Rh2CG444100

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000623
Physical Location & Seq
Reverse (-)
60150942 .. 60152044
1103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG444100.1

Sequence Viewer

Length: 441 bp
ATGGCAGAATCGGCTCAATCCTCATCAGATACAACAATTCAATTGCATGGCGAAGAATTTTGGCCTCTTTCAGGAAAACCTCACTTTGATATAATACTAGCAAAAACACATGTCAAACCGTATTACAAACTGGGGATCCCAGCCAAACTTCATCCAATACTACCATCTTGTTCATTCCCTACGGTTCTCACCTTTGCGGGAAAGAGTTGGGAGATGACATGTGATGGATCAAACAAAAAGCACAAAGGCTTGGACAAAGAGTCATGGAAAGCATTTATTGACGACAACAATTTGAAGGCTGGAGATGGATGCGTGTTTGAAGTCATGGAGTGCAGCAGTACAAAACTAGTATTAAGAGTCCAAATCCTCCGAGGTGACATCCCAGCTGAACTTTTAGAGAAGGAAAAAGGTGACGAAGCCGAGAAACCCATTATTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

146

Amino Acids

16.21

Weight (kDa)

5.95

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 62 - 120 1.5e-08 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35581 FvH4_6g35581 FvH4_6g35582 FvH4_7g07710 FvH4_7g07720
malus_domestica MD02G1233300.v1.1 MD07G1080300.v1.1
prunus_persica Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G104300_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1
pyrus_communis pycom02g20150 pycom07g06390
rosa_chinensis RchiOBHm_Chr1g0342371 RchiOBHm_Chr1g0342381 RchiOBHm_Chr1g0342401 RchiOBHm_Chr1g0342491 RchiOBHm_Chr1g0342511 RchiOBHm_Chr2g0147401 RchiOBHm_Chr2g0147411
rosa_laevigata RLG00000020253 RLG00000020259 RLG00000029157 RLG00000029158
rosa_multiflora Rmu_sc0000979.1_g000010 Rmu_sc0001159.1_g000034 Rmu_sc0001159.1_g000035 Rmu_sc0005388.1_g000001 Rmu_sc0009535.1_g000001 Rmu_sc0009535.1_g000003 Rmu_sc0011976.1_g000004 Rmu_sc0011976.1_g000005 Rmu_sc0027133.1_g000002
rosa_roxburghii Rroxscaffold_2G00099550 Rroxscaffold_2G00099560 Rroxscaffold_4G00296180 Rroxscaffold_4G00312990 Rroxscaffold_4G00313010 Rroxscaffold_4G00313030 Rroxscaffold_4G00313060
rosa_rugosa Rorug01G0150600.1 Rorug01G0150700.1 Rorug01G0150800.1 Rorug01G0150900.1 Rorug01G0151000.1 Rorug01G0151100.1 Rorug01G0151200.1 Rorug01G0151300.1 Rorug01G0151400.1 Rorug02G0399500 Rorug02G0399600 Rorug02G0399700 Rorug02G0399800 Rorug02G0399800 Rorug02G0399900
rosa_samantha Rh1AG165800 Rh1AG165900 Rh1BG132300 Rh1BG132400 Rh1CG154400 Rh1CG154500 Rh1DG167200 Rh1DG167300 Rh2AG456600 Rh2AG456700 Rh2BG469100 Rh2CG444100 Rh2CG444200 Rh2DG478400 Rh2DG478500
rosa_wichuraiana Rw1G013810 Rw1G013820 Rw1G013860 Rw2G037370 Rw2G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 197
AclWI GGATC 3 cut(s) 130, 143, 235
AcsI RAATTY 1 cut(s) 56
AfaI GTAC 1 cut(s) 340
AfiI CCNNNNNNNGG 1 cut(s) 71
AflIII ACRYGT 2 cut(s) 109, 218
AgsI TTSAA 3 cut(s) 41, 295, 320
AhdI GACNNNNNGTC 1 cut(s) 259
AhlI ACTAGT 1 cut(s) 346
AluBI AGCT 1 cut(s) 386
AluI AGCT 1 cut(s) 386
AlwI GGATC 3 cut(s) 130, 143, 235
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 333
ApoI RAATTY 1 cut(s) 56
AsuHPI GGTGA 3 cut(s) 181, 386, 422
BamHI GGATCC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 345
BccI CCATC 3 cut(s) 172, 218, 299
BcuI ACTAGT 1 cut(s) 346
BfaI CTAG 2 cut(s) 98, 347
BisI GCNGC 1 cut(s) 334
BlsI GCNGC 1 cut(s) 335
BmeRI GACNNNNNGTC 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 137
BmrI ACTGGG 1 cut(s) 140
BmsI GCATC 1 cut(s) 299
BmuI ACTGGG 1 cut(s) 140
BpmI CTGGAG 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 370
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 370
BseGI GGATG 3 cut(s) 151, 314, 378
BseLI CCNNNNNNNGG 1 cut(s) 71
BseNI ACTGG 1 cut(s) 135
BseXI GCAGC 1 cut(s) 345
BseYI CCCAGC 2 cut(s) 139, 382
BsgI GTGCAG 1 cut(s) 352
BshFI GGCC 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 71
BsnI GGCC 1 cut(s) 64
Bsp143I GATC 2 cut(s) 135, 227
BspACI CCGC 1 cut(s) 197
BspANI GGCC 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 137
BspPI GGATC 3 cut(s) 130, 143, 235
BsrI ACTGG 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 370
BssMI GATC 2 cut(s) 135, 227
Bst4CI ACNGT 2 cut(s) 120, 184
BstENI CCTNNNNNAGG 1 cut(s) 69
BstF5I GGATG 3 cut(s) 151, 314, 378
BstKTI GATC 2 cut(s) 138, 230
BstMBI GATC 2 cut(s) 135, 227
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 2 cut(s) 113, 222
BstV1I GCAGC 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 135
BstYI RGATCY 1 cut(s) 135
BsuRI GGCC 1 cut(s) 64
BtsCI GGATG 3 cut(s) 151, 314, 378
Csp6I GTAC 1 cut(s) 339
CviAII CATG 5 cut(s) 47, 110, 219, 264, 325
CviJI RGCY 7 cut(s) 14, 64, 143, 249, 299, 386, 419
CviKI_1 RGCY 7 cut(s) 14, 64, 143, 249, 299, 386, 419
CviQI GTAC 1 cut(s) 339
DpnI GATC 2 cut(s) 137, 229
DpnII GATC 2 cut(s) 135, 227
DriI GACNNNNNGTC 1 cut(s) 259
Eam1105I GACNNNNNGTC 1 cut(s) 259
EcoNI CCTNNNNNAGG 1 cut(s) 69
FaeI CATG 5 cut(s) 50, 113, 222, 267, 328
FaiI YATR 7 cut(s) 48, 92, 111, 220, 265, 326, 439
FatI CATG 5 cut(s) 46, 109, 218, 263, 324
FauI CCCGC 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 334
FokI GGATG 3 cut(s) 138, 321, 365
Fsp4HI GCNGC 1 cut(s) 334
FspBI CTAG 2 cut(s) 98, 347
GluI GCNGC 1 cut(s) 334
GsaI CCCAGC 2 cut(s) 143, 386
GsuI CTGGAG 1 cut(s) 321
HaeIII GGCC 1 cut(s) 64
Hin1II CATG 5 cut(s) 50, 113, 222, 267, 328
HinfI GANTC 3 cut(s) 8, 260, 357
HphI GGTGA 3 cut(s) 181, 386, 422
Hpy188I TCNGA 2 cut(s) 28, 371
Hpy188III TCNNGA 1 cut(s) 72
HpyAV CCTTC 2 cut(s) 289, 394
HpyCH4III ACNGT 2 cut(s) 120, 184
HpyCH4V TGCA 2 cut(s) 46, 333
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
Hsp92II CATG 5 cut(s) 50, 113, 222, 267, 328
Kzo9I GATC 2 cut(s) 135, 227
LpnPI CCDG 5 cut(s) 57, 116, 153, 285, 396
Lsp1109I GCAGC 1 cut(s) 345
LweI GCATC 1 cut(s) 299
MaeI CTAG 2 cut(s) 98, 347
MaeIII GTNAC 2 cut(s) 374, 410
MalI GATC 2 cut(s) 137, 229
MboI GATC 2 cut(s) 135, 227
MboII GAAGA 1 cut(s) 65
MfeI CAATTG 1 cut(s) 41
MflI RGATCY 1 cut(s) 135
MluCI AATT 4 cut(s) 36, 41, 56, 289
MlyI GAGTC 2 cut(s) 269, 366
MnlI CCTC 5 cut(s) 31, 75, 90, 365, 377
MseI TTAA 1 cut(s) 353
MspA1I CMGCKG 1 cut(s) 386
MunI CAATTG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 2 cut(s) 135, 227
NlaIII CATG 5 cut(s) 50, 113, 222, 267, 328
NlaIV GGNNCC 1 cut(s) 137
NmuCI GTSAC 2 cut(s) 374, 410
NspI RCATGY 2 cut(s) 113, 222
PciI ACATGT 2 cut(s) 109, 218
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 1 cut(s) 335
PleI GAGTC 2 cut(s) 268, 365
PpsI GAGTC 2 cut(s) 268, 365
PscI ACATGT 2 cut(s) 109, 218
PspFI CCCAGC 2 cut(s) 139, 382
PspN4I GGNNCC 1 cut(s) 137
PsuI RGATCY 1 cut(s) 135
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 1 cut(s) 340
RsaNI GTAC 1 cut(s) 339
SaqAI TTAA 1 cut(s) 353
SatI GCNGC 1 cut(s) 334
Sau3AI GATC 2 cut(s) 135, 227
SchI GAGTC 2 cut(s) 269, 366
SetI ASST 5 cut(s) 82, 194, 376, 388, 412
SfaNI GCATC 1 cut(s) 299
SpeI ACTAGT 1 cut(s) 346
Sse9I AATT 4 cut(s) 36, 41, 56, 289
SsiI CCGC 1 cut(s) 197
SspMI CTAG 2 cut(s) 98, 347
TaaI ACNGT 2 cut(s) 120, 184
TasI AATT 4 cut(s) 36, 41, 56, 289
TatI WGTACW 1 cut(s) 338
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 353
Tru9I TTAA 1 cut(s) 353
TseFI GTSAC 2 cut(s) 374, 410
TseI GCWGC 1 cut(s) 333
Tsp45I GTSAC 2 cut(s) 374, 410
TspDTI ATGAA 2 cut(s) 140, 162
XagI CCTNNNNNAGG 1 cut(s) 69
XapI RAATTY 1 cut(s) 56
XceI RCATGY 2 cut(s) 113, 222
XspI CTAG 2 cut(s) 98, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.