Prupe.2G104700_v2.0.a1

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000623
Physical Location & Seq
Forward (+)
16167336 .. 16170928
3593 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G104700.1

Sequence Viewer

Length: 447 bp
ATGAAGGGAGAACCTCGAATGGGAGACCTACTCACATCAAATCCCGTGATTGAACTGGAAGGGGATGAATTTTGGCCACTTTCTGGGAAACCCTTTTTTGATGTGGTTCTCACGAAAACAAATATCAAACGTCTGTACCAACTGGTGGTCCCAGGCAAATTTAGTGCAACACTACCTTCCTGTTCAATCCCTACGGTTCTCATATTTCGGGGCAAGAACTGGGAGATGATATATCATGGATCATCCAGCCATAAAAGGCTTGATAACTGGAGAGCGTTTGCCGTTGACAACAATTTGAAGGTTGGAGATGCATGTGTGTTTGAACAACTAGAGTGCAGCAGTACTAGGCTAGTATTCAGAGTCCAAATTCTTAGAGGTGACATCTCATCTGAATTTCTAGACAAGCTCGGTGGTGATAATGTAGATGCACCAATTGTTCTCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

149

Amino Acids

16.63

Weight (kDa)

5.72

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35581 FvH4_6g35581 FvH4_6g35582 FvH4_7g07710 FvH4_7g07720
malus_domestica MD02G1233300.v1.1 MD07G1080300.v1.1
prunus_persica Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G104300_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1
pyrus_communis pycom02g20150 pycom07g06390
rosa_chinensis RchiOBHm_Chr1g0342371 RchiOBHm_Chr1g0342381 RchiOBHm_Chr1g0342401 RchiOBHm_Chr1g0342491 RchiOBHm_Chr1g0342511 RchiOBHm_Chr2g0147401 RchiOBHm_Chr2g0147411
rosa_laevigata RLG00000020253 RLG00000020259 RLG00000029157 RLG00000029158
rosa_multiflora Rmu_sc0000979.1_g000010 Rmu_sc0001159.1_g000034 Rmu_sc0001159.1_g000035 Rmu_sc0005388.1_g000001 Rmu_sc0009535.1_g000001 Rmu_sc0009535.1_g000003 Rmu_sc0011976.1_g000004 Rmu_sc0011976.1_g000005 Rmu_sc0027133.1_g000002
rosa_roxburghii Rroxscaffold_2G00099550 Rroxscaffold_2G00099560 Rroxscaffold_4G00296180 Rroxscaffold_4G00312990 Rroxscaffold_4G00313010 Rroxscaffold_4G00313030 Rroxscaffold_4G00313060
rosa_rugosa Rorug01G0150600.1 Rorug01G0150700.1 Rorug01G0150800.1 Rorug01G0150900.1 Rorug01G0151000.1 Rorug01G0151100.1 Rorug01G0151200.1 Rorug01G0151300.1 Rorug01G0151400.1 Rorug02G0399500 Rorug02G0399600 Rorug02G0399700 Rorug02G0399800 Rorug02G0399800 Rorug02G0399900
rosa_samantha Rh1AG165800 Rh1AG165900 Rh1BG132300 Rh1BG132400 Rh1CG154400 Rh1CG154500 Rh1DG167200 Rh1DG167300 Rh2AG456600 Rh2AG456700 Rh2BG469100 Rh2CG444100 Rh2CG444200 Rh2DG478400 Rh2DG478500
rosa_wichuraiana Rw1G013810 Rw1G013820 Rw1G013860 Rw2G037370 Rw2G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 83, 145
AclWI GGATC 1 cut(s) 247
AcoI YGGCCR 1 cut(s) 74
AcsI RAATTY 4 cut(s) 68, 158, 366, 392
AfaI GTAC 2 cut(s) 137, 343
AfiI CCNNNNNNNGG 3 cut(s) 20, 83, 145
AgsI TTSAA 4 cut(s) 53, 186, 298, 323
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 1 cut(s) 406
AluI AGCT 1 cut(s) 406
Alw26I GTCTC 1 cut(s) 18
AlwI GGATC 1 cut(s) 247
AoxI GGCC 1 cut(s) 74
ApeKI GCWGC 1 cut(s) 336
ApoI RAATTY 4 cut(s) 68, 158, 366, 392
AspS9I GGNCC 1 cut(s) 148
AsuHPI GGTGA 2 cut(s) 389, 425
AvaII GGWCC 1 cut(s) 148
BaeI ACNNNNGTAYC 2 cut(s) 119, 152
BalI TGGCCA 1 cut(s) 76
BbvI GCAGC 1 cut(s) 348
BceAI ACGGC 1 cut(s) 266
BciT130I CCWGG 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 4 cut(s) 329, 345, 350, 398
BisI GCNGC 1 cut(s) 337
BlsI GCNGC 1 cut(s) 338
BmcAI AGTACT 1 cut(s) 343
Bme1390I CCNGG 1 cut(s) 153
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 153
BmrI ACTGGG 1 cut(s) 229
BmsI GCATC 2 cut(s) 298, 415
BmuI ACTGGG 1 cut(s) 229
BplI GAGNNNNNCTC 2 cut(s) 15, 47
BpmI CTGGAG 1 cut(s) 289
BsaI GGTCTC 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 151
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 83, 145
Bse1I ACTGG 4 cut(s) 60, 147, 224, 272
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 151
BseGI GGATG 2 cut(s) 70, 242
BseLI CCNNNNNNNGG 3 cut(s) 20, 83, 145
BseNI ACTGG 4 cut(s) 60, 147, 224, 272
BseXI GCAGC 1 cut(s) 348
BsgI GTGCAG 1 cut(s) 355
BshFI GGCC 1 cut(s) 76
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 3 cut(s) 20, 83, 145
BsmAI GTCTC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 134
BsnI GGCC 1 cut(s) 76
Bso31I GGTCTC 1 cut(s) 18
Bsp143I GATC 1 cut(s) 239
BspANI GGCC 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 150
BspPI GGATC 1 cut(s) 247
BspTNI GGTCTC 1 cut(s) 18
BsrI ACTGG 4 cut(s) 60, 147, 224, 272
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 1 cut(s) 239
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 371
BstF5I GGATG 2 cut(s) 70, 242
BstKTI GATC 1 cut(s) 242
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 1 cut(s) 239
BstNI CCWGG 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 315
BstSCI CCNGG 1 cut(s) 151
BstV1I GCAGC 1 cut(s) 348
BsuRI GGCC 1 cut(s) 76
BtsCI GGATG 2 cut(s) 70, 242
Cfr13I GGNCC 1 cut(s) 148
Csp6I GTAC 2 cut(s) 136, 342
CspCI CAANNNNNGTGG 2 cut(s) 391, 426
CviAII CATG 2 cut(s) 236, 312
CviJI RGCY 5 cut(s) 76, 249, 259, 349, 406
CviKI_1 RGCY 5 cut(s) 76, 249, 259, 349, 406
CviQI GTAC 2 cut(s) 136, 342
DdeI CTNAG 1 cut(s) 371
DpnI GATC 1 cut(s) 241
DpnII GATC 1 cut(s) 239
EaeI YGGCCR 1 cut(s) 74
Eco31I GGTCTC 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 151
EcoT22I ATGCAT 1 cut(s) 313
FaeI CATG 2 cut(s) 239, 315
FaiI YATR 5 cut(s) 203, 232, 237, 252, 313
FaqI GGGAC 1 cut(s) 134
FatI CATG 2 cut(s) 235, 311
Fnu4HI GCNGC 1 cut(s) 337
FokI GGATG 2 cut(s) 77, 229
Fsp4HI GCNGC 1 cut(s) 337
FspBI CTAG 4 cut(s) 329, 345, 350, 398
GluI GCNGC 1 cut(s) 337
GsuI CTGGAG 1 cut(s) 289
HaeIII GGCC 1 cut(s) 76
Hin1II CATG 2 cut(s) 239, 315
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 1 cut(s) 360
HphI GGTGA 2 cut(s) 389, 425
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 2 cut(s) 359, 391
Hpy188III TCNNGA 3 cut(s) 112, 398, 440
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 3 cut(s) 53, 186, 292
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 130
HpyCH4V TGCA 4 cut(s) 167, 311, 336, 428
HpyF3I CTNAG 1 cut(s) 371
HpySE526I ACGT 1 cut(s) 130
Hsp92II CATG 2 cut(s) 239, 315
Kzo9I GATC 1 cut(s) 239
LpnPI CCDG 9 cut(s) 41, 69, 128, 138, 165, 193, 205, 253, 259
Lsp1109I GCAGC 1 cut(s) 348
LweI GCATC 2 cut(s) 298, 415
MaeI CTAG 4 cut(s) 329, 345, 350, 398
MaeII ACGT 1 cut(s) 130
MaeIII GTNAC 1 cut(s) 377
MalI GATC 1 cut(s) 241
MboI GATC 1 cut(s) 239
MfeI CAATTG 1 cut(s) 432
MlsI TGGCCA 1 cut(s) 76
MluCI AATT 6 cut(s) 68, 158, 292, 366, 392, 432
MluNI TGGCCA 1 cut(s) 76
MlyI GAGTC 1 cut(s) 369
MmeI TCCRAC 1 cut(s) 283
MnlI CCTC 2 cut(s) 24, 368
Mox20I TGGCCA 1 cut(s) 76
Mph1103I ATGCAT 1 cut(s) 313
MscI TGGCCA 1 cut(s) 76
Msp20I TGGCCA 1 cut(s) 76
MspR9I CCNGG 1 cut(s) 153
MunI CAATTG 1 cut(s) 432
MvaI CCWGG 1 cut(s) 153
NdeII GATC 1 cut(s) 239
NlaIII CATG 2 cut(s) 239, 315
NlaIV GGNNCC 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 377
NsiI ATGCAT 1 cut(s) 313
NspI RCATGY 1 cut(s) 315
PflMI CCANNNNNTGG 2 cut(s) 83, 145
PkrI GCNGC 1 cut(s) 338
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 150
PspPI GGNCC 1 cut(s) 148
RsaI GTAC 2 cut(s) 137, 343
RsaNI GTAC 2 cut(s) 136, 342
SatI GCNGC 1 cut(s) 337
Sau3AI GATC 1 cut(s) 239
Sau96I GGNCC 1 cut(s) 148
ScaI AGTACT 1 cut(s) 343
SchI GAGTC 1 cut(s) 369
ScrFI CCNGG 1 cut(s) 153
SetI ASST 7 cut(s) 16, 30, 133, 178, 303, 379, 408
SfaNI GCATC 2 cut(s) 298, 415
SinI GGWCC 1 cut(s) 148
Sse9I AATT 6 cut(s) 68, 158, 292, 366, 392, 432
SspMI CTAG 4 cut(s) 329, 345, 350, 398
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 1 cut(s) 133
TaqI TCGA 2 cut(s) 16, 441
TasI AATT 6 cut(s) 68, 158, 292, 366, 392, 432
TatI WGTACW 1 cut(s) 341
TseFI GTSAC 1 cut(s) 377
TseI GCWGC 1 cut(s) 336
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 2 cut(s) 17, 81
Van91I CCANNNNNTGG 2 cut(s) 83, 145
VpaK11BI GGWCC 1 cut(s) 148
XapI RAATTY 4 cut(s) 68, 158, 366, 392
XbaI TCTAGA 1 cut(s) 397
XceI RCATGY 1 cut(s) 315
XspI CTAG 4 cut(s) 329, 345, 350, 398
ZrmI AGTACT 1 cut(s) 343
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.