Rorug02G0399700

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000623
Physical Location & Seq
Reverse (-)
51068865 .. 51069617
753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0399700.1

Sequence Viewer

Length: 753 bp
ATGGATGCCCCGCTACAAGAGGTTCACCTGAACTTCGATCTCTTCAGAAAGGCATTTGAACAGAAAGATTTCAATGCATGCACCGAGCTCCTCCCGAAACTCAAGACCATGATAGCACAAATGAGAAGCCTCCCGCCGATGTATGAAGCTACACCTAATGCGGTGGGAGAACTAGCAGTAGCAAGGGACATATATGAGCATGCTGTTGTTCTTAGCTTGAAGACAGAGGATGAGGAAGCATTCGAGAGGGATTTTCTTCAGTTGAAGCAGTACTATTACGCCGGTTACGGTCGCCTTCCACCGTCCCCTCAAGAGGACCTGATTTTAGGTCTCAATCTGCTGAGGCTCCTTGTGCAGAACAAAACTGATGAGTTCCACACCGAGCTGGAACTGCTTGCATGCCTGTCACCCACTGCATTGGACAACCCTTGCATCAAGCACGCGGTGGAGTTGAAGCAGTCCTTAATGGAGGAGGGAGGAGCTTACATAAGTGTGTTGCTTGCTCGGCAGACAATGCCAGATGACATCAGTACTTACACTTATGCAAGATATTTCATGGATCTTCTTGAAAAAACTATCAGAGATCAGGAGGCGGACCCTCCCGAGGGGGATGTAAAATATGATGCCGCATTTTTCGAGAAGGCAAAGGAGTCTGCACCTTGCAAGGAGATACCTTCTCTGCAGTTCATCAATCAAATGCTCAGTTGTGCAACAAAATTGGGTCAGATTGATGGTTCAGAGAATGATAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

250

Amino Acids

28.36

Weight (kDa)

4.59

Isoelectric Point (pI)

52.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CSN8_PSD8_EIF3K PF10075 105 - 196 5.3e-07 CSN8/PSMD8/EIF3K family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35581 FvH4_6g35581 FvH4_6g35582 FvH4_7g07710 FvH4_7g07720
malus_domestica MD02G1233300.v1.1 MD07G1080300.v1.1
prunus_persica Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G104300_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1
pyrus_communis pycom02g20150 pycom07g06390
rosa_chinensis RchiOBHm_Chr1g0342371 RchiOBHm_Chr1g0342381 RchiOBHm_Chr1g0342401 RchiOBHm_Chr1g0342491 RchiOBHm_Chr1g0342511 RchiOBHm_Chr2g0147401 RchiOBHm_Chr2g0147411
rosa_laevigata RLG00000020253 RLG00000020259 RLG00000029157 RLG00000029158
rosa_multiflora Rmu_sc0000979.1_g000010 Rmu_sc0001159.1_g000034 Rmu_sc0001159.1_g000035 Rmu_sc0005388.1_g000001 Rmu_sc0009535.1_g000001 Rmu_sc0009535.1_g000003 Rmu_sc0011976.1_g000004 Rmu_sc0011976.1_g000005 Rmu_sc0027133.1_g000002
rosa_roxburghii Rroxscaffold_2G00099550 Rroxscaffold_2G00099560 Rroxscaffold_4G00296180 Rroxscaffold_4G00312990 Rroxscaffold_4G00313010 Rroxscaffold_4G00313030 Rroxscaffold_4G00313060
rosa_rugosa Rorug01G0150600.1 Rorug01G0150700.1 Rorug01G0150800.1 Rorug01G0150900.1 Rorug01G0151000.1 Rorug01G0151100.1 Rorug01G0151200.1 Rorug01G0151300.1 Rorug01G0151400.1 Rorug02G0399500 Rorug02G0399600 Rorug02G0399700 Rorug02G0399800 Rorug02G0399800 Rorug02G0399900
rosa_samantha Rh1AG165800 Rh1AG165900 Rh1BG132300 Rh1BG132400 Rh1CG154400 Rh1CG154500 Rh1DG167200 Rh1DG167300 Rh2AG456600 Rh2AG456700 Rh2BG469100 Rh2CG444100 Rh2CG444200 Rh2DG478400 Rh2DG478500
rosa_wichuraiana Rw1G013810 Rw1G013820 Rw1G013860 Rw2G037370 Rw2G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 443
AciI CCGC 6 cut(s) 11, 134, 161, 443, 593, 627
AclWI GGATC 1 cut(s) 567
AcuI CTGAAG 2 cut(s) 28, 242
AdeI CACNNNGTG 1 cut(s) 445
AfaI GTAC 2 cut(s) 272, 532
AfiI CCNNNNNNNGG 3 cut(s) 313, 604, 605
AgsI TTSAA 6 cut(s) 59, 73, 220, 265, 454, 569
AluBI AGCT 6 cut(s) 88, 149, 216, 385, 482, 750
AluI AGCT 6 cut(s) 88, 149, 216, 385, 482, 750
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 1 cut(s) 335
AlwI GGATC 1 cut(s) 567
Ama87I CYCGRG 1 cut(s) 602
Asp700I GAANNNNTTC 1 cut(s) 68
AspS9I GGNCC 2 cut(s) 316, 595
AsuHPI GGTGA 2 cut(s) 17, 399
AvaI CYCGRG 1 cut(s) 602
AvaII GGWCC 2 cut(s) 316, 595
BanII GRGCYC 1 cut(s) 90
BbsI GAAGAC 1 cut(s) 227
Bbv12I GWGCWC 1 cut(s) 90
BbvCI CCTCAGC 1 cut(s) 341
BccI CCATC 1 cut(s) 725
BcoDI GTCTC 1 cut(s) 335
BfaI CTAG 2 cut(s) 173, 751
BfmI CTRYAG 1 cut(s) 680
BisI GCNGC 1 cut(s) 627
BlsI GCNGC 1 cut(s) 628
BmcAI AGTACT 2 cut(s) 272, 532
Bme18I GGWCC 2 cut(s) 316, 595
BmeT110I CYCGRG 1 cut(s) 602
BmgT120I GGNCC 2 cut(s) 316, 595
BmiI GGNNCC 2 cut(s) 347, 597
BmsI GCATC 2 cut(s) 441, 613
BpiI GAAGAC 1 cut(s) 227
Bpu10I CCTNAGC 1 cut(s) 341
BpuEI CTTGAG 2 cut(s) 86, 294
BsaI GGTCTC 1 cut(s) 335
BsaJI CCNNGG 1 cut(s) 603
Bsc4I CCNNNNNNNGG 3 cut(s) 313, 604, 605
Bse118I RCCGGY 1 cut(s) 281
BseDI CCNNGG 1 cut(s) 603
BseGI GGATG 3 cut(s) 10, 235, 616
BseLI CCNNNNNNNGG 3 cut(s) 313, 604, 605
BseMII CTCAG 2 cut(s) 332, 715
BseRI GAGGAG 3 cut(s) 80, 485, 492
BsgI GTGCAG 2 cut(s) 374, 639
Bsh1236I CGCG 1 cut(s) 443
Bsh1285I CGRYCG 1 cut(s) 292
BsiEI CGRYCG 1 cut(s) 292
BsiHKAI GWGCWC 1 cut(s) 90
BsiHKCI CYCGRG 1 cut(s) 602
BsiSI CCGG 1 cut(s) 282
BslFI GGGAC 2 cut(s) 200, 289
BslI CCNNNNNNNGG 3 cut(s) 313, 604, 605
BsmAI GTCTC 1 cut(s) 335
BsmFI GGGAC 2 cut(s) 200, 289
BsmI GAATGC 1 cut(s) 239
Bso31I GGTCTC 1 cut(s) 335
BsoBI CYCGRG 1 cut(s) 602
Bsp1286I GDGCHC 1 cut(s) 90
Bsp143I GATC 3 cut(s) 37, 559, 583
BspACI CCGC 6 cut(s) 11, 134, 161, 443, 593, 627
BspCNI CTCAG 2 cut(s) 333, 714
BspFNI CGCG 1 cut(s) 443
BspLI GGNNCC 2 cut(s) 347, 597
BspMAI CTGCAG 1 cut(s) 684
BspPI GGATC 1 cut(s) 567
BspTNI GGTCTC 1 cut(s) 335
BsrFI RCCGGY 1 cut(s) 281
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 603
BssMI GATC 3 cut(s) 37, 559, 583
Bst4CI ACNGT 2 cut(s) 290, 303
Bst6I CTCTTC 1 cut(s) 47
BstAPI GCANNNNNTGC 1 cut(s) 514
BstC8I GCNNGC 6 cut(s) 79, 201, 396, 400, 441, 501
BstDEI CTNAG 3 cut(s) 212, 341, 701
BstF5I GGATG 3 cut(s) 10, 235, 616
BstFNI CGCG 1 cut(s) 443
BstKTI GATC 3 cut(s) 40, 562, 586
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 3 cut(s) 37, 559, 583
BstMCI CGRYCG 1 cut(s) 292
BstMWI GCNNNNNNNGC 4 cut(s) 352, 391, 505, 514
BstNSI RCATGY 3 cut(s) 81, 203, 402
BstSFI CTRYAG 1 cut(s) 680
BstUI CGCG 1 cut(s) 443
BstV2I GAAGAC 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 559
BstXI CCANNNNNNTGG 1 cut(s) 418
BstYI RGATCY 1 cut(s) 559
BtsCI GGATG 3 cut(s) 10, 235, 616
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 1 cut(s) 411
Cac8I GCNNGC 6 cut(s) 79, 201, 396, 400, 441, 501
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 2 cut(s) 316, 595
Csp6I GTAC 2 cut(s) 271, 531
CviAII CATG 5 cut(s) 78, 109, 200, 399, 556
CviJI RGCY 8 cut(s) 88, 129, 149, 216, 346, 385, 482, 750
CviKI_1 RGCY 8 cut(s) 88, 129, 149, 216, 346, 385, 482, 750
CviQI GTAC 2 cut(s) 271, 531
DdeI CTNAG 3 cut(s) 212, 341, 701
DpnI GATC 3 cut(s) 39, 561, 585
DpnII GATC 3 cut(s) 37, 559, 583
DraIII CACNNNGTG 1 cut(s) 445
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
EciI GGCGGA 1 cut(s) 608
Ecl136II GAGCTC 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 90
Eco31I GGTCTC 1 cut(s) 335
Eco47I GGWCC 2 cut(s) 316, 595
Eco53kI GAGCTC 1 cut(s) 88
Eco57I CTGAAG 2 cut(s) 28, 242
Eco88I CYCGRG 1 cut(s) 602
EcoICRI GAGCTC 1 cut(s) 88
EcoO109I RGGNCCY 1 cut(s) 316
EcoT22I ATGCAT 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 90
FaeI CATG 5 cut(s) 81, 112, 203, 402, 559
FalI AAGNNNNNCTT 2 cut(s) 446, 478
FaqI GGGAC 2 cut(s) 200, 289
FatI CATG 5 cut(s) 77, 108, 199, 398, 555
FauI CCCGC 2 cut(s) 18, 141
Fnu4HI GCNGC 1 cut(s) 627
FokI GGATG 3 cut(s) 17, 242, 623
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 627
FspBI CTAG 2 cut(s) 173, 751
GluI GCNGC 1 cut(s) 627
HapII CCGG 1 cut(s) 282
Hin1II CATG 5 cut(s) 81, 112, 203, 402, 559
HinfI GANTC 1 cut(s) 650
HpaII CCGG 1 cut(s) 282
HphI GGTGA 2 cut(s) 17, 399
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 4 cut(s) 47, 581, 726, 739
Hpy188III TCNNGA 8 cut(s) 94, 103, 244, 311, 566, 587, 602, 637
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 3 cut(s) 305, 634, 684
HpyCH4III ACNGT 2 cut(s) 290, 303
HpyF10VI GCNNNNNNNGC 4 cut(s) 352, 391, 505, 514
HpyF3I CTNAG 3 cut(s) 212, 341, 701
Hsp92II CATG 5 cut(s) 81, 112, 203, 402, 559
Kzo9I GATC 3 cut(s) 37, 559, 583
LmnI GCTCC 3 cut(s) 93, 351, 479
LpnPI CCDG 7 cut(s) 41, 295, 332, 371, 416, 531, 572
LweI GCATC 2 cut(s) 441, 613
MaeI CTAG 2 cut(s) 173, 751
MaeIII GTNAC 2 cut(s) 284, 405
MalI GATC 3 cut(s) 39, 561, 585
MboI GATC 3 cut(s) 37, 559, 583
MboII GAAGA 4 cut(s) 34, 232, 248, 554
MflI RGATCY 1 cut(s) 559
MhlI GDGCHC 1 cut(s) 90
MluCI AATT 1 cut(s) 716
MlyI GAGTC 1 cut(s) 659
Mph1103I ATGCAT 1 cut(s) 79
MroXI GAANNNNTTC 1 cut(s) 68
MseI TTAA 1 cut(s) 464
MslI CAYNNNNRTG 1 cut(s) 491
MspI CCGG 1 cut(s) 282
Mva1269I GAATGC 1 cut(s) 239
MvnI CGCG 1 cut(s) 443
MwoI GCNNNNNNNGC 4 cut(s) 352, 391, 505, 514
NdeII GATC 3 cut(s) 37, 559, 583
NlaIII CATG 5 cut(s) 81, 112, 203, 402, 559
NlaIV GGNNCC 2 cut(s) 347, 597
NmeAIII GCCGAG 1 cut(s) 484
NmuCI GTSAC 1 cut(s) 405
NsiI ATGCAT 1 cut(s) 79
NspI RCATGY 3 cut(s) 81, 203, 402
PaeI GCATGC 3 cut(s) 81, 203, 402
PctI GAATGC 1 cut(s) 239
PdmI GAANNNNTTC 1 cut(s) 68
PkrI GCNGC 1 cut(s) 628
PleI GAGTC 1 cut(s) 658
PpsI GAGTC 1 cut(s) 658
PpuMI RGGWCCY 1 cut(s) 316
Psp124BI GAGCTC 1 cut(s) 90
Psp5II RGGWCCY 1 cut(s) 316
PspN4I GGNNCC 2 cut(s) 347, 597
PspPI GGNCC 2 cut(s) 316, 595
PspPPI RGGWCCY 1 cut(s) 316
PstI CTGCAG 1 cut(s) 684
PsuI RGATCY 1 cut(s) 559
RsaI GTAC 2 cut(s) 272, 532
RsaNI GTAC 2 cut(s) 271, 531
RseI CAYNNNNRTG 1 cut(s) 491
SacI GAGCTC 1 cut(s) 90
SaqAI TTAA 1 cut(s) 464
SatI GCNGC 1 cut(s) 627
Sau3AI GATC 3 cut(s) 37, 559, 583
Sau96I GGNCC 2 cut(s) 316, 595
ScaI AGTACT 2 cut(s) 272, 532
SchI GAGTC 1 cut(s) 659
SduI GDGCHC 1 cut(s) 90
SfaNI GCATC 2 cut(s) 441, 613
SfcI CTRYAG 1 cut(s) 680
SinI GGWCC 2 cut(s) 316, 595
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 2 cut(s) 101, 309
SmoI CTYRAG 2 cut(s) 101, 309
SphI GCATGC 3 cut(s) 81, 203, 402
Sse9I AATT 1 cut(s) 716
SsiI CCGC 6 cut(s) 11, 134, 161, 443, 593, 627
SspMI CTAG 2 cut(s) 173, 751
SstI GAGCTC 1 cut(s) 90
TaaI ACNGT 2 cut(s) 290, 303
TaqI TCGA 3 cut(s) 36, 243, 636
TasI AATT 1 cut(s) 716
TatI WGTACW 2 cut(s) 270, 530
TauI GCSGC 1 cut(s) 629
Tru1I TTAA 1 cut(s) 464
Tru9I TTAA 1 cut(s) 464
TscAI CASTG 1 cut(s) 418
TseFI GTSAC 1 cut(s) 405
Tsp45I GTSAC 1 cut(s) 405
TspDTI ATGAA 3 cut(s) 159, 544, 676
TspRI CASTG 1 cut(s) 418
VpaK11BI GGWCC 2 cut(s) 316, 595
XceI RCATGY 3 cut(s) 81, 203, 402
XmnI GAANNNNTTC 1 cut(s) 68
XspI CTAG 2 cut(s) 173, 751
ZrmI AGTACT 2 cut(s) 272, 532
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.