Rh1BG046300

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001612
Physical Location & Seq
Forward (+)
6249829 .. 6250830
1002 bp
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UTR
Exon/CDS
Intron
Rh1BG046300.1

Sequence Viewer

Length: 735 bp
ATGGGGTTTTCACCATTCTTCCCAAACCCTCTGTTTCCTCCTGTCAAAAACCCTAACAAGCGTAGTGCATCTCCGCCACCACAGCCATCAAGTAAGAAGCGAAAGGTAGCTGATGATAAGATCGACACAGATCAAGAAGGCATTGAGCAACTCCGCGATGTCGTTTCTGTCAGTGGAGTTAATCTTATGGAAGAGCAAGAGCGCATGCTGTTGCTTTCGGGGCCTAAGAAGCAGCAAGCATCTCGAAAACTTGTGCTTCAAGAAATCCAAGAACGGCTGGTTTTGCAGAAGATTCCCCTGCAGAAAAAGTTGGCGGGAATCATGGGGAGTTGTGGTTTGAGAATTGGTGTTGACAAAGATGTGGAGAGATGCTTGTCAATGTGTGTGGAGGAGAGAACGAGGGGGATCATGTGCAATTTGATTAGACAGTTGAAGCAGCGGGTTGATTGCGAAAAATCGAGACACCACACTGTTTCTACATCTGATGTGAAGCAAGAGATTATGATTCTCAACAGGAAAGCTAGGGAAGAATTGTTGGAAAAGGCTCAGAAGCTTAATGAAGCTAAGGTTAGCACTAAGGGATTTGAGGGTGTTAAGGATAAACATGGCGATGGAGATGACAAAATGAGAAGTACAGCAGCAGCAAAAGTTGCTGCCCTTGCTGCTCTTGGAGGACATGACATATTGGCGAAATGGAAACTTAAGGCGGATCAGCTATCCCGGGAGAAGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

244

Amino Acids

27.34

Weight (kDa)

9.58

Isoelectric Point (pI)

49.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF4 PF05236 51 - 224 3.5e-31 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 156
AciI CCGC 5 cut(s) 74, 154, 314, 439, 707
AclWI GGATC 2 cut(s) 413, 717
AfaI GTAC 1 cut(s) 634
AflII CTTAAG 1 cut(s) 701
AgsI TTSAA 2 cut(s) 260, 433
AluBI AGCT 5 cut(s) 110, 521, 553, 563, 715
AluI AGCT 5 cut(s) 110, 521, 553, 563, 715
Alw26I GTCTC 1 cut(s) 454
AlwI GGATC 2 cut(s) 413, 717
Ama87I CYCGRG 1 cut(s) 720
AoxI GGCC 1 cut(s) 221
ApeKI GCWGC 6 cut(s) 232, 436, 638, 641, 653, 662
AspLEI GCGC 1 cut(s) 204
AspS9I GGNCC 1 cut(s) 221
AsuC2I CCSGG 2 cut(s) 721, 722
AsuHPI GGTGA 1 cut(s) 3
AvaI CYCGRG 1 cut(s) 720
BbvI GCAGC 6 cut(s) 244, 448, 640, 649, 650, 653
BccI CCATC 2 cut(s) 94, 605
BceAI ACGGC 1 cut(s) 290
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BcnI CCSGG 2 cut(s) 721, 722
BcoDI GTCTC 1 cut(s) 454
BfaI CTAG 1 cut(s) 522
BfmI CTRYAG 1 cut(s) 299
BfrI CTTAAG 1 cut(s) 701
BisI GCNGC 6 cut(s) 233, 437, 639, 642, 654, 663
BlsI GCNGC 6 cut(s) 234, 438, 640, 643, 655, 664
Bme1390I CCNGG 2 cut(s) 721, 722
BmeT110I CYCGRG 1 cut(s) 720
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 222
BmrFI CCNGG 2 cut(s) 721, 722
BmsI GCATC 3 cut(s) 77, 248, 359
Bpu10I CCTNAGC 1 cut(s) 564
BpuMI CCSGG 2 cut(s) 721, 722
BsaJI CCNNGG 1 cut(s) 720
BsaXI ACNNNNNCTCC 2 cut(s) 319, 349
BseDI CCNNGG 1 cut(s) 720
BseMII CTCAG 1 cut(s) 560
BseRI GAGGAG 1 cut(s) 404
BseXI GCAGC 6 cut(s) 244, 448, 640, 649, 650, 653
Bsh1236I CGCG 1 cut(s) 156
BshFI GGCC 1 cut(s) 223
BsiHKCI CYCGRG 1 cut(s) 720
BsiSI CCGG 1 cut(s) 721
BsmAI GTCTC 1 cut(s) 454
BsnI GGCC 1 cut(s) 223
BsoBI CYCGRG 1 cut(s) 720
Bsp143I GATC 4 cut(s) 120, 130, 405, 709
BspACI CCGC 5 cut(s) 74, 154, 314, 439, 707
BspANI GGCC 1 cut(s) 223
BspCNI CTCAG 1 cut(s) 559
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 222
BspMAI CTGCAG 1 cut(s) 303
BspPI GGATC 2 cut(s) 413, 717
BspQI GCTCTTC 1 cut(s) 186
BspTI CTTAAG 1 cut(s) 701
BssECI CCNNGG 1 cut(s) 720
BssMI GATC 4 cut(s) 120, 130, 405, 709
Bst4CI ACNGT 2 cut(s) 429, 472
Bst6I CTCTTC 1 cut(s) 186
BstAFI CTTAAG 1 cut(s) 701
BstAPI GCANNNNNTGC 1 cut(s) 650
BstC8I GCNNGC 2 cut(s) 206, 237
BstDEI CTNAG 4 cut(s) 225, 546, 564, 576
BstFNI CGCG 1 cut(s) 156
BstHHI GCGC 1 cut(s) 204
BstKTI GATC 4 cut(s) 123, 133, 408, 712
BstMAI GTCTC 1 cut(s) 454
BstMBI GATC 4 cut(s) 120, 130, 405, 709
BstMWI GCNNNNNNNGC 7 cut(s) 82, 220, 229, 283, 650, 659, 662
BstNSI RCATGY 1 cut(s) 208
BstSCI CCNGG 2 cut(s) 719, 720
BstSFI CTRYAG 1 cut(s) 299
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 6 cut(s) 244, 448, 640, 649, 650, 653
BsuRI GGCC 1 cut(s) 223
BtgZI GCGATG 2 cut(s) 171, 624
BtsIMutI CAGTG 2 cut(s) 178, 468
Cac8I GCNNGC 2 cut(s) 206, 237
CfoI GCGC 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 221
Cfr9I CCCGGG 1 cut(s) 720
Csp6I GTAC 1 cut(s) 633
CspCI CAANNNNNGTGG 2 cut(s) 366, 401
CviAII CATG 5 cut(s) 205, 322, 409, 605, 677
CviJI RGCY 9 cut(s) 85, 110, 223, 277, 521, 545, 553, 563, 715
CviKI_1 RGCY 9 cut(s) 85, 110, 223, 277, 521, 545, 553, 563, 715
CviQI GTAC 1 cut(s) 633
DdeI CTNAG 4 cut(s) 225, 546, 564, 576
DpnI GATC 4 cut(s) 122, 132, 407, 711
DpnII GATC 4 cut(s) 120, 130, 405, 709
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
EciI GGCGGA 2 cut(s) 63, 722
Eco88I CYCGRG 1 cut(s) 720
EcoO109I RGGNCCY 1 cut(s) 221
FaeI CATG 5 cut(s) 208, 325, 412, 608, 680
FaiI YATR 8 cut(s) 188, 206, 323, 410, 503, 606, 678, 683
FatI CATG 5 cut(s) 204, 321, 408, 604, 676
FauI CCCGC 2 cut(s) 307, 432
Fnu4HI GCNGC 6 cut(s) 233, 437, 639, 642, 654, 663
Fsp4HI GCNGC 6 cut(s) 233, 437, 639, 642, 654, 663
FspBI CTAG 1 cut(s) 522
GlaI GCGC 1 cut(s) 203
GluI GCNGC 6 cut(s) 233, 437, 639, 642, 654, 663
HaeIII GGCC 1 cut(s) 223
HapII CCGG 1 cut(s) 721
HhaI GCGC 1 cut(s) 204
Hin1II CATG 5 cut(s) 208, 325, 412, 608, 680
Hin6I GCGC 1 cut(s) 202
HinP1I GCGC 1 cut(s) 202
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HindIII AAGCTT 1 cut(s) 551
HinfI GANTC 3 cut(s) 292, 318, 505
HpaII CCGG 1 cut(s) 721
HphI GGTGA 1 cut(s) 3
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 2 cut(s) 484, 549
Hpy188III TCNNGA 4 cut(s) 134, 243, 260, 459
Hpy8I GTNNAC 1 cut(s) 352
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 2 cut(s) 429, 472
HpyCH4V TGCA 4 cut(s) 68, 286, 301, 414
HpyF10VI GCNNNNNNNGC 7 cut(s) 82, 220, 229, 283, 650, 659, 662
HpyF3I CTNAG 4 cut(s) 225, 546, 564, 576
Hsp92II CATG 5 cut(s) 208, 325, 412, 608, 680
HspAI GCGC 1 cut(s) 202
Kzo9I GATC 4 cut(s) 120, 130, 405, 709
LguI GCTCTTC 1 cut(s) 186
LpnPI CCDG 4 cut(s) 54, 263, 311, 499
Lsp1109I GCAGC 6 cut(s) 244, 448, 640, 649, 650, 653
LweI GCATC 3 cut(s) 77, 248, 359
MaeI CTAG 1 cut(s) 522
MalI GATC 4 cut(s) 122, 132, 407, 711
MboI GATC 4 cut(s) 120, 130, 405, 709
MboII GAAGA 4 cut(s) 10, 203, 301, 539
MluCI AATT 3 cut(s) 342, 415, 530
MmeI TCCRAC 1 cut(s) 516
MnlI CCTC 6 cut(s) 39, 48, 382, 393, 580, 665
MseI TTAA 4 cut(s) 180, 555, 594, 702
MslI CAYNNNNRTG 1 cut(s) 609
MspA1I CMGCKG 1 cut(s) 439
MspCI CTTAAG 1 cut(s) 701
MspI CCGG 1 cut(s) 721
MspR9I CCNGG 2 cut(s) 721, 722
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 7 cut(s) 82, 220, 229, 283, 650, 659, 662
NciI CCSGG 2 cut(s) 721, 722
NdeII GATC 4 cut(s) 120, 130, 405, 709
NlaIII CATG 5 cut(s) 208, 325, 412, 608, 680
NlaIV GGNNCC 1 cut(s) 222
NspI RCATGY 1 cut(s) 208
PaeI GCATGC 1 cut(s) 208
PciSI GCTCTTC 1 cut(s) 186
PfeI GAWTC 3 cut(s) 292, 318, 505
PkrI GCNGC 6 cut(s) 234, 438, 640, 643, 655, 664
PspN4I GGNNCC 1 cut(s) 222
PspPI GGNCC 1 cut(s) 221
PstI CTGCAG 1 cut(s) 303
RsaI GTAC 1 cut(s) 634
RsaNI GTAC 1 cut(s) 633
RseI CAYNNNNRTG 1 cut(s) 609
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 4 cut(s) 180, 555, 594, 702
SatI GCNGC 6 cut(s) 233, 437, 639, 642, 654, 663
Sau3AI GATC 4 cut(s) 120, 130, 405, 709
Sau96I GGNCC 1 cut(s) 221
ScrFI CCNGG 2 cut(s) 721, 722
SetI ASST 7 cut(s) 108, 112, 523, 555, 565, 570, 717
SfaNI GCATC 3 cut(s) 77, 248, 359
SfcI CTRYAG 1 cut(s) 299
SmaI CCCGGG 1 cut(s) 722
SmiMI CAYNNNNRTG 1 cut(s) 609
SmlI CTYRAG 1 cut(s) 701
SmoI CTYRAG 1 cut(s) 701
SphI GCATGC 1 cut(s) 208
Sse9I AATT 3 cut(s) 342, 415, 530
SsiI CCGC 5 cut(s) 74, 154, 314, 439, 707
SspMI CTAG 1 cut(s) 522
StyD4I CCNGG 2 cut(s) 719, 720
TaaI ACNGT 2 cut(s) 429, 472
TaqI TCGA 3 cut(s) 123, 244, 458
TasI AATT 3 cut(s) 342, 415, 530
TatI WGTACW 1 cut(s) 632
TfiI GAWTC 3 cut(s) 292, 318, 505
Tru1I TTAA 4 cut(s) 180, 555, 594, 702
Tru9I TTAA 4 cut(s) 180, 555, 594, 702
TscAI CASTG 2 cut(s) 178, 475
TseI GCWGC 6 cut(s) 232, 436, 638, 641, 653, 662
TspDTI ATGAA 1 cut(s) 573
TspMI CCCGGG 1 cut(s) 720
TspRI CASTG 2 cut(s) 178, 475
Vha464I CTTAAG 1 cut(s) 701
XceI RCATGY 1 cut(s) 208
XmaI CCCGGG 1 cut(s) 720
XspI CTAG 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.