Rh1AG053000

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001612
Physical Location & Seq
Forward (+)
8876140 .. 8880409
4270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG053000.1

Sequence Viewer

Length: 855 bp
ATGGGCTTTTCACCATTCTTCCCAAACCCTCTGTTTCCTCCTGTCAAAAACCCTAACAAGCATCGTGCTTCACCGCCACCAAGTAAGAAGCAAAAGGTAGCTGATGATGAGATCGACACAGATCAAGAAGGCATTGAGCAACTCCGCGACGTCGTTTCTGTCAGTGGAGTCAATCTTGTGGAAGAGCAACAGCGCATGCTGTTGCTTTCGGGGCCCAAGAATCAGCAAGCATCTCGAAAACTTGTGTTTCAAGAAAACCAAGAAGGGCAGGTTTTGCAGAGGATTCCCCTGCAGAAAAAGTTGGCGGGAGTCATGGGGAGGTGCGGTTTGAGAATCGGTGTAGACAAAGATGTGGAGAGATGCTTGTCAATGTGTGTGGAGGAGAGAATGAGGGGGATCATATGCAATTTGATAAGACAGTCGAAGCAGCGGGTTGATTGCGAAAAATTGAGACACCACACTGTTTCTACATCTGATGCGAAGCAAGAGATTATGATTCTCAACAGGAAAGCTAGGGAAGAGTTGCTGGAAAAGGCTCAGAAGCTTAATGAAGCTAAGGTTAGCACTAACGGATTTGAGGGTGTTAAGGATAAACATGACGATGCAGATGACAGAATGAGGAGAAGTACAGCAGCAGCAAATGTTGCTGCCCTTGCTGCTCTTGGAGGACATGACATATTGGCCAAATGGAAACTTAAGGTGGATCAGCTATCCCGGGAGAAGCATCGAGATTCTCCATTTCAATTCGGCCTTCTTGTGATTGGGTCGGGGATTCTAGCCTCCTTCAAACAACACGTTAACGCGAAGCCTCCCCGGATCAAATTTGAAAATATTTGTAACATTGTGGATATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

284

Amino Acids

31.94

Weight (kDa)

9.35

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF4 PF05236 48 - 228 3.9e-35 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 153
Acc36I ACCTGC 1 cut(s) 259
AccI GTMKAC 1 cut(s) 342
AccII CGCG 2 cut(s) 147, 803
AciI CCGC 5 cut(s) 74, 145, 305, 324, 430
AclWI GGATC 3 cut(s) 404, 711, 824
AcoI YGGCCR 1 cut(s) 681
AcsI RAATTY 1 cut(s) 821
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 1 cut(s) 628
AflII CTTAAG 1 cut(s) 695
AflIII ACRYGT 1 cut(s) 793
AgsI TTSAA 4 cut(s) 251, 743, 787, 827
AluBI AGCT 5 cut(s) 101, 512, 544, 554, 709
AluI AGCT 5 cut(s) 101, 512, 544, 554, 709
Alw26I GTCTC 1 cut(s) 445
AlwI GGATC 3 cut(s) 404, 711, 824
Ama87I CYCGRG 1 cut(s) 714
AoxI GGCC 3 cut(s) 212, 681, 748
ApaI GGGCCC 1 cut(s) 216
ApeKI GCWGC 5 cut(s) 427, 632, 635, 647, 656
ApoI RAATTY 1 cut(s) 821
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 2 cut(s) 212, 213
AsuC2I CCSGG 3 cut(s) 715, 716, 814
AsuHPI GGTGA 2 cut(s) 3, 63
AvaI CYCGRG 1 cut(s) 714
BaeGI GKGCMC 1 cut(s) 216
BalI TGGCCA 1 cut(s) 683
BanII GRGCYC 1 cut(s) 216
BbvI GCAGC 5 cut(s) 439, 634, 643, 644, 647
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BcnI CCSGG 3 cut(s) 715, 716, 814
BcoDI GTCTC 1 cut(s) 445
BfaI CTAG 2 cut(s) 513, 776
BfmI CTRYAG 1 cut(s) 290
BfrI CTTAAG 1 cut(s) 695
BfuAI ACCTGC 1 cut(s) 259
BisI GCNGC 5 cut(s) 428, 633, 636, 648, 657
BlsI GCNGC 5 cut(s) 429, 634, 637, 649, 658
Bme1390I CCNGG 3 cut(s) 715, 716, 814
BmeT110I CYCGRG 1 cut(s) 714
BmgT120I GGNCC 2 cut(s) 212, 213
BmiI GGNNCC 2 cut(s) 213, 214
BmrFI CCNGG 3 cut(s) 715, 716, 814
BmsI GCATC 6 cut(s) 70, 239, 350, 466, 592, 733
Bpu10I CCTNAGC 1 cut(s) 555
BpuMI CCSGG 3 cut(s) 715, 716, 814
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 714, 812
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
BseDI CCNNGG 2 cut(s) 714, 812
BseMII CTCAG 1 cut(s) 551
BseRI GAGGAG 2 cut(s) 395, 634
BseSI GKGCMC 1 cut(s) 216
BseXI GCAGC 5 cut(s) 439, 634, 643, 644, 647
Bsh1236I CGCG 2 cut(s) 147, 803
BshFI GGCC 3 cut(s) 214, 683, 750
BsiHKCI CYCGRG 1 cut(s) 714
BsiSI CCGG 2 cut(s) 715, 814
BsmAI GTCTC 1 cut(s) 445
BsnI GGCC 3 cut(s) 214, 683, 750
BsoBI CYCGRG 1 cut(s) 714
Bsp120I GGGCCC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 5 cut(s) 111, 121, 396, 703, 816
BspACI CCGC 5 cut(s) 74, 145, 305, 324, 430
BspANI GGCC 3 cut(s) 214, 683, 750
BspCNI CTCAG 1 cut(s) 550
BspFNI CGCG 2 cut(s) 147, 803
BspLI GGNNCC 2 cut(s) 213, 214
BspMAI CTGCAG 1 cut(s) 294
BspMI ACCTGC 1 cut(s) 259
BspPI GGATC 3 cut(s) 404, 711, 824
BspQI GCTCTTC 1 cut(s) 177
BspTI CTTAAG 1 cut(s) 695
BssECI CCNNGG 2 cut(s) 714, 812
BssMI GATC 5 cut(s) 111, 121, 396, 703, 816
BssNI GRCGYC 1 cut(s) 150
Bst4CI ACNGT 2 cut(s) 420, 463
Bst6I CTCTTC 2 cut(s) 177, 513
BstACI GRCGYC 1 cut(s) 150
BstAFI CTTAAG 1 cut(s) 695
BstAPI GCANNNNNTGC 2 cut(s) 274, 644
BstC8I GCNNGC 2 cut(s) 197, 228
BstDEI CTNAG 2 cut(s) 537, 555
BstFNI CGCG 2 cut(s) 147, 803
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 5 cut(s) 114, 124, 399, 706, 819
BstMAI GTCTC 1 cut(s) 445
BstMBI GATC 5 cut(s) 111, 121, 396, 703, 816
BstMWI GCNNNNNNNGC 5 cut(s) 211, 274, 644, 653, 656
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 3 cut(s) 713, 714, 812
BstSFI CTRYAG 1 cut(s) 290
BstSLI GKGCMC 1 cut(s) 216
BstUI CGCG 2 cut(s) 147, 803
BstV1I GCAGC 5 cut(s) 439, 634, 643, 644, 647
BsuRI GGCC 3 cut(s) 214, 683, 750
BtsIMutI CAGTG 2 cut(s) 169, 459
BveI ACCTGC 1 cut(s) 259
Cac8I GCNNGC 2 cut(s) 197, 228
CfoI GCGC 1 cut(s) 195
Cfr13I GGNCC 2 cut(s) 212, 213
Cfr9I CCCGGG 1 cut(s) 714
Csp6I GTAC 1 cut(s) 627
CspCI CAANNNNNGTGG 2 cut(s) 357, 392
CviAII CATG 4 cut(s) 196, 313, 596, 671
CviQI GTAC 1 cut(s) 627
DdeI CTNAG 2 cut(s) 537, 555
DpnI GATC 5 cut(s) 113, 123, 398, 705, 818
DpnII GATC 5 cut(s) 111, 121, 396, 703, 816
EaeI YGGCCR 1 cut(s) 681
Eam1104I CTCTTC 2 cut(s) 177, 513
EarI CTCTTC 2 cut(s) 177, 513
Eco24I GRGCYC 1 cut(s) 216
Eco32I GATATC 1 cut(s) 850
Eco88I CYCGRG 1 cut(s) 714
EcoO109I RGGNCCY 1 cut(s) 212
EcoRV GATATC 1 cut(s) 850
EcoT38I GRGCYC 1 cut(s) 216
FaeI CATG 4 cut(s) 199, 316, 599, 674
FaiI YATR 8 cut(s) 197, 314, 401, 403, 494, 597, 672, 677
FatI CATG 4 cut(s) 195, 312, 595, 670
FauI CCCGC 2 cut(s) 298, 423
FauNDI CATATG 1 cut(s) 401
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 5 cut(s) 428, 633, 636, 648, 657
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 5 cut(s) 428, 633, 636, 648, 657
FspBI CTAG 2 cut(s) 513, 776
GlaI GCGC 1 cut(s) 194
GluI GCNGC 5 cut(s) 428, 633, 636, 648, 657
HaeIII GGCC 3 cut(s) 214, 683, 750
HapII CCGG 2 cut(s) 715, 814
HhaI GCGC 1 cut(s) 195
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 4 cut(s) 199, 316, 599, 674
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HincII GTYRAC 1 cut(s) 799
HindII GTYRAC 1 cut(s) 799
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 8 cut(s) 168, 220, 283, 309, 333, 496, 731, 772
HpaI GTTAAC 1 cut(s) 799
HpaII CCGG 2 cut(s) 715, 814
HphI GGTGA 2 cut(s) 3, 63
Hpy166II GTNNAC 2 cut(s) 343, 799
Hpy188I TCNGA 2 cut(s) 475, 540
Hpy188III TCNNGA 4 cut(s) 125, 234, 251, 728
Hpy8I GTNNAC 2 cut(s) 343, 799
Hpy99I CGWCG 2 cut(s) 152, 155
HpyAV CCTTC 4 cut(s) 122, 257, 761, 793
HpyCH4III ACNGT 2 cut(s) 420, 463
HpyCH4IV ACGT 2 cut(s) 150, 795
HpyCH4V TGCA 4 cut(s) 277, 292, 405, 605
HpyF10VI GCNNNNNNNGC 5 cut(s) 211, 274, 644, 653, 656
HpyF3I CTNAG 2 cut(s) 537, 555
HpySE526I ACGT 2 cut(s) 150, 795
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 4 cut(s) 199, 316, 599, 674
HspAI GCGC 1 cut(s) 193
KspAI GTTAAC 1 cut(s) 799
Kzo9I GATC 5 cut(s) 111, 121, 396, 703, 816
LguI GCTCTTC 1 cut(s) 177
LpnPI CCDG 7 cut(s) 54, 254, 302, 490, 512, 728, 827
Lsp1109I GCAGC 5 cut(s) 439, 634, 643, 644, 647
LweI GCATC 6 cut(s) 70, 239, 350, 466, 592, 733
MaeI CTAG 2 cut(s) 513, 776
MaeII ACGT 2 cut(s) 150, 795
MaeIII GTNAC 1 cut(s) 836
MalI GATC 5 cut(s) 113, 123, 398, 705, 818
MboI GATC 5 cut(s) 111, 121, 396, 703, 816
MboII GAAGA 3 cut(s) 10, 194, 530
MhlI GDGCHC 1 cut(s) 216
MlsI TGGCCA 1 cut(s) 683
MluCI AATT 4 cut(s) 406, 446, 743, 821
MluNI TGGCCA 1 cut(s) 683
MlyI GAGTC 2 cut(s) 177, 318
Mox20I TGGCCA 1 cut(s) 683
MscI TGGCCA 1 cut(s) 683
MseI TTAA 4 cut(s) 546, 585, 696, 798
MslI CAYNNNNRTG 1 cut(s) 600
Msp20I TGGCCA 1 cut(s) 683
MspA1I CMGCKG 1 cut(s) 430
MspCI CTTAAG 1 cut(s) 695
MspI CCGG 2 cut(s) 715, 814
MspR9I CCNGG 3 cut(s) 715, 716, 814
MvnI CGCG 2 cut(s) 147, 803
MwoI GCNNNNNNNGC 5 cut(s) 211, 274, 644, 653, 656
NciI CCSGG 3 cut(s) 715, 716, 814
NdeI CATATG 1 cut(s) 401
NdeII GATC 5 cut(s) 111, 121, 396, 703, 816
NlaIII CATG 4 cut(s) 199, 316, 599, 674
NlaIV GGNNCC 2 cut(s) 213, 214
NspI RCATGY 1 cut(s) 199
PaeI GCATGC 1 cut(s) 199
PciSI GCTCTTC 1 cut(s) 177
PfeI GAWTC 6 cut(s) 220, 283, 333, 496, 731, 772
PkrI GCNGC 5 cut(s) 429, 634, 637, 649, 658
PleI GAGTC 2 cut(s) 176, 317
PpsI GAGTC 2 cut(s) 176, 317
PspN4I GGNNCC 2 cut(s) 213, 214
PspOMI GGGCCC 1 cut(s) 212
PspPI GGNCC 2 cut(s) 212, 213
PstI CTGCAG 1 cut(s) 294
RsaI GTAC 1 cut(s) 628
RsaNI GTAC 1 cut(s) 627
RseI CAYNNNNRTG 1 cut(s) 600
SapI GCTCTTC 1 cut(s) 177
SaqAI TTAA 4 cut(s) 546, 585, 696, 798
SatI GCNGC 5 cut(s) 428, 633, 636, 648, 657
Sau3AI GATC 5 cut(s) 111, 121, 396, 703, 816
Sau96I GGNCC 2 cut(s) 212, 213
SchI GAGTC 2 cut(s) 177, 318
ScrFI CCNGG 3 cut(s) 715, 716, 814
SduI GDGCHC 1 cut(s) 216
SfaNI GCATC 6 cut(s) 70, 239, 350, 466, 592, 733
SfcI CTRYAG 1 cut(s) 290
SmaI CCCGGG 1 cut(s) 716
SmiMI CAYNNNNRTG 1 cut(s) 600
SmlI CTYRAG 1 cut(s) 695
SmoI CTYRAG 1 cut(s) 695
SphI GCATGC 1 cut(s) 199
Sse9I AATT 4 cut(s) 406, 446, 743, 821
SsiI CCGC 5 cut(s) 74, 145, 305, 324, 430
SspI AATATT 1 cut(s) 832
SspMI CTAG 2 cut(s) 513, 776
StyD4I CCNGG 3 cut(s) 713, 714, 812
TaaI ACNGT 2 cut(s) 420, 463
TaiI ACGT 2 cut(s) 153, 798
TaqI TCGA 4 cut(s) 114, 235, 422, 727
TasI AATT 4 cut(s) 406, 446, 743, 821
TatI WGTACW 1 cut(s) 626
TfiI GAWTC 6 cut(s) 220, 283, 333, 496, 731, 772
Tru1I TTAA 4 cut(s) 546, 585, 696, 798
Tru9I TTAA 4 cut(s) 546, 585, 696, 798
TscAI CASTG 2 cut(s) 169, 466
TseI GCWGC 5 cut(s) 427, 632, 635, 647, 656
TspDTI ATGAA 1 cut(s) 564
TspGWI ACGGA 1 cut(s) 585
TspMI CCCGGG 1 cut(s) 714
TspRI CASTG 2 cut(s) 169, 466
Vha464I CTTAAG 1 cut(s) 695
XapI RAATTY 1 cut(s) 821
XceI RCATGY 1 cut(s) 199
XmaI CCCGGG 1 cut(s) 714
XmiI GTMKAC 1 cut(s) 342
XspI CTAG 2 cut(s) 513, 776
ZraI GACGTC 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.