FvH4_7g02790

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001612
Physical Location & Seq
Forward (+)
3107777 .. 3109091
1315 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g02790.t1

Sequence Viewer

Length: 915 bp
ATGGGGCCAAGCAAGAAGCGAAAGTTACCTCACGATGACGAGGCAGTCGACCCAGATCAACAAGGCATTGAGCAACTCCGCGACGTCGTTTCGGTCAGCGGAGTCAATCTTGCGGAGGAGCAAGACCGCATGCTTTCTGGGCCCAACAACAAGGATCGATTTAAGCCTCGAAAACTTGCGTTCCAAGAAAAGGAAGAAGGGCTGGTTTTGGAGAAGAATGCGTTGAGGAGAAAGATGGCGGGGATCATGGGGAGGTGGGGATTTAGAATGGGAGTTGAGAGAGATGTGGAGAGGTGTGTGTCGATGTGTGTGGAGGAGAGAATGAGAGGGATCATATGTAATTTGATTCGAGAGTCGAAACAGCGTGTCGATTGCGAAAAATCTAGGCATTGTAACACTGTGAATACATCTGATGTGAGGCAGGAAATTATGGCTCTGAACAAGAGAGCTAGGGAAGAGTCGCAGGCTGCAGCGGCACGAAAGGCTCAGAAGATTCATGAAGCTAATGGAGTTAAGGATAGAAATGATGATGGGGATGATAGAATGAGGAAAAATAGAGCGGAAGCGAATGTCGCTGCTCGTGCGGCGGTTGGAGGGCATGACATATTGGCAAAGTGGCAACTTAAGGCGGAGCTAGCCCGGCAGAAGAAAGATGTAAACCACAAGGCTGCACCAACTATTGGAAGAACAATGAATGGGAATGTAAATGCGAAGAACAATGATTCGGTGTCTAAAGCTGGGAGTGATGTTGGAAAGTTTGGGAGGAAGGCCGAAGCTATGATGAAGCCTCAAACAAAGGTGGCTAGTATGAGGAGTATATCTGTTAAAGATGTGACTGCTGTTCTCGAAAAGGAACCTCAGTTGTCCAAGTCTACTCTGATCTATTCGCTAATGAACACTGCTAGTCGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

305

Amino Acids

34.05

Weight (kDa)

9.83

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF4 PF05236 26 - 296 1.6e-44 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 44
AatII GACGTC 1 cut(s) 87
AccB7I CCANNNNNTGG 1 cut(s) 680
AccBSI CCGCTC 1 cut(s) 560
AccI GTMKAC 2 cut(s) 48, 872
AccII CGCG 1 cut(s) 81
AclWI GGATC 3 cut(s) 162, 251, 338
AcyI GRCGYC 1 cut(s) 84
AfiI CCNNNNNNNGG 2 cut(s) 190, 680
AflII CTTAAG 1 cut(s) 623
AluBI AGCT 5 cut(s) 449, 503, 634, 737, 776
AluI AGCT 5 cut(s) 449, 503, 634, 737, 776
AlwI GGATC 3 cut(s) 162, 251, 338
AoxI GGCC 3 cut(s) 5, 140, 768
ApaI GGGCCC 1 cut(s) 144
ApeKI GCWGC 4 cut(s) 467, 470, 575, 668
AspS9I GGNCC 3 cut(s) 5, 140, 141
AsuC2I CCSGG 1 cut(s) 640
AsuNHI GCTAGC 1 cut(s) 634
BaeGI GKGCMC 1 cut(s) 144
BanII GRGCYC 1 cut(s) 144
BauI CACGAG 1 cut(s) 579
BbvI GCAGC 4 cut(s) 454, 482, 562, 655
BccI CCATC 2 cut(s) 229, 524
BcnI CCSGG 1 cut(s) 640
BfaI CTAG 5 cut(s) 384, 450, 635, 804, 903
BfmI CTRYAG 1 cut(s) 468
BfrI CTTAAG 1 cut(s) 623
BisI GCNGC 6 cut(s) 468, 471, 474, 576, 585, 669
BlsI GCNGC 6 cut(s) 469, 472, 475, 577, 586, 670
Bme1390I CCNGG 1 cut(s) 640
BmgT120I GGNCC 3 cut(s) 5, 140, 141
BmiI GGNNCC 3 cut(s) 6, 142, 855
BmrFI CCNGG 1 cut(s) 640
BmtI GCTAGC 1 cut(s) 638
BpuMI CCSGG 1 cut(s) 640
Bsa29I ATCGAT 1 cut(s) 157
BsaHI GRCGYC 1 cut(s) 84
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 680
BseCI ATCGAT 1 cut(s) 157
BseGI GGATG 1 cut(s) 541
BseLI CCNNNNNNNGG 2 cut(s) 190, 680
BseMII CTCAG 2 cut(s) 500, 872
BseRI GAGGAG 4 cut(s) 131, 241, 329, 826
BseSI GKGCMC 1 cut(s) 144
BseXI GCAGC 4 cut(s) 454, 482, 562, 655
BseYI CCCAGC 1 cut(s) 737
BsgI GTGCAG 1 cut(s) 654
Bsh1236I CGCG 1 cut(s) 81
BshFI GGCC 3 cut(s) 7, 142, 770
BshVI ATCGAT 1 cut(s) 157
BsiSI CCGG 1 cut(s) 640
BslI CCNNNNNNNGG 2 cut(s) 190, 680
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 3 cut(s) 7, 142, 770
Bsp120I GGGCCC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 5 cut(s) 55, 154, 243, 330, 879
BspANI GGCC 3 cut(s) 7, 142, 770
BspCNI CTCAG 2 cut(s) 499, 871
BspDI ATCGAT 1 cut(s) 157
BspFNI CGCG 1 cut(s) 81
BspHI TCATGA 1 cut(s) 496
BspLI GGNNCC 3 cut(s) 6, 142, 855
BspMAI CTGCAG 1 cut(s) 472
BspOI GCTAGC 1 cut(s) 638
BspPI GGATC 3 cut(s) 162, 251, 338
BspTI CTTAAG 1 cut(s) 623
BsrBI CCGCTC 1 cut(s) 560
BssMI GATC 5 cut(s) 55, 154, 243, 330, 879
BssNI GRCGYC 1 cut(s) 84
BssSI CACGAG 1 cut(s) 579
Bst2BI CACGAG 1 cut(s) 579
Bst4CI ACNGT 1 cut(s) 400
Bst6I CTCTTC 1 cut(s) 450
BstACI GRCGYC 1 cut(s) 84
BstAFI CTTAAG 1 cut(s) 623
BstC8I GCNNGC 3 cut(s) 131, 465, 636
BstDEI CTNAG 2 cut(s) 486, 858
BstF5I GGATG 1 cut(s) 541
BstFNI CGCG 1 cut(s) 81
BstKTI GATC 5 cut(s) 58, 157, 246, 333, 882
BstMBI GATC 5 cut(s) 55, 154, 243, 330, 879
BstMWI GCNNNNNNNGC 8 cut(s) 139, 473, 482, 572, 581, 584, 635, 640
BstNSI RCATGY 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 638
BstSFI CTRYAG 1 cut(s) 468
BstSLI GKGCMC 1 cut(s) 144
BstUI CGCG 1 cut(s) 81
BstV1I GCAGC 4 cut(s) 454, 482, 562, 655
Bsu15I ATCGAT 1 cut(s) 157
BsuRI GGCC 3 cut(s) 7, 142, 770
BsuTUI ATCGAT 1 cut(s) 157
BtsCI GGATG 1 cut(s) 541
BtsI GCAGTG 1 cut(s) 897
BtsIMutI CAGTG 2 cut(s) 396, 897
Cac8I GCNNGC 3 cut(s) 131, 465, 636
CciI TCATGA 1 cut(s) 496
Cfr13I GGNCC 3 cut(s) 5, 140, 141
ClaI ATCGAT 1 cut(s) 157
CviAII CATG 4 cut(s) 130, 247, 497, 599
DdeI CTNAG 2 cut(s) 486, 858
DpnI GATC 5 cut(s) 57, 156, 245, 332, 881
DpnII GATC 5 cut(s) 55, 154, 243, 330, 879
DrdI GACNNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 1 cut(s) 44
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
EciI GGCGGA 1 cut(s) 644
Eco24I GRGCYC 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 144
FaeI CATG 4 cut(s) 133, 250, 500, 602
FatI CATG 4 cut(s) 129, 246, 496, 598
FauI CCCGC 1 cut(s) 232
FauNDI CATATG 1 cut(s) 335
FblI GTMKAC 2 cut(s) 48, 872
Fnu4HI GCNGC 6 cut(s) 468, 471, 474, 576, 585, 669
FokI GGATG 1 cut(s) 548
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 6 cut(s) 468, 471, 474, 576, 585, 669
FspBI CTAG 5 cut(s) 384, 450, 635, 804, 903
GluI GCNGC 6 cut(s) 468, 471, 474, 576, 585, 669
GsaI CCCAGC 1 cut(s) 741
HaeIII GGCC 3 cut(s) 7, 142, 770
HapII CCGG 1 cut(s) 640
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 4 cut(s) 133, 250, 500, 602
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 6 cut(s) 102, 346, 353, 458, 493, 722
HpaII CCGG 1 cut(s) 640
Hpy166II GTNNAC 3 cut(s) 49, 658, 873
Hpy188I TCNGA 4 cut(s) 412, 438, 489, 879
Hpy188III TCNNGA 4 cut(s) 32, 350, 497, 845
Hpy8I GTNNAC 3 cut(s) 49, 658, 873
Hpy99I CGWCG 2 cut(s) 86, 89
HpyAV CCTTC 3 cut(s) 191, 760, 903
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 2 cut(s) 470, 671
HpyF10VI GCNNNNNNNGC 8 cut(s) 139, 473, 482, 572, 581, 584, 635, 640
HpyF3I CTNAG 2 cut(s) 486, 858
HpySE526I ACGT 1 cut(s) 84
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 4 cut(s) 133, 250, 500, 602
Kzo9I GATC 5 cut(s) 55, 154, 243, 330, 879
LmnI GCTCC 2 cut(s) 118, 631
LpnPI CCDG 7 cut(s) 66, 123, 188, 407, 449, 653, 723
Lsp1109I GCAGC 4 cut(s) 454, 482, 562, 655
MaeI CTAG 5 cut(s) 384, 450, 635, 804, 903
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 3 cut(s) 24, 392, 832
MalI GATC 5 cut(s) 57, 156, 245, 332, 881
MbiI CCGCTC 1 cut(s) 560
MboI GATC 5 cut(s) 55, 154, 243, 330, 879
MboII GAAGA 7 cut(s) 206, 226, 467, 502, 658, 696, 724
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 2 cut(s) 340, 426
MlyI GAGTC 3 cut(s) 111, 362, 467
MmeI TCCRAC 2 cut(s) 571, 730
MseI TTAA 4 cut(s) 162, 513, 624, 825
MspA1I CMGCKG 2 cut(s) 99, 473
MspCI CTTAAG 1 cut(s) 623
MspI CCGG 1 cut(s) 640
MspR9I CCNGG 1 cut(s) 640
Mva1269I GAATGC 1 cut(s) 223
MvnI CGCG 1 cut(s) 81
MwoI GCNNNNNNNGC 8 cut(s) 139, 473, 482, 572, 581, 584, 635, 640
NciI CCSGG 1 cut(s) 640
NdeI CATATG 1 cut(s) 335
NdeII GATC 5 cut(s) 55, 154, 243, 330, 879
NheI GCTAGC 1 cut(s) 634
NlaIII CATG 4 cut(s) 133, 250, 500, 602
NlaIV GGNNCC 3 cut(s) 6, 142, 855
NmuCI GTSAC 1 cut(s) 832
NspI RCATGY 1 cut(s) 133
PaeI GCATGC 1 cut(s) 133
PagI TCATGA 1 cut(s) 496
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 3 cut(s) 346, 493, 722
PflMI CCANNNNNTGG 1 cut(s) 680
PkrI GCNGC 6 cut(s) 469, 472, 475, 577, 586, 670
PleI GAGTC 3 cut(s) 110, 361, 466
PpsI GAGTC 3 cut(s) 110, 361, 466
PspFI CCCAGC 1 cut(s) 737
PspN4I GGNNCC 3 cut(s) 6, 142, 855
PspOMI GGGCCC 1 cut(s) 140
PspPI GGNCC 3 cut(s) 5, 140, 141
PstI CTGCAG 1 cut(s) 472
SalI GTCGAC 1 cut(s) 47
SaqAI TTAA 4 cut(s) 162, 513, 624, 825
SatI GCNGC 6 cut(s) 468, 471, 474, 576, 585, 669
Sau3AI GATC 5 cut(s) 55, 154, 243, 330, 879
Sau96I GGNCC 3 cut(s) 5, 140, 141
SchI GAGTC 3 cut(s) 111, 362, 467
ScrFI CCNGG 1 cut(s) 640
SduI GDGCHC 1 cut(s) 144
SfcI CTRYAG 1 cut(s) 468
SmlI CTYRAG 1 cut(s) 623
SmoI CTYRAG 1 cut(s) 623
SphI GCATGC 1 cut(s) 133
Sse9I AATT 2 cut(s) 340, 426
SspMI CTAG 5 cut(s) 384, 450, 635, 804, 903
StyD4I CCNGG 1 cut(s) 638
TaaI ACNGT 1 cut(s) 400
TaiI ACGT 1 cut(s) 87
TaqI TCGA 9 cut(s) 48, 157, 169, 302, 349, 356, 369, 846, 907
TaqII GACCGA 1 cut(s) 82
TasI AATT 2 cut(s) 340, 426
TauI GCSGC 2 cut(s) 476, 587
TfiI GAWTC 3 cut(s) 346, 493, 722
Tru1I TTAA 4 cut(s) 162, 513, 624, 825
Tru9I TTAA 4 cut(s) 162, 513, 624, 825
TscAI CASTG 2 cut(s) 403, 904
TseFI GTSAC 1 cut(s) 832
TseI GCWGC 4 cut(s) 467, 470, 575, 668
Tsp45I GTSAC 1 cut(s) 832
TspDTI ATGAA 5 cut(s) 485, 513, 707, 797, 908
TspRI CASTG 2 cut(s) 403, 904
Van91I CCANNNNNTGG 1 cut(s) 680
Vha464I CTTAAG 1 cut(s) 623
XceI RCATGY 1 cut(s) 133
XmiI GTMKAC 2 cut(s) 48, 872
XspI CTAG 5 cut(s) 384, 450, 635, 804, 903
ZraI GACGTC 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.