FvH4_7g07720

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000623
Physical Location & Seq
Forward (+)
7580814 .. 7586040
5227 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g07720.t1

Sequence Viewer

Length: 447 bp
ATGGGAGACCCTGCAGACCAATCCTCATCAAATCCTGCGACTGAATTGCGTGGGGATGAATTCTGGCCACTTTCAGGGAAACCTTTCTTTGACATCATACTCACAAAATCACATGTGAACCCCAAATGTCAAATGTCAATCCCATCCAAGATACATCCACTACTACCATCCTGTTCAGTCCCTATAGTTCTCACATTTGCGGGCAGGACTTGGGAAATGACATGCAATGCAGCCAAAAAGACCTCACAAGTACGTGTGGATTCACTGTCATGGAAAGCATTCGTCGACGACAACAATCTGAAGGTCGGAGATGGGTGTGTGTTTGAACTCATGGAGTGCAGCAGCACGAAGCTGATGTTTAGAGTCCAAATTCTCAGAGGTGACATCCCGGCTGAACTTGTAGACAAGTACAGCGGTGAGGATGCAGCGAACCCCTTTGTGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

149

Amino Acids

16.32

Weight (kDa)

5.33

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 30 - 122 1.4e-12 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35581 FvH4_6g35581 FvH4_6g35582 FvH4_7g07710 FvH4_7g07720
malus_domestica MD02G1233300.v1.1 MD07G1080300.v1.1
prunus_persica Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G104300_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1
pyrus_communis pycom02g20150 pycom07g06390
rosa_chinensis RchiOBHm_Chr1g0342371 RchiOBHm_Chr1g0342381 RchiOBHm_Chr1g0342401 RchiOBHm_Chr1g0342491 RchiOBHm_Chr1g0342511 RchiOBHm_Chr2g0147401 RchiOBHm_Chr2g0147411
rosa_laevigata RLG00000020253 RLG00000020259 RLG00000029157 RLG00000029158
rosa_multiflora Rmu_sc0000979.1_g000010 Rmu_sc0001159.1_g000034 Rmu_sc0001159.1_g000035 Rmu_sc0005388.1_g000001 Rmu_sc0009535.1_g000001 Rmu_sc0009535.1_g000003 Rmu_sc0011976.1_g000004 Rmu_sc0011976.1_g000005 Rmu_sc0027133.1_g000002
rosa_roxburghii Rroxscaffold_2G00099550 Rroxscaffold_2G00099560 Rroxscaffold_4G00296180 Rroxscaffold_4G00312990 Rroxscaffold_4G00313010 Rroxscaffold_4G00313030 Rroxscaffold_4G00313060
rosa_rugosa Rorug01G0150600.1 Rorug01G0150700.1 Rorug01G0150800.1 Rorug01G0150900.1 Rorug01G0151000.1 Rorug01G0151100.1 Rorug01G0151200.1 Rorug01G0151300.1 Rorug01G0151400.1 Rorug02G0399500 Rorug02G0399600 Rorug02G0399700 Rorug02G0399800 Rorug02G0399800 Rorug02G0399900
rosa_samantha Rh1AG165800 Rh1AG165900 Rh1BG132300 Rh1BG132400 Rh1CG154400 Rh1CG154500 Rh1DG167200 Rh1DG167300 Rh2AG456600 Rh2AG456700 Rh2BG469100 Rh2CG444100 Rh2CG444200 Rh2DG478400 Rh2DG478500
rosa_wichuraiana Rw1G013810 Rw1G013820 Rw1G013860 Rw2G037370 Rw2G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 285, 402
AciI CCGC 2 cut(s) 200, 414
AcoI YGGCCR 1 cut(s) 65
AcsI RAATTY 2 cut(s) 59, 369
AcuI CTGAAG 1 cut(s) 320
AfaI GTAC 2 cut(s) 252, 410
AfiI CCNNNNNNNGG 1 cut(s) 74
AflIII ACRYGT 2 cut(s) 112, 253
AgsI TTSAA 1 cut(s) 326
AluBI AGCT 1 cut(s) 352
AluI AGCT 1 cut(s) 352
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 4 cut(s) 230, 339, 342, 425
ApoI RAATTY 2 cut(s) 59, 369
Asp700I GAANNNNTTC 2 cut(s) 83, 278
AsuC2I CCSGG 1 cut(s) 389
AsuHPI GGTGA 2 cut(s) 392, 428
BalI TGGCCA 1 cut(s) 67
BbvI GCAGC 4 cut(s) 242, 351, 354, 437
BccI CCATC 3 cut(s) 151, 175, 305
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BcnI CCSGG 1 cut(s) 389
BfmI CTRYAG 2 cut(s) 12, 183
BisI GCNGC 4 cut(s) 231, 340, 343, 426
BlsI GCNGC 4 cut(s) 232, 341, 344, 427
Bme1390I CCNGG 1 cut(s) 389
BmrFI CCNGG 1 cut(s) 389
BmsI GCATC 1 cut(s) 412
BpuMI CCSGG 1 cut(s) 389
BsaAI YACGTR 1 cut(s) 254
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse3DI GCAATG 1 cut(s) 232
BseGI GGATG 6 cut(s) 61, 143, 154, 167, 384, 427
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 1 cut(s) 388
BseXI GCAGC 4 cut(s) 242, 351, 354, 437
BsgI GTGCAG 1 cut(s) 358
BshFI GGCC 1 cut(s) 67
BsiSI CCGG 1 cut(s) 389
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 164
BsmI GAATGC 1 cut(s) 278
BsnI GGCC 1 cut(s) 67
BspACI CCGC 2 cut(s) 200, 414
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 1 cut(s) 387
BspMAI CTGCAG 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 232
Bst4CI ACNGT 1 cut(s) 267
BstBAI YACGTR 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 374
BstF5I GGATG 6 cut(s) 61, 143, 154, 167, 384, 427
BstNSI RCATGY 2 cut(s) 116, 225
BstSCI CCNGG 1 cut(s) 387
BstSFI CTRYAG 2 cut(s) 12, 183
BstV1I GCAGC 4 cut(s) 242, 351, 354, 437
BsuRI GGCC 1 cut(s) 67
BtsCI GGATG 6 cut(s) 61, 143, 154, 167, 384, 427
BtsIMutI CAGTG 1 cut(s) 263
Cac8I GCNNGC 1 cut(s) 202
Csp6I GTAC 2 cut(s) 251, 409
CviAII CATG 4 cut(s) 113, 222, 270, 331
CviJI RGCY 4 cut(s) 67, 233, 352, 392
CviKI_1 RGCY 4 cut(s) 67, 233, 352, 392
CviQI GTAC 2 cut(s) 251, 409
DdeI CTNAG 1 cut(s) 374
EaeI YGGCCR 1 cut(s) 65
Eco57I CTGAAG 1 cut(s) 320
EcoRI GAATTC 1 cut(s) 59
FaeI CATG 4 cut(s) 116, 225, 273, 334
FaiI YATR 6 cut(s) 98, 114, 185, 223, 271, 332
FaqI GGGAC 1 cut(s) 164
FatI CATG 4 cut(s) 112, 221, 269, 330
FauI CCCGC 1 cut(s) 193
FblI GTMKAC 2 cut(s) 285, 402
Fnu4HI GCNGC 4 cut(s) 231, 340, 343, 426
FokI GGATG 6 cut(s) 68, 130, 141, 154, 371, 434
Fsp4HI GCNGC 4 cut(s) 231, 340, 343, 426
GluI GCNGC 4 cut(s) 231, 340, 343, 426
HaeIII GGCC 1 cut(s) 67
HapII CCGG 1 cut(s) 389
Hin1II CATG 4 cut(s) 116, 225, 273, 334
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 2 cut(s) 260, 363
HpaII CCGG 1 cut(s) 389
HphI GGTGA 2 cut(s) 392, 428
Hpy166II GTNNAC 3 cut(s) 118, 286, 403
Hpy188I TCNGA 3 cut(s) 300, 308, 377
Hpy8I GTNNAC 3 cut(s) 118, 286, 403
Hpy99I CGWCG 2 cut(s) 287, 290
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 1 cut(s) 267
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 5 cut(s) 14, 225, 230, 339, 425
HpyF3I CTNAG 1 cut(s) 374
HpySE526I ACGT 1 cut(s) 253
Hsp92II CATG 4 cut(s) 116, 225, 273, 334
LpnPI CCDG 7 cut(s) 24, 48, 49, 60, 184, 190, 402
Lsp1109I GCAGC 4 cut(s) 242, 351, 354, 437
LweI GCATC 1 cut(s) 412
MaeII ACGT 1 cut(s) 253
MaeIII GTNAC 1 cut(s) 380
MlsI TGGCCA 1 cut(s) 67
MluCI AATT 3 cut(s) 44, 59, 369
MluNI TGGCCA 1 cut(s) 67
MlyI GAGTC 1 cut(s) 372
MmeI TCCRAC 1 cut(s) 286
MnlI CCTC 4 cut(s) 34, 253, 371, 412
Mox20I TGGCCA 1 cut(s) 67
MroXI GAANNNNTTC 2 cut(s) 83, 278
MscI TGGCCA 1 cut(s) 67
MseI TTAA 1 cut(s) 445
MslI CAYNNNNRTG 1 cut(s) 268
Msp20I TGGCCA 1 cut(s) 67
MspA1I CMGCKG 1 cut(s) 414
MspI CCGG 1 cut(s) 389
MspR9I CCNGG 1 cut(s) 389
Mva1269I GAATGC 1 cut(s) 278
NciI CCSGG 1 cut(s) 389
NlaIII CATG 4 cut(s) 116, 225, 273, 334
NmuCI GTSAC 1 cut(s) 380
NspI RCATGY 2 cut(s) 116, 225
PciI ACATGT 1 cut(s) 112
PctI GAATGC 1 cut(s) 278
PdmI GAANNNNTTC 2 cut(s) 83, 278
PfeI GAWTC 1 cut(s) 260
PkrI GCNGC 4 cut(s) 232, 341, 344, 427
PleI GAGTC 1 cut(s) 371
PpsI GAGTC 1 cut(s) 371
Ppu21I YACGTR 1 cut(s) 254
PscI ACATGT 1 cut(s) 112
PstI CTGCAG 1 cut(s) 16
RsaI GTAC 2 cut(s) 252, 410
RsaNI GTAC 2 cut(s) 251, 409
RseI CAYNNNNRTG 1 cut(s) 268
SalI GTCGAC 1 cut(s) 284
SaqAI TTAA 1 cut(s) 445
SatI GCNGC 4 cut(s) 231, 340, 343, 426
SchI GAGTC 1 cut(s) 372
ScrFI CCNGG 1 cut(s) 389
SetI ASST 6 cut(s) 85, 245, 256, 306, 354, 382
SfaNI GCATC 1 cut(s) 412
SfcI CTRYAG 2 cut(s) 12, 183
SgrDI CGTCGACG 1 cut(s) 284
SmiMI CAYNNNNRTG 1 cut(s) 268
Sse9I AATT 3 cut(s) 44, 59, 369
SsiI CCGC 2 cut(s) 200, 414
StyD4I CCNGG 1 cut(s) 387
TaaI ACNGT 1 cut(s) 267
TaiI ACGT 1 cut(s) 256
TaqI TCGA 1 cut(s) 285
TasI AATT 3 cut(s) 44, 59, 369
TatI WGTACW 1 cut(s) 408
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 1 cut(s) 445
Tru9I TTAA 1 cut(s) 445
TscAI CASTG 1 cut(s) 270
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 4 cut(s) 230, 339, 342, 425
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 1 cut(s) 72
TspRI CASTG 1 cut(s) 270
XapI RAATTY 2 cut(s) 59, 369
XceI RCATGY 2 cut(s) 116, 225
XmiI GTMKAC 2 cut(s) 285, 402
XmnI GAANNNNTTC 2 cut(s) 83, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.