Rw1G004650

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001612
Physical Location & Seq
Forward (+)
8946698 .. 8947667
970 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G004650.1

Sequence Viewer

Length: 897 bp
ATGGGGTTTTCACCATTCTTCCCAAACCCTCTGTTTCCTCCTGTCAAAAATCCTAACAAGCGTCGTGCTTCACCGCCACCAAGTAAGAAGCAAAAGGTAGCTGATGATGAGATCGACACAGATCAAGAAGGCATTGAGCAACTCCGCGACGTCGTTTCTGTCAGTGGAGTCAATCTTGTGGAAGAGCAAGAGCGCATGCTGTTGCTTTCGGGGCCCAAGAATCAGCAAGCATCTCGAAAACTTGTGTTTCAAGAAAACCAAGAAGGGCAGGTTTTGCAGAAGATTCCCCTGCAGAAAAAGTTGGCAGAAGTGATGGGGAGGTGCGGTTTGAGAATTGGTGTAGACAAAGATGTGGAGAGATGCTTGTCAATGTGTGTGGAGGAGAGAATGAGGGGGATCATTTGCAATTTGATTAGACAGTCGAAGCAGCGGGTTGATTGCGAAAAATTGAGACACCACACTGTTTCTACATCTGATGTGAAGCAAGAGATTATGATTCTCAACAGGAAAGCTGGGGAAGAGTTGCTGGAAAAGGCTCAGAAGCTTAATGAAGCTAAGCAGCAGCAAATGGCGAAATGGAAACTTAAGGCGGATCAGCTATCGCGGGAGAAGCGTCGAGGTAAAGATGTAAACCCCCAGGCTACATCAACTGCTGGAAGAACAATGAATGGCAATGTAGAAGCGGAGAAAAGGGGCGGTGTAGAAGCTTTGGTGTCTGCAGCTGGGAGTGCTGTTGGAAAGTATGGGAGGAATGCCCAAGTTATGATGATGCCTCAAACAAAGGTGGCTAGTACTGGTAGTATATCTGTCAAGGATGTGATTGCTGTTCTGGAAAAGGAACCTCAGGTGTCCAAGTCTACTCTGATATATTTGCTAATGAACACTGCTAGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

298

Amino Acids

33.22

Weight (kDa)

9.61

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF4 PF05236 48 - 290 5.5e-41 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 153
Acc36I ACCTGC 1 cut(s) 259
AccI GTMKAC 2 cut(s) 342, 857
AccII CGCG 2 cut(s) 147, 604
AciI CCGC 8 cut(s) 74, 145, 324, 430, 590, 604, 683, 696
AclWI GGATC 2 cut(s) 404, 600
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 1 cut(s) 793
AflII CTTAAG 1 cut(s) 584
AgsI TTSAA 1 cut(s) 251
AjnI CCWGG 1 cut(s) 636
AluBI AGCT 7 cut(s) 101, 512, 544, 554, 598, 707, 722
AluI AGCT 7 cut(s) 101, 512, 544, 554, 598, 707, 722
Alw26I GTCTC 1 cut(s) 445
AlwI GGATC 2 cut(s) 404, 600
AoxI GGCC 1 cut(s) 212
ApaI GGGCCC 1 cut(s) 216
ApeKI GCWGC 4 cut(s) 427, 559, 562, 719
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 2 cut(s) 212, 213
AsuHPI GGTGA 2 cut(s) 3, 63
AsuNHI GCTAGC 1 cut(s) 887
AxyI CCTNAGG 1 cut(s) 843
BaeGI GKGCMC 1 cut(s) 216
BanII GRGCYC 1 cut(s) 216
BbvI GCAGC 4 cut(s) 439, 571, 574, 731
BccI CCATC 1 cut(s) 307
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BciT130I CCWGG 1 cut(s) 638
BcoDI GTCTC 1 cut(s) 445
BfaI CTAG 2 cut(s) 789, 888
BfmI CTRYAG 2 cut(s) 290, 717
BfrI CTTAAG 1 cut(s) 584
BfuAI ACCTGC 1 cut(s) 259
BisI GCNGC 4 cut(s) 428, 560, 563, 720
BlpI GCTNAGC 1 cut(s) 555
BlsI GCNGC 4 cut(s) 429, 561, 564, 721
BmcAI AGTACT 1 cut(s) 793
Bme1390I CCNGG 1 cut(s) 638
BmgT120I GGNCC 2 cut(s) 212, 213
BmiI GGNNCC 3 cut(s) 213, 214, 840
BmrFI CCNGG 1 cut(s) 638
BmsI GCATC 3 cut(s) 239, 350, 759
BmtI GCTAGC 1 cut(s) 891
Bpu1102I GCTNAGC 1 cut(s) 555
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 636
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
Bse118I RCCGGY 1 cut(s) 891
Bse1I ACTGG 1 cut(s) 799
Bse21I CCTNAGG 1 cut(s) 843
Bse3DI GCAATG 1 cut(s) 679
BseBI CCWGG 1 cut(s) 638
BseDI CCNNGG 1 cut(s) 636
BseGI GGATG 1 cut(s) 820
BseMI GCAATG 1 cut(s) 679
BseMII CTCAG 2 cut(s) 551, 857
BseNI ACTGG 1 cut(s) 799
BseRI GAGGAG 1 cut(s) 395
BseSI GKGCMC 1 cut(s) 216
BseXI GCAGC 4 cut(s) 439, 571, 574, 731
BseYI CCCAGC 2 cut(s) 512, 722
Bsh1236I CGCG 2 cut(s) 147, 604
BshFI GGCC 1 cut(s) 214
BsiSI CCGG 1 cut(s) 892
BsmAI GTCTC 1 cut(s) 445
BsmI GAATGC 1 cut(s) 757
BsnI GGCC 1 cut(s) 214
Bsp120I GGGCCC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 4 cut(s) 111, 121, 396, 592
Bsp1720I GCTNAGC 1 cut(s) 555
BspACI CCGC 8 cut(s) 74, 145, 324, 430, 590, 604, 683, 696
BspANI GGCC 1 cut(s) 214
BspCNI CTCAG 2 cut(s) 550, 856
BspFNI CGCG 2 cut(s) 147, 604
BspLI GGNNCC 3 cut(s) 213, 214, 840
BspMAI CTGCAG 2 cut(s) 294, 721
BspMI ACCTGC 1 cut(s) 259
BspOI GCTAGC 1 cut(s) 891
BspPI GGATC 2 cut(s) 404, 600
BspQI GCTCTTC 1 cut(s) 177
BspTI CTTAAG 1 cut(s) 584
BsrDI GCAATG 1 cut(s) 679
BsrFI RCCGGY 1 cut(s) 891
BsrI ACTGG 1 cut(s) 799
BssAI RCCGGY 1 cut(s) 891
BssECI CCNNGG 1 cut(s) 636
BssMI GATC 4 cut(s) 111, 121, 396, 592
BssNI GRCGYC 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 638
Bst4CI ACNGT 2 cut(s) 420, 463
Bst6I CTCTTC 2 cut(s) 177, 513
BstACI GRCGYC 1 cut(s) 150
BstAFI CTTAAG 1 cut(s) 584
BstAPI GCANNNNNTGC 1 cut(s) 274
BstC8I GCNNGC 3 cut(s) 197, 228, 889
BstDEI CTNAG 3 cut(s) 537, 555, 843
BstF5I GGATG 1 cut(s) 820
BstFNI CGCG 2 cut(s) 147, 604
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 4 cut(s) 114, 124, 399, 595
BstMAI GTCTC 1 cut(s) 445
BstMBI GATC 4 cut(s) 111, 121, 396, 592
BstMWI GCNNNNNNNGC 4 cut(s) 211, 274, 610, 728
BstNI CCWGG 1 cut(s) 638
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 636
BstSFI CTRYAG 2 cut(s) 290, 717
BstSLI GKGCMC 1 cut(s) 216
BstUI CGCG 2 cut(s) 147, 604
BstV1I GCAGC 4 cut(s) 439, 571, 574, 731
Bsu36I CCTNAGG 1 cut(s) 843
BsuRI GGCC 1 cut(s) 214
BtsCI GGATG 1 cut(s) 820
BtsI GCAGTG 1 cut(s) 882
BtsIMutI CAGTG 3 cut(s) 169, 459, 882
BveI ACCTGC 1 cut(s) 259
Cac8I GCNNGC 3 cut(s) 197, 228, 889
CfoI GCGC 1 cut(s) 195
Cfr10I RCCGGY 1 cut(s) 891
Cfr13I GGNCC 2 cut(s) 212, 213
CseI GACGC 2 cut(s) 50, 602
Csp6I GTAC 1 cut(s) 792
CspCI CAANNNNNGTGG 2 cut(s) 357, 392
CviAII CATG 1 cut(s) 196
CviQI GTAC 1 cut(s) 792
DdeI CTNAG 3 cut(s) 537, 555, 843
DpnI GATC 4 cut(s) 113, 123, 398, 594
DpnII GATC 4 cut(s) 111, 121, 396, 592
Eam1104I CTCTTC 2 cut(s) 177, 513
EarI CTCTTC 2 cut(s) 177, 513
EciI GGCGGA 1 cut(s) 605
Eco24I GRGCYC 1 cut(s) 216
Eco81I CCTNAGG 1 cut(s) 843
EcoO109I RGGNCCY 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 636
EcoT38I GRGCYC 1 cut(s) 216
FaeI CATG 1 cut(s) 199
FaiI YATR 6 cut(s) 197, 494, 744, 764, 803, 868
FatI CATG 1 cut(s) 195
FauI CCCGC 2 cut(s) 423, 597
FblI GTMKAC 2 cut(s) 342, 857
Fnu4HI GCNGC 4 cut(s) 428, 560, 563, 720
FokI GGATG 1 cut(s) 827
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 4 cut(s) 428, 560, 563, 720
FspBI CTAG 2 cut(s) 789, 888
GlaI GCGC 1 cut(s) 194
GluI GCNGC 4 cut(s) 428, 560, 563, 720
GsaI CCCAGC 2 cut(s) 516, 726
HaeIII GGCC 1 cut(s) 214
HapII CCGG 1 cut(s) 892
HgaI GACGC 2 cut(s) 50, 602
HhaI GCGC 1 cut(s) 195
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 1 cut(s) 199
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HindIII AAGCTT 2 cut(s) 542, 705
HinfI GANTC 4 cut(s) 168, 220, 283, 496
HpaII CCGG 1 cut(s) 892
HphI GGTGA 2 cut(s) 3, 63
Hpy166II GTNNAC 3 cut(s) 343, 631, 858
Hpy188I TCNGA 3 cut(s) 475, 540, 864
Hpy188III TCNNGA 4 cut(s) 125, 234, 251, 830
Hpy8I GTNNAC 3 cut(s) 343, 631, 858
Hpy99I CGWCG 4 cut(s) 66, 152, 155, 618
HpyAV CCTTC 2 cut(s) 122, 257
HpyCH4III ACNGT 2 cut(s) 420, 463
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 4 cut(s) 277, 292, 405, 719
HpyF10VI GCNNNNNNNGC 4 cut(s) 211, 274, 610, 728
HpyF3I CTNAG 3 cut(s) 537, 555, 843
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 1 cut(s) 199
HspAI GCGC 1 cut(s) 193
Kzo9I GATC 4 cut(s) 111, 121, 396, 592
LguI GCTCTTC 1 cut(s) 177
Lsp1109I GCAGC 4 cut(s) 439, 571, 574, 731
LweI GCATC 3 cut(s) 239, 350, 759
MaeI CTAG 2 cut(s) 789, 888
MaeII ACGT 1 cut(s) 150
MalI GATC 4 cut(s) 113, 123, 398, 594
MboI GATC 4 cut(s) 111, 121, 396, 592
MboII GAAGA 5 cut(s) 10, 194, 292, 530, 669
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 3 cut(s) 333, 406, 446
MlyI GAGTC 1 cut(s) 177
MmeI TCCRAC 1 cut(s) 715
MnlI CCTC 9 cut(s) 39, 48, 312, 373, 384, 611, 741, 783, 852
MseI TTAA 2 cut(s) 546, 585
MspA1I CMGCKG 2 cut(s) 430, 722
MspCI CTTAAG 1 cut(s) 584
MspI CCGG 1 cut(s) 892
MspR9I CCNGG 1 cut(s) 638
Mva1269I GAATGC 1 cut(s) 757
MvaI CCWGG 1 cut(s) 638
MvnI CGCG 2 cut(s) 147, 604
MwoI GCNNNNNNNGC 4 cut(s) 211, 274, 610, 728
NdeII GATC 4 cut(s) 111, 121, 396, 592
NheI GCTAGC 1 cut(s) 887
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 3 cut(s) 213, 214, 840
NspI RCATGY 1 cut(s) 199
PaeI GCATGC 1 cut(s) 199
PciSI GCTCTTC 1 cut(s) 177
PctI GAATGC 1 cut(s) 757
PfeI GAWTC 3 cut(s) 220, 283, 496
PkrI GCNGC 4 cut(s) 429, 561, 564, 721
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 636
PspFI CCCAGC 2 cut(s) 512, 722
PspGI CCWGG 1 cut(s) 636
PspN4I GGNNCC 3 cut(s) 213, 214, 840
PspOMI GGGCCC 1 cut(s) 212
PspPI GGNCC 2 cut(s) 212, 213
PstI CTGCAG 2 cut(s) 294, 721
PvuII CAGCTG 1 cut(s) 722
RsaI GTAC 1 cut(s) 793
RsaNI GTAC 1 cut(s) 792
SapI GCTCTTC 1 cut(s) 177
SaqAI TTAA 2 cut(s) 546, 585
SatI GCNGC 4 cut(s) 428, 560, 563, 720
Sau3AI GATC 4 cut(s) 111, 121, 396, 592
Sau96I GGNCC 2 cut(s) 212, 213
ScaI AGTACT 1 cut(s) 793
SchI GAGTC 1 cut(s) 177
ScrFI CCNGG 1 cut(s) 638
SduI GDGCHC 1 cut(s) 216
SfaNI GCATC 3 cut(s) 239, 350, 759
SfcI CTRYAG 2 cut(s) 290, 717
SmlI CTYRAG 1 cut(s) 584
SmoI CTYRAG 1 cut(s) 584
SphI GCATGC 1 cut(s) 199
Sse9I AATT 3 cut(s) 333, 406, 446
SsiI CCGC 8 cut(s) 74, 145, 324, 430, 590, 604, 683, 696
SspMI CTAG 2 cut(s) 789, 888
StyD4I CCNGG 1 cut(s) 636
TaaI ACNGT 2 cut(s) 420, 463
TaiI ACGT 1 cut(s) 153
TaqI TCGA 4 cut(s) 114, 235, 422, 616
TasI AATT 3 cut(s) 333, 406, 446
TatI WGTACW 1 cut(s) 791
TfiI GAWTC 3 cut(s) 220, 283, 496
Tru1I TTAA 2 cut(s) 546, 585
Tru9I TTAA 2 cut(s) 546, 585
TscAI CASTG 3 cut(s) 169, 466, 889
TseI GCWGC 4 cut(s) 427, 559, 562, 719
TspDTI ATGAA 3 cut(s) 564, 680, 893
TspRI CASTG 3 cut(s) 169, 466, 889
Vha464I CTTAAG 1 cut(s) 584
XceI RCATGY 1 cut(s) 199
XmiI GTMKAC 2 cut(s) 342, 857
XspI CTAG 2 cut(s) 789, 888
ZraI GACGTC 1 cut(s) 151
ZrmI AGTACT 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.