RchiOBHm_Chr1g0342511

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000623
Physical Location & Seq
Reverse (-)
34371661 .. 34372646
986 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56913

Sequence Viewer

Length: 369 bp
ATGGAAGACTCGGCACAATCCAGAGCAACTCCCACAATTGAATTGCATGGCGATGAATTCTGGCCACTTTCAGGGAAACCTTTCTTTGATATCATATTCACAAAATCCCATGTCAAACCCCTTTACCAAATGGAGATCCCAGCCAAACTTGATCCAGTATTACCTGCTGGTGCTTCAGTCCCCATGGTTCTCAACTTTGGGGACAAGAGCTGGGAGATGACATATAATGAAACAAAACGTCTCAAATTAATGGATCGACACTCGTGGAGAGCATTCGTCGATGACAACAGTCTGAAGGCTGGAGATGGATGTATTTTCGAACTCACTGGATGTGACACTCCAAATCCTCAGAGGAGACATCCCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

122

Amino Acids

13.85

Weight (kDa)

5.75

Isoelectric Point (pI)

35.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 31 - 110 1.5e-08 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000623)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35581 FvH4_6g35581 FvH4_6g35582 FvH4_7g07710 FvH4_7g07720
malus_domestica MD02G1233300.v1.1 MD07G1080300.v1.1
prunus_persica Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G100300_v2.0.a1 Prupe.2G104300_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1 Prupe.2G104700_v2.0.a1
pyrus_communis pycom02g20150 pycom07g06390
rosa_chinensis RchiOBHm_Chr1g0342371 RchiOBHm_Chr1g0342381 RchiOBHm_Chr1g0342401 RchiOBHm_Chr1g0342491 RchiOBHm_Chr1g0342511 RchiOBHm_Chr2g0147401 RchiOBHm_Chr2g0147411
rosa_laevigata RLG00000020253 RLG00000020259 RLG00000029157 RLG00000029158
rosa_multiflora Rmu_sc0000979.1_g000010 Rmu_sc0001159.1_g000034 Rmu_sc0001159.1_g000035 Rmu_sc0005388.1_g000001 Rmu_sc0009535.1_g000001 Rmu_sc0009535.1_g000003 Rmu_sc0011976.1_g000004 Rmu_sc0011976.1_g000005 Rmu_sc0027133.1_g000002
rosa_roxburghii Rroxscaffold_2G00099550 Rroxscaffold_2G00099560 Rroxscaffold_4G00296180 Rroxscaffold_4G00312990 Rroxscaffold_4G00313010 Rroxscaffold_4G00313030 Rroxscaffold_4G00313060
rosa_rugosa Rorug01G0150600.1 Rorug01G0150700.1 Rorug01G0150800.1 Rorug01G0150900.1 Rorug01G0151000.1 Rorug01G0151100.1 Rorug01G0151200.1 Rorug01G0151300.1 Rorug01G0151400.1 Rorug02G0399500 Rorug02G0399600 Rorug02G0399700 Rorug02G0399800 Rorug02G0399800 Rorug02G0399900
rosa_samantha Rh1AG165800 Rh1AG165900 Rh1BG132300 Rh1BG132400 Rh1CG154400 Rh1CG154500 Rh1DG167200 Rh1DG167300 Rh2AG456600 Rh2AG456700 Rh2BG469100 Rh2CG444100 Rh2CG444200 Rh2DG478400 Rh2DG478500
rosa_wichuraiana Rw1G013810 Rw1G013820 Rw1G013860 Rw2G037370 Rw2G037380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 172
AclWI GGATC 3 cut(s) 130, 146, 261
AcoI YGGCCR 1 cut(s) 62
AcsI RAATTY 1 cut(s) 56
AcuI CTGAAG 2 cut(s) 159, 314
AfiI CCNNNNNNNGG 1 cut(s) 71
AgsI TTSAA 1 cut(s) 41
AluBI AGCT 2 cut(s) 210, 366
AluI AGCT 2 cut(s) 210, 366
Alw26I GTCTC 2 cut(s) 245, 349
AlwI GGATC 3 cut(s) 130, 146, 261
AoxI GGCC 1 cut(s) 62
ApoI RAATTY 1 cut(s) 56
AseI ATTAAT 1 cut(s) 248
Asp700I GAANNNNTTC 1 cut(s) 80
AsuII TTCGAA 1 cut(s) 318
BalI TGGCCA 1 cut(s) 64
BauI CACGAG 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 12
BccI CCATC 1 cut(s) 299
BcoDI GTCTC 2 cut(s) 245, 349
BfuAI ACCTGC 1 cut(s) 172
BoxI GACNNNNGTC 1 cut(s) 288
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 321
Bpu14I TTCGAA 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 183
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse1I ACTGG 2 cut(s) 155, 331
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 3 cut(s) 314, 335, 358
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMII CTCAG 1 cut(s) 362
BseNI ACTGG 2 cut(s) 155, 331
BseRI GAGGAG 1 cut(s) 367
BseYI CCCAGC 3 cut(s) 139, 210, 362
BshFI GGCC 1 cut(s) 64
BslFI GGGAC 2 cut(s) 164, 215
BslI CCNNNNNNNGG 1 cut(s) 71
BsmAI GTCTC 2 cut(s) 245, 349
BsmBI CGTCTC 1 cut(s) 245
BsmFI GGGAC 2 cut(s) 164, 215
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 1 cut(s) 64
Bsp119I TTCGAA 1 cut(s) 318
Bsp143I GATC 3 cut(s) 135, 151, 253
Bsp19I CCATGG 1 cut(s) 183
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 1 cut(s) 361
BspMI ACCTGC 1 cut(s) 172
BspPI GGATC 3 cut(s) 130, 146, 261
BspT104I TTCGAA 1 cut(s) 318
BsrI ACTGG 2 cut(s) 155, 331
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 3 cut(s) 135, 151, 253
BssSI CACGAG 1 cut(s) 262
BssT1I CCWWGG 1 cut(s) 183
Bst2BI CACGAG 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 290
BstBI TTCGAA 1 cut(s) 318
BstDEI CTNAG 1 cut(s) 348
BstDSI CCRYGG 1 cut(s) 183
BstF5I GGATG 3 cut(s) 314, 335, 358
BstKTI GATC 3 cut(s) 138, 154, 256
BstMAI GTCTC 2 cut(s) 245, 349
BstMBI GATC 3 cut(s) 135, 151, 253
BstPAI GACNNNNGTC 1 cut(s) 288
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 135
BstYI RGATCY 1 cut(s) 135
BsuRI GGCC 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 183
BtgZI GCGATG 1 cut(s) 66
BtsCI GGATG 3 cut(s) 314, 335, 358
BtsIMutI CAGTG 1 cut(s) 324
BveI ACCTGC 1 cut(s) 172
CviAII CATG 3 cut(s) 47, 110, 184
CviJI RGCY 5 cut(s) 64, 143, 210, 299, 366
CviKI_1 RGCY 5 cut(s) 64, 143, 210, 299, 366
DdeI CTNAG 1 cut(s) 348
DpnI GATC 3 cut(s) 137, 153, 255
DpnII GATC 3 cut(s) 135, 151, 253
EaeI YGGCCR 1 cut(s) 62
Eco130I CCWWGG 1 cut(s) 183
Eco32I GATATC 1 cut(s) 91
Eco57I CTGAAG 2 cut(s) 159, 314
EcoRI GAATTC 1 cut(s) 56
EcoRV GATATC 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
Esp3I CGTCTC 1 cut(s) 245
FaeI CATG 3 cut(s) 50, 113, 187
FaiI YATR 6 cut(s) 48, 95, 111, 185, 223, 225
FaqI GGGAC 2 cut(s) 164, 215
FatI CATG 3 cut(s) 46, 109, 183
FokI GGATG 3 cut(s) 321, 342, 345
GsaI CCCAGC 3 cut(s) 143, 214, 366
GsuI CTGGAG 1 cut(s) 321
HaeIII GGCC 1 cut(s) 64
Hin1II CATG 3 cut(s) 50, 113, 187
HinfI GANTC 1 cut(s) 8
Hpy188I TCNGA 2 cut(s) 294, 351
Hpy188III TCNNGA 1 cut(s) 21
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 1 cut(s) 46
HpyF3I CTNAG 1 cut(s) 348
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 3 cut(s) 50, 113, 187
Kzo9I GATC 3 cut(s) 135, 151, 253
MaeII ACGT 1 cut(s) 238
MaeIII GTNAC 1 cut(s) 332
MalI GATC 3 cut(s) 137, 153, 255
MboI GATC 3 cut(s) 135, 151, 253
MboII GAAGA 1 cut(s) 17
MfeI CAATTG 1 cut(s) 36
MflI RGATCY 1 cut(s) 135
MlsI TGGCCA 1 cut(s) 64
MluCI AATT 4 cut(s) 36, 41, 56, 245
MluNI TGGCCA 1 cut(s) 64
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 2 cut(s) 345, 357
Mox20I TGGCCA 1 cut(s) 64
MroXI GAANNNNTTC 1 cut(s) 80
MscI TGGCCA 1 cut(s) 64
MseI TTAA 1 cut(s) 248
MslI CAYNNNNRTG 1 cut(s) 51
Msp20I TGGCCA 1 cut(s) 64
MspA1I CMGCKG 1 cut(s) 366
MunI CAATTG 1 cut(s) 36
Mva1269I GAATGC 1 cut(s) 272
NcoI CCATGG 1 cut(s) 183
NdeII GATC 3 cut(s) 135, 151, 253
NlaIII CATG 3 cut(s) 50, 113, 187
NmuCI GTSAC 1 cut(s) 332
NspV TTCGAA 1 cut(s) 318
PctI GAATGC 1 cut(s) 272
PdmI GAANNNNTTC 1 cut(s) 80
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
PshAI GACNNNNGTC 1 cut(s) 288
PshBI ATTAAT 1 cut(s) 248
PspFI CCCAGC 3 cut(s) 139, 210, 362
PsuI RGATCY 1 cut(s) 135
PvuII CAGCTG 1 cut(s) 366
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 1 cut(s) 248
Sau3AI GATC 3 cut(s) 135, 151, 253
SchI GAGTC 1 cut(s) 2
SetI ASST 5 cut(s) 82, 166, 212, 241, 368
SfuI TTCGAA 1 cut(s) 318
SmiMI CAYNNNNRTG 1 cut(s) 51
Sse9I AATT 4 cut(s) 36, 41, 56, 245
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 1 cut(s) 290
TaiI ACGT 1 cut(s) 241
TaqI TCGA 3 cut(s) 256, 279, 318
TasI AATT 4 cut(s) 36, 41, 56, 245
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 1 cut(s) 332
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 2 cut(s) 69, 243
TspRI CASTG 1 cut(s) 331
VspI ATTAAT 1 cut(s) 248
XapI RAATTY 1 cut(s) 56
XmnI GAANNNNTTC 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.