Rorug02G0399900

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000623
Physical Location & Seq
Reverse (-)
51078968 .. 51079909
942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0399900.1

Sequence Viewer

Length: 294 bp
ATGTTGGAAGGCAAAGCTTTGATACAAGACACAGACATGCCAGTGAAGATGCAGATTCAAGCCATGGCTTCTGCTTCTCAAGCTCTGGATCTCTATGATGTCTTTGATTGCAGATCCATATCTGCCCACATTAAAAAGGAGTTTGATAAGAGATATGGATGTGGCTGGCAATGTGTGGTGGGTTCCAATTTTGGGTGCTTCTTCACTCACTCCAAAGGCACTTTCATCTACTTCACTCTTGAGACTCTCAGTTTCCTTATCTTTAGAGGTGTTTCTTCTTCTTCTTCTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

97

Amino Acids

10.83

Weight (kDa)

6.69

Isoelectric Point (pI)

40.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 5 - 89 9.4e-32 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35581 FvH4_6g35581 FvH4_6g35582 FvH4_7g07710 FvH4_7g07720
malus_domestica MD02G1233300.v1.1 MD07G1080300.v1.1
prunus_persica Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G104300_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1
pyrus_communis pycom02g20150 pycom07g06390
rosa_chinensis RchiOBHm_Chr1g0342371 RchiOBHm_Chr1g0342381 RchiOBHm_Chr1g0342401 RchiOBHm_Chr1g0342491 RchiOBHm_Chr1g0342511 RchiOBHm_Chr2g0147401 RchiOBHm_Chr2g0147411
rosa_laevigata RLG00000020253 RLG00000020259 RLG00000029157 RLG00000029158
rosa_multiflora Rmu_sc0000979.1_g000010 Rmu_sc0001159.1_g000034 Rmu_sc0001159.1_g000035 Rmu_sc0005388.1_g000001 Rmu_sc0009535.1_g000001 Rmu_sc0009535.1_g000003 Rmu_sc0011976.1_g000004 Rmu_sc0011976.1_g000005 Rmu_sc0027133.1_g000002
rosa_roxburghii Rroxscaffold_2G00099550 Rroxscaffold_2G00099560 Rroxscaffold_4G00296180 Rroxscaffold_4G00312990 Rroxscaffold_4G00313010 Rroxscaffold_4G00313030 Rroxscaffold_4G00313060
rosa_rugosa Rorug01G0150600.1 Rorug01G0150700.1 Rorug01G0150800.1 Rorug01G0150900.1 Rorug01G0151000.1 Rorug01G0151100.1 Rorug01G0151200.1 Rorug01G0151300.1 Rorug01G0151400.1 Rorug02G0399500 Rorug02G0399600 Rorug02G0399700 Rorug02G0399800 Rorug02G0399800 Rorug02G0399900
rosa_samantha Rh1AG165800 Rh1AG165900 Rh1BG132300 Rh1BG132400 Rh1CG154400 Rh1CG154500 Rh1DG167200 Rh1DG167300 Rh2AG456600 Rh2AG456700 Rh2BG469100 Rh2CG444100 Rh2CG444200 Rh2DG478400 Rh2DG478500
rosa_wichuraiana Rw1G013810 Rw1G013820 Rw1G013860 Rw2G037370 Rw2G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 96, 108
AfiI CCNNNNNNNGG 1 cut(s) 192
AgsI TTSAA 1 cut(s) 59
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
AluBI AGCT 2 cut(s) 17, 83
AluI AGCT 2 cut(s) 17, 83
Alw26I GTCTC 1 cut(s) 236
AlwI GGATC 2 cut(s) 96, 108
BcoDI GTCTC 1 cut(s) 236
BmiI GGNNCC 1 cut(s) 184
BmsI GCATC 1 cut(s) 39
BpuEI CTTGAG 2 cut(s) 63, 260
BsaBI GATNNNNATC 1 cut(s) 118
BsaJI CCNNGG 1 cut(s) 63
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse1I ACTGG 1 cut(s) 41
Bse3DI GCAATG 1 cut(s) 176
Bse8I GATNNNNATC 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 1 cut(s) 164
BseJI GATNNNNATC 1 cut(s) 118
BseLI CCNNNNNNNGG 1 cut(s) 192
BseMI GCAATG 1 cut(s) 176
BseMII CTCAG 1 cut(s) 262
BseNI ACTGG 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 192
BsmAI GTCTC 1 cut(s) 236
Bsp143I GATC 2 cut(s) 88, 113
Bsp19I CCATGG 1 cut(s) 63
BspCNI CTCAG 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 184
BspPI GGATC 2 cut(s) 96, 108
BsrDI GCAATG 1 cut(s) 176
BsrI ACTGG 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 2 cut(s) 88, 113
BssT1I CCWWGG 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 248
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 1 cut(s) 164
BstKTI GATC 2 cut(s) 91, 116
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 2 cut(s) 88, 113
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNSI RCATGY 1 cut(s) 40
BstX2I RGATCY 2 cut(s) 88, 113
BstYI RGATCY 2 cut(s) 88, 113
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 1 cut(s) 164
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 167
CviAII CATG 2 cut(s) 37, 64
CviJI RGCY 5 cut(s) 17, 62, 68, 83, 165
CviKI_1 RGCY 5 cut(s) 17, 62, 68, 83, 165
DdeI CTNAG 1 cut(s) 248
DpnI GATC 2 cut(s) 90, 115
DpnII GATC 2 cut(s) 88, 113
Eco130I CCWWGG 1 cut(s) 63
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 2 cut(s) 40, 67
FaiI YATR 5 cut(s) 38, 65, 96, 119, 156
FatI CATG 2 cut(s) 36, 63
FokI GGATG 1 cut(s) 171
Hin1II CATG 2 cut(s) 40, 67
HindIII AAGCTT 1 cut(s) 15
HinfI GANTC 2 cut(s) 55, 244
Hpy188III TCNNGA 3 cut(s) 86, 239, 291
HpyCH4V TGCA 2 cut(s) 52, 111
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 248
Hsp92II CATG 2 cut(s) 40, 67
Kzo9I GATC 2 cut(s) 88, 113
LpnPI CCDG 3 cut(s) 54, 71, 151
LweI GCATC 1 cut(s) 39
MalI GATC 2 cut(s) 90, 115
MboI GATC 2 cut(s) 88, 113
MboII GAAGA 7 cut(s) 58, 193, 267, 270, 273, 276, 279
MflI RGATCY 2 cut(s) 88, 113
MluCI AATT 1 cut(s) 187
MlyI GAGTC 1 cut(s) 238
MnlI CCTC 1 cut(s) 260
MseI TTAA 1 cut(s) 132
MslI CAYNNNNRTG 2 cut(s) 35, 41
MwoI GCNNNNNNNGC 1 cut(s) 80
NcoI CCATGG 1 cut(s) 63
NdeII GATC 2 cut(s) 88, 113
NlaIII CATG 2 cut(s) 40, 67
NlaIV GGNNCC 1 cut(s) 184
NspI RCATGY 1 cut(s) 40
PfeI GAWTC 1 cut(s) 55
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PspN4I GGNNCC 1 cut(s) 184
PsuI RGATCY 2 cut(s) 88, 113
RseI CAYNNNNRTG 2 cut(s) 35, 41
SaqAI TTAA 1 cut(s) 132
Sau3AI GATC 2 cut(s) 88, 113
SchI GAGTC 1 cut(s) 238
SetI ASST 3 cut(s) 19, 85, 271
SfaNI GCATC 1 cut(s) 39
SgeI CNNG 9 cut(s) 38, 49, 53, 71, 76, 92, 98, 178, 251
SmiMI CAYNNNNRTG 2 cut(s) 35, 41
SmlI CTYRAG 2 cut(s) 78, 239
SmoI CTYRAG 2 cut(s) 78, 239
Sse9I AATT 1 cut(s) 187
StyI CCWWGG 1 cut(s) 63
TasI AATT 1 cut(s) 187
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 1 cut(s) 48
TspDTI ATGAA 1 cut(s) 214
TspRI CASTG 1 cut(s) 48
XceI RCATGY 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.