Rw1G013860

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000623
Physical Location & Seq
Forward (+)
30889221 .. 30892674
3454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G013860.1

Sequence Viewer

Length: 528 bp
ATGGGAGATCCTGCAAGCCAATCCTCCTCATCAGATCCCACGATTGAATTGCGTGGTGATGAATTCTGGCCACTTTCAGGGAAACCTTTCTTTGACATCATCCTCACAAAATCACATGTCAACCCCAAATGTCAAATGTCGATCCCATCCAAACTACATCCACTACTACTGTCCTGTTCAGTCCCTGTGGTTCTCACTTTTGGGGGCAAGACTTGGGAAATGACATGCAATACAGCAAACAATGCTCAGAAGTTCTTTGATAGACCATCGTGGAAAGCATTTGTTGACGACAACAATCTGAAGGTTGGAGATGGGTGTGTGTTCGAACTTACGGAGTGCAGCAGCACAAAGCTGGTATTTAGAGTCCAAATTCTCAGAGGTGAAATCCCAGCTCAACTTCTAGACAAGGACACTCTGGTGGCAATCAAGTTTGGGAGAACTCTGTTTATAGGGGTACGAAGAGCAAAGAACCGTTTTTTGTTTCATATAGAAAAGAATAGCGTTTCAAATAGAAACGTAGATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

175

Amino Acids

19.61

Weight (kDa)

8.87

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 31 - 122 3.4e-13 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35581 FvH4_6g35581 FvH4_6g35582 FvH4_7g07710 FvH4_7g07720
malus_domestica MD02G1233300.v1.1 MD07G1080300.v1.1
prunus_persica Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G104300_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1
pyrus_communis pycom02g20150 pycom07g06390
rosa_chinensis RchiOBHm_Chr1g0342371 RchiOBHm_Chr1g0342381 RchiOBHm_Chr1g0342401 RchiOBHm_Chr1g0342491 RchiOBHm_Chr1g0342511 RchiOBHm_Chr2g0147401 RchiOBHm_Chr2g0147411
rosa_laevigata RLG00000020253 RLG00000020259 RLG00000029157 RLG00000029158
rosa_multiflora Rmu_sc0000979.1_g000010 Rmu_sc0001159.1_g000034 Rmu_sc0001159.1_g000035 Rmu_sc0005388.1_g000001 Rmu_sc0009535.1_g000001 Rmu_sc0009535.1_g000003 Rmu_sc0011976.1_g000004 Rmu_sc0011976.1_g000005 Rmu_sc0027133.1_g000002
rosa_roxburghii Rroxscaffold_2G00099550 Rroxscaffold_2G00099560 Rroxscaffold_4G00296180 Rroxscaffold_4G00312990 Rroxscaffold_4G00313010 Rroxscaffold_4G00313030 Rroxscaffold_4G00313060
rosa_rugosa Rorug01G0150600.1 Rorug01G0150700.1 Rorug01G0150800.1 Rorug01G0150900.1 Rorug01G0151000.1 Rorug01G0151100.1 Rorug01G0151200.1 Rorug01G0151300.1 Rorug01G0151400.1 Rorug02G0399500 Rorug02G0399600 Rorug02G0399700 Rorug02G0399800 Rorug02G0399800 Rorug02G0399900
rosa_samantha Rh1AG165800 Rh1AG165900 Rh1BG132300 Rh1BG132400 Rh1CG154400 Rh1CG154500 Rh1DG167200 Rh1DG167300 Rh2AG456600 Rh2AG456700 Rh2BG469100 Rh2CG444100 Rh2CG444200 Rh2DG478400 Rh2DG478500
rosa_wichuraiana Rw1G013810 Rw1G013820 Rw1G013860 Rw2G037370 Rw2G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 2, 29, 136, 515
AcoI YGGCCR 1 cut(s) 68
AcsI RAATTY 2 cut(s) 62, 369
AcuI CTGAAG 1 cut(s) 320
AfaI GTAC 1 cut(s) 456
AfiI CCNNNNNNNGG 1 cut(s) 77
AflIII ACRYGT 1 cut(s) 115
AgsI TTSAA 2 cut(s) 47, 507
AleI CACNNNNGTG 1 cut(s) 416
AluBI AGCT 2 cut(s) 352, 392
AluI AGCT 2 cut(s) 352, 392
AlwI GGATC 4 cut(s) 2, 29, 136, 515
AlwNI CAGNNNCTG 1 cut(s) 185
AoxI GGCC 1 cut(s) 68
ApeKI GCWGC 2 cut(s) 339, 342
ApoI RAATTY 2 cut(s) 62, 369
Asp700I GAANNNNTTC 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 68, 392
AsuII TTCGAA 1 cut(s) 324
BalI TGGCCA 1 cut(s) 70
BbvI GCAGC 2 cut(s) 351, 354
BccI CCATC 3 cut(s) 154, 274, 305
BcgI CGANNNNNNTGC 2 cut(s) 31, 65
BfaI CTAG 1 cut(s) 401
BisI GCNGC 2 cut(s) 340, 343
BlsI GCNGC 2 cut(s) 341, 344
Bpu14I TTCGAA 1 cut(s) 324
Bsc4I CCNNNNNNNGG 1 cut(s) 77
BseGI GGATG 3 cut(s) 99, 146, 157
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMII CTCAG 2 cut(s) 260, 388
BseRI GAGGAG 1 cut(s) 16
BseXI GCAGC 2 cut(s) 351, 354
BseYI CCCAGC 1 cut(s) 388
BsgI GTGCAG 1 cut(s) 358
BshFI GGCC 1 cut(s) 70
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 167
BsnI GGCC 1 cut(s) 70
Bsp119I TTCGAA 1 cut(s) 324
Bsp143I GATC 4 cut(s) 7, 34, 141, 520
BspANI GGCC 1 cut(s) 70
BspCNI CTCAG 2 cut(s) 259, 387
BspPI GGATC 4 cut(s) 2, 29, 136, 515
BspQI GCTCTTC 1 cut(s) 454
BspT104I TTCGAA 1 cut(s) 324
BssMI GATC 4 cut(s) 7, 34, 141, 520
Bst4CI ACNGT 2 cut(s) 171, 473
Bst6I CTCTTC 1 cut(s) 454
BstAPI GCANNNNNTGC 1 cut(s) 242
BstBI TTCGAA 1 cut(s) 324
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 2 cut(s) 246, 374
BstF5I GGATG 3 cut(s) 99, 146, 157
BstKTI GATC 4 cut(s) 10, 37, 144, 523
BstMBI GATC 4 cut(s) 7, 34, 141, 520
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNSI RCATGY 2 cut(s) 119, 228
BstV1I GCAGC 2 cut(s) 351, 354
BstX2I RGATCY 3 cut(s) 7, 34, 520
BstYI RGATCY 3 cut(s) 7, 34, 520
BsuRI GGCC 1 cut(s) 70
BtsCI GGATG 3 cut(s) 99, 146, 157
Cac8I GCNNGC 1 cut(s) 16
CaiI CAGNNNCTG 1 cut(s) 185
Csp6I GTAC 1 cut(s) 455
CviAII CATG 2 cut(s) 116, 225
CviJI RGCY 4 cut(s) 18, 70, 352, 392
CviKI_1 RGCY 4 cut(s) 18, 70, 352, 392
CviQI GTAC 1 cut(s) 455
DdeI CTNAG 2 cut(s) 246, 374
DpnI GATC 4 cut(s) 9, 36, 143, 522
DpnII GATC 4 cut(s) 7, 34, 141, 520
EaeI YGGCCR 1 cut(s) 68
Eam1104I CTCTTC 1 cut(s) 454
EarI CTCTTC 1 cut(s) 454
Eco57I CTGAAG 1 cut(s) 320
EcoRI GAATTC 1 cut(s) 62
FaeI CATG 2 cut(s) 119, 228
FaiI YATR 5 cut(s) 117, 226, 449, 486, 488
FaqI GGGAC 1 cut(s) 167
FatI CATG 2 cut(s) 115, 224
Fnu4HI GCNGC 2 cut(s) 340, 343
FokI GGATG 3 cut(s) 86, 133, 144
Fsp4HI GCNGC 2 cut(s) 340, 343
FspBI CTAG 1 cut(s) 401
GluI GCNGC 2 cut(s) 340, 343
GsaI CCCAGC 1 cut(s) 392
HaeIII GGCC 1 cut(s) 70
Hin1II CATG 2 cut(s) 119, 228
HincII GTYRAC 2 cut(s) 121, 286
HindII GTYRAC 2 cut(s) 121, 286
HinfI GANTC 1 cut(s) 363
HphI GGTGA 2 cut(s) 68, 392
Hpy166II GTNNAC 2 cut(s) 121, 286
Hpy188I TCNGA 4 cut(s) 34, 249, 300, 377
Hpy188III TCNNGA 1 cut(s) 401
Hpy8I GTNNAC 2 cut(s) 121, 286
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 2 cut(s) 171, 473
HpyCH4IV ACGT 1 cut(s) 516
HpyCH4V TGCA 3 cut(s) 14, 228, 339
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 2 cut(s) 246, 374
HpySE526I ACGT 1 cut(s) 516
Hsp92II CATG 2 cut(s) 119, 228
Kzo9I GATC 4 cut(s) 7, 34, 141, 520
LguI GCTCTTC 1 cut(s) 454
LpnPI CCDG 8 cut(s) 24, 52, 63, 187, 198, 338, 401, 402
Lsp1109I GCAGC 2 cut(s) 351, 354
MaeI CTAG 1 cut(s) 401
MaeII ACGT 1 cut(s) 516
MalI GATC 4 cut(s) 9, 36, 143, 522
MboI GATC 4 cut(s) 7, 34, 141, 520
MboII GAAGA 1 cut(s) 471
MflI RGATCY 3 cut(s) 7, 34, 520
MlsI TGGCCA 1 cut(s) 70
MluCI AATT 3 cut(s) 47, 62, 369
MluNI TGGCCA 1 cut(s) 70
MlyI GAGTC 1 cut(s) 372
MmeI TCCRAC 1 cut(s) 286
MnlI CCTC 4 cut(s) 34, 37, 113, 371
Mox20I TGGCCA 1 cut(s) 70
MroXI GAANNNNTTC 1 cut(s) 86
MscI TGGCCA 1 cut(s) 70
MseI TTAA 1 cut(s) 526
MslI CAYNNNNRTG 1 cut(s) 416
Msp20I TGGCCA 1 cut(s) 70
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeII GATC 4 cut(s) 7, 34, 141, 520
NlaIII CATG 2 cut(s) 119, 228
NspI RCATGY 2 cut(s) 119, 228
NspV TTCGAA 1 cut(s) 324
OliI CACNNNNGTG 1 cut(s) 416
PciI ACATGT 1 cut(s) 115
PciSI GCTCTTC 1 cut(s) 454
PdmI GAANNNNTTC 1 cut(s) 86
PkrI GCNGC 2 cut(s) 341, 344
PleI GAGTC 1 cut(s) 371
PpsI GAGTC 1 cut(s) 371
PscI ACATGT 1 cut(s) 115
PspFI CCCAGC 1 cut(s) 388
PstNI CAGNNNCTG 1 cut(s) 185
PsuI RGATCY 3 cut(s) 7, 34, 520
RsaI GTAC 1 cut(s) 456
RsaNI GTAC 1 cut(s) 455
RseI CAYNNNNRTG 1 cut(s) 416
SapI GCTCTTC 1 cut(s) 454
SaqAI TTAA 1 cut(s) 526
SatI GCNGC 2 cut(s) 340, 343
Sau3AI GATC 4 cut(s) 7, 34, 141, 520
SchI GAGTC 1 cut(s) 372
SetI ASST 6 cut(s) 88, 306, 354, 382, 394, 519
SfuI TTCGAA 1 cut(s) 324
SmiMI CAYNNNNRTG 1 cut(s) 416
Sse9I AATT 3 cut(s) 47, 62, 369
SspMI CTAG 1 cut(s) 401
TaaI ACNGT 2 cut(s) 171, 473
TaiI ACGT 1 cut(s) 519
TaqI TCGA 2 cut(s) 140, 324
TasI AATT 3 cut(s) 47, 62, 369
Tru1I TTAA 1 cut(s) 526
Tru9I TTAA 1 cut(s) 526
TseI GCWGC 2 cut(s) 339, 342
TspDTI ATGAA 2 cut(s) 75, 473
TspGWI ACGGA 1 cut(s) 347
XapI RAATTY 2 cut(s) 62, 369
XbaI TCTAGA 1 cut(s) 400
XceI RCATGY 2 cut(s) 119, 228
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.