACTGGAAGGGGATGAATTTTGGCCACTTTCTGGGAAACCCTTTTTCGATGTGGTTCTGACGAAAACAAGTATCAAACCCATGTGCCAACTGGTGGTCCCAGGCAAATTTAGTGCAACACTACCTTCCTGTTCAATCCCTACGGTTCTCACATTTCGGGGCAAGAACTGGGAGATGACATATCATGGGTCATCCAATTATAAAAGGCTTGATAACTGGAAAGCGTTTGCCATTGACAACAATTTGAAGGTTGGAGATGCATGTGTGTTTGAACAACTGGAGTGCAGCAGTACTAGGCTAGTATTCAGAGTCCAAATTCTCAGAGGTGACATCCCATCAGAATTTCTAGACAAGCTTGATGGTGATAATGTAGATGCACCAATTGTTCTCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

148

Amino Acids

16.48

Weight (kDa)

4.71

Isoelectric Point (pI)

32.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35581 FvH4_6g35581 FvH4_6g35582 FvH4_7g07710 FvH4_7g07720
malus_domestica MD02G1233300.v1.1 MD07G1080300.v1.1
prunus_persica Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G104300_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1
pyrus_communis pycom02g20150 pycom07g06390
rosa_chinensis RchiOBHm_Chr1g0342371 RchiOBHm_Chr1g0342381 RchiOBHm_Chr1g0342401 RchiOBHm_Chr1g0342491 RchiOBHm_Chr1g0342511 RchiOBHm_Chr2g0147401 RchiOBHm_Chr2g0147411
rosa_laevigata RLG00000020253 RLG00000020259 RLG00000029157 RLG00000029158
rosa_multiflora Rmu_sc0000979.1_g000010 Rmu_sc0001159.1_g000034 Rmu_sc0001159.1_g000035 Rmu_sc0005388.1_g000001 Rmu_sc0009535.1_g000001 Rmu_sc0009535.1_g000003 Rmu_sc0011976.1_g000004 Rmu_sc0011976.1_g000005 Rmu_sc0027133.1_g000002
rosa_roxburghii Rroxscaffold_2G00099550 Rroxscaffold_2G00099560 Rroxscaffold_4G00296180 Rroxscaffold_4G00312990 Rroxscaffold_4G00313010 Rroxscaffold_4G00313030 Rroxscaffold_4G00313060
rosa_rugosa Rorug01G0150600.1 Rorug01G0150700.1 Rorug01G0150800.1 Rorug01G0150900.1 Rorug01G0151000.1 Rorug01G0151100.1 Rorug01G0151200.1 Rorug01G0151300.1 Rorug01G0151400.1 Rorug02G0399500 Rorug02G0399600 Rorug02G0399700 Rorug02G0399800 Rorug02G0399800 Rorug02G0399900
rosa_samantha Rh1AG165800 Rh1AG165900 Rh1BG132300 Rh1BG132400 Rh1CG154400 Rh1CG154500 Rh1DG167200 Rh1DG167300 Rh2AG456600 Rh2AG456700 Rh2BG469100 Rh2CG444100 Rh2CG444200 Rh2DG478400 Rh2DG478500
rosa_wichuraiana Rw1G013810 Rw1G013820 Rw1G013860 Rw2G037370 Rw2G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 249
AccB7I CCANNNNNTGG 2 cut(s) 80, 142
AcoI YGGCCR 1 cut(s) 71
AcsI RAATTY 4 cut(s) 65, 155, 363, 389
AfaI GTAC 1 cut(s) 340
AfiI CCNNNNNNNGG 2 cut(s) 80, 142
AgsI TTSAA 4 cut(s) 50, 183, 295, 320
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 1 cut(s) 403
AluI AGCT 1 cut(s) 403
AoxI GGCC 1 cut(s) 71
ApeKI GCWGC 1 cut(s) 333
ApoI RAATTY 4 cut(s) 65, 155, 363, 389
AspS9I GGNCC 1 cut(s) 145
AsuHPI GGTGA 2 cut(s) 386, 422
AvaII GGWCC 1 cut(s) 145
BalI TGGCCA 1 cut(s) 73
BbvI GCAGC 1 cut(s) 345
BccI CCATC 2 cut(s) 391, 401
BciT130I CCWGG 1 cut(s) 150
BfaI CTAG 3 cut(s) 342, 347, 395
BglII AGATCT 1 cut(s) 22
BisI GCNGC 1 cut(s) 334
BlsI GCNGC 1 cut(s) 335
BmcAI AGTACT 1 cut(s) 340
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 150
BmrI ACTGGG 1 cut(s) 226
BmsI GCATC 2 cut(s) 295, 412
BmuI ACTGGG 1 cut(s) 226
BpmI CTGGAG 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 142
Bse1I ACTGG 5 cut(s) 57, 144, 221, 269, 330
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 148
BseGI GGATG 3 cut(s) 67, 239, 378
BseLI CCNNNNNNNGG 2 cut(s) 80, 142
BseMII CTCAG 1 cut(s) 382
BseNI ACTGG 5 cut(s) 57, 144, 221, 269, 330
BseXI GCAGC 1 cut(s) 345
BsgI GTGCAG 1 cut(s) 352
BshFI GGCC 1 cut(s) 73
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 80, 142
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 1 cut(s) 73
Bsp143I GATC 1 cut(s) 22
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 381
BspLI GGNNCC 1 cut(s) 147
BsrI ACTGG 5 cut(s) 57, 144, 221, 269, 330
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 368
BstF5I GGATG 3 cut(s) 67, 239, 378
BstKTI GATC 1 cut(s) 25
BstMBI GATC 1 cut(s) 22
BstNI CCWGG 1 cut(s) 150
BstNSI RCATGY 1 cut(s) 312
BstSCI CCNGG 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BsuRI GGCC 1 cut(s) 73
BtsCI GGATG 3 cut(s) 67, 239, 378
Cfr13I GGNCC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 339
CviAII CATG 3 cut(s) 130, 233, 309
CviJI RGCY 4 cut(s) 73, 256, 346, 403
CviKI_1 RGCY 4 cut(s) 73, 256, 346, 403
CviQI GTAC 1 cut(s) 339
DdeI CTNAG 1 cut(s) 368
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 148
EcoT22I ATGCAT 1 cut(s) 310
FaeI CATG 3 cut(s) 133, 236, 312
FaiI YATR 5 cut(s) 131, 229, 234, 249, 310
FaqI GGGAC 1 cut(s) 131
FatI CATG 3 cut(s) 129, 232, 308
Fnu4HI GCNGC 1 cut(s) 334
FokI GGATG 3 cut(s) 74, 226, 365
Fsp4HI GCNGC 1 cut(s) 334
FspBI CTAG 3 cut(s) 342, 347, 395
GluI GCNGC 1 cut(s) 334
GsuI CTGGAG 1 cut(s) 347
HaeIII GGCC 1 cut(s) 73
Hin1II CATG 3 cut(s) 133, 236, 312
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 1 cut(s) 357
HphI GGTGA 2 cut(s) 386, 422
Hpy188I TCNGA 4 cut(s) 108, 356, 371, 388
Hpy188III TCNNGA 2 cut(s) 395, 437
HpyAV CCTTC 3 cut(s) 50, 183, 289
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4V TGCA 4 cut(s) 164, 308, 333, 425
HpyF3I CTNAG 1 cut(s) 368
Hsp92II CATG 3 cut(s) 133, 236, 312
Kzo9I GATC 1 cut(s) 22
LpnPI CCDG 9 cut(s) 38, 66, 125, 135, 162, 190, 202, 250, 311
Lsp1109I GCAGC 1 cut(s) 345
LweI GCATC 2 cut(s) 295, 412
MaeI CTAG 3 cut(s) 342, 347, 395
MaeIII GTNAC 1 cut(s) 374
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MboII GAAGA 1 cut(s) 32
MfeI CAATTG 1 cut(s) 429
MflI RGATCY 1 cut(s) 22
MlsI TGGCCA 1 cut(s) 73
MluCI AATT 7 cut(s) 65, 155, 244, 289, 363, 389, 429
MluNI TGGCCA 1 cut(s) 73
MlyI GAGTC 1 cut(s) 366
MmeI TCCRAC 1 cut(s) 280
MnlI CCTC 2 cut(s) 21, 365
Mox20I TGGCCA 1 cut(s) 73
Mph1103I ATGCAT 1 cut(s) 310
MscI TGGCCA 1 cut(s) 73
Msp20I TGGCCA 1 cut(s) 73
MspR9I CCNGG 1 cut(s) 150
MunI CAATTG 1 cut(s) 429
MvaI CCWGG 1 cut(s) 150
NdeII GATC 1 cut(s) 22
NlaIII CATG 3 cut(s) 133, 236, 312
NlaIV GGNNCC 1 cut(s) 147
NmuCI GTSAC 1 cut(s) 374
NsiI ATGCAT 1 cut(s) 310
NspI RCATGY 1 cut(s) 312
PflMI CCANNNNNTGG 2 cut(s) 80, 142
PkrI GCNGC 1 cut(s) 335
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
PsiI TTATAA 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 145
PsuI RGATCY 1 cut(s) 22
RsaI GTAC 1 cut(s) 340
RsaNI GTAC 1 cut(s) 339
SatI GCNGC 1 cut(s) 334
Sau3AI GATC 1 cut(s) 22
Sau96I GGNCC 1 cut(s) 145
ScaI AGTACT 1 cut(s) 340
SchI GAGTC 1 cut(s) 366
ScrFI CCNGG 1 cut(s) 150
SetI ASST 5 cut(s) 13, 175, 300, 376, 405
SfaNI GCATC 2 cut(s) 295, 412
SinI GGWCC 1 cut(s) 145
Sse9I AATT 7 cut(s) 65, 155, 244, 289, 363, 389, 429
SspMI CTAG 3 cut(s) 342, 347, 395
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 193
TaqI TCGA 2 cut(s) 96, 438
TasI AATT 7 cut(s) 65, 155, 244, 289, 363, 389, 429
TatI WGTACW 1 cut(s) 338
TseFI GTSAC 1 cut(s) 374
TseI GCWGC 1 cut(s) 333
Tsp45I GTSAC 1 cut(s) 374
TspDTI ATGAA 1 cut(s) 78
Van91I CCANNNNNTGG 2 cut(s) 80, 142
VpaK11BI GGWCC 1 cut(s) 145
XapI RAATTY 4 cut(s) 65, 155, 363, 389
XbaI TCTAGA 1 cut(s) 394
XceI RCATGY 1 cut(s) 312
XcmI CCANNNNNNNNNTGG 1 cut(s) 136
XspI CTAG 3 cut(s) 342, 347, 395
ZrmI AGTACT 1 cut(s) 340
Zsp2I ATGCAT 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.