RLG00000030384

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001612
Physical Location & Seq
Reverse (-)
60480597 .. 60481604
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030384

Sequence Viewer

Length: 906 bp
ATGGGGTTTTCACCATTCTTCCCAAACCCTCTGTTTCCTCCTGTCAAAAACCCTAACAAGCGTAGTGCTTCTCTACCACCAAGTAAGAAGCAGAAGGCAGCTGATGATGAGATAGACACAGATAAAGAAGGCATTGAGCAACTCCGCGACGTCGTTTCTGTCAGTGGAGTCAATCTTGTGGAAGAGCAAGAGCGCATGCTGTTGCTTTCGGTGCCCAAGAAACGGCAAGCATCTGGAAAACTTGTGCTTCAAGAAAACCAAGAAGGGCTGGTTTTGCAGAAGATTCCCTTGCAGAAAAAGTTGGCGGGAATCATGGGGAGGTGTGGTTTGAGAATTGGTGTAGACAAAGATGTGGAGAGATGCTTGTCAATGTGTGTGGAGGAGAGAATGAGGAGGATCATATGCAATTTGATTAGCCAGTCGAAGCAGCGGGTTGATTGCGAAAAATTGAGACACCACACTGTTTCTATATCTGATGTGAAGCAAGAAATTATGATTCTCAACAAGAAAGCTGGGGAAGAGTTGCTGGAAAAGGCTCAGAAGCTTAATGAAGCTAAGGTTAGCACTAACGGATTTGAGGGTGTTAAGGATGAACATGATAATGGAGATGACAAAATGACGAGAAATACAGCAGCAGCAAATGTTGCTGCCCTTGCTGCTCATGGAGGACATGACATATTGGTGAAATGGCAACTTAAGGCGGATCAGCTGGCCCGGGAGAAGCGTCGAGCTGGGAGTGCTGTTGGGAAGTTTGGGAGGAATTGCCAAGTTATGATGATTCCTCAAACAAAGGTGGCTAGTACTCGTAGTATATCTGTCAAGGATGTGATCGCTGTTCTCGAAAAAGAACTTCAGATGTCCAAGTCTACTCTGATCTATTTACTAATGAACACTGCTAGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

302

Amino Acids

33.48

Weight (kDa)

9.42

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF4 PF05236 48 - 293 1.7e-40 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 153
AccB1I GGYRCC 1 cut(s) 211
AccI GTMKAC 2 cut(s) 342, 866
AccII CGCG 1 cut(s) 147
AciI CCGC 4 cut(s) 145, 305, 430, 701
AclWI GGATC 2 cut(s) 404, 711
AcuI CTGAAG 1 cut(s) 836
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 1 cut(s) 802
AfiI CCNNNNNNNGG 1 cut(s) 222
AflII CTTAAG 1 cut(s) 695
AgsI TTSAA 1 cut(s) 251
AluBI AGCT 6 cut(s) 101, 512, 544, 554, 709, 731
AluI AGCT 6 cut(s) 101, 512, 544, 554, 709, 731
Alw26I GTCTC 1 cut(s) 445
AlwI GGATC 2 cut(s) 404, 711
Ama87I CYCGRG 1 cut(s) 714
AoxI GGCC 1 cut(s) 711
ApeKI GCWGC 6 cut(s) 98, 427, 632, 635, 647, 656
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 712
AsuC2I CCSGG 2 cut(s) 715, 716
AsuHPI GGTGA 2 cut(s) 3, 694
AsuNHI GCTAGC 1 cut(s) 896
AvaI CYCGRG 1 cut(s) 714
BaeGI GKGCMC 1 cut(s) 216
BanI GGYRCC 1 cut(s) 211
BbvI GCAGC 6 cut(s) 110, 439, 634, 643, 644, 647
BceAI ACGGC 1 cut(s) 239
BcnI CCSGG 2 cut(s) 715, 716
BcoDI GTCTC 1 cut(s) 445
BfaI CTAG 2 cut(s) 798, 897
BfrI CTTAAG 1 cut(s) 695
BisI GCNGC 6 cut(s) 99, 428, 633, 636, 648, 657
BlsI GCNGC 6 cut(s) 100, 429, 634, 637, 649, 658
BmcAI AGTACT 1 cut(s) 802
Bme1390I CCNGG 2 cut(s) 715, 716
BmeT110I CYCGRG 1 cut(s) 714
BmgT120I GGNCC 1 cut(s) 712
BmiI GGNNCC 1 cut(s) 213
BmrFI CCNGG 2 cut(s) 715, 716
BmsI GCATC 2 cut(s) 239, 350
BmtI GCTAGC 1 cut(s) 900
Bpu10I CCTNAGC 1 cut(s) 555
BpuMI CCSGG 2 cut(s) 715, 716
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 714
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse118I RCCGGY 1 cut(s) 900
Bse1I ACTGG 1 cut(s) 418
BseDI CCNNGG 1 cut(s) 714
BseGI GGATG 2 cut(s) 595, 829
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMII CTCAG 1 cut(s) 551
BseNI ACTGG 1 cut(s) 418
BseRI GAGGAG 2 cut(s) 395, 406
BseSI GKGCMC 1 cut(s) 216
BseXI GCAGC 6 cut(s) 110, 439, 634, 643, 644, 647
BseYI CCCAGC 2 cut(s) 512, 731
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 1 cut(s) 713
BshNI GGYRCC 1 cut(s) 211
BsiHKCI CYCGRG 1 cut(s) 714
BsiSI CCGG 2 cut(s) 715, 901
BslI CCNNNNNNNGG 1 cut(s) 222
BsmAI GTCTC 1 cut(s) 445
BsnI GGCC 1 cut(s) 713
BsoBI CYCGRG 1 cut(s) 714
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 4 cut(s) 396, 703, 828, 873
BspACI CCGC 4 cut(s) 145, 305, 430, 701
BspANI GGCC 1 cut(s) 713
BspCNI CTCAG 1 cut(s) 550
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 213
BspOI GCTAGC 1 cut(s) 900
BspPI GGATC 2 cut(s) 404, 711
BspQI GCTCTTC 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 211
BspTI CTTAAG 1 cut(s) 695
BsrFI RCCGGY 1 cut(s) 900
BsrI ACTGG 1 cut(s) 418
BssAI RCCGGY 1 cut(s) 900
BssECI CCNNGG 1 cut(s) 714
BssMI GATC 4 cut(s) 396, 703, 828, 873
BssNI GRCGYC 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 463
Bst6I CTCTTC 2 cut(s) 177, 513
BstACI GRCGYC 1 cut(s) 150
BstAFI CTTAAG 1 cut(s) 695
BstAPI GCANNNNNTGC 1 cut(s) 644
BstC8I GCNNGC 4 cut(s) 197, 228, 711, 898
BstDEI CTNAG 2 cut(s) 537, 555
BstF5I GGATG 2 cut(s) 595, 829
BstFNI CGCG 1 cut(s) 147
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 4 cut(s) 399, 706, 831, 876
BstMAI GTCTC 1 cut(s) 445
BstMBI GATC 4 cut(s) 396, 703, 828, 873
BstMWI GCNNNNNNNGC 6 cut(s) 211, 274, 644, 653, 656, 737
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 2 cut(s) 713, 714
BstSLI GKGCMC 1 cut(s) 216
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 6 cut(s) 110, 439, 634, 643, 644, 647
BsuRI GGCC 1 cut(s) 713
BtsCI GGATG 2 cut(s) 595, 829
BtsI GCAGTG 1 cut(s) 891
BtsIMutI CAGTG 3 cut(s) 169, 459, 891
Cac8I GCNNGC 4 cut(s) 197, 228, 711, 898
CfoI GCGC 1 cut(s) 195
Cfr10I RCCGGY 1 cut(s) 900
Cfr13I GGNCC 1 cut(s) 712
Cfr9I CCCGGG 1 cut(s) 714
CseI GACGC 1 cut(s) 713
Csp6I GTAC 1 cut(s) 801
CspCI CAANNNNNGTGG 2 cut(s) 357, 392
CviAII CATG 5 cut(s) 196, 313, 596, 662, 671
CviQI GTAC 1 cut(s) 801
DdeI CTNAG 2 cut(s) 537, 555
DpnI GATC 4 cut(s) 398, 705, 830, 875
DpnII GATC 4 cut(s) 396, 703, 828, 873
Eam1104I CTCTTC 2 cut(s) 177, 513
EarI CTCTTC 2 cut(s) 177, 513
EciI GGCGGA 1 cut(s) 716
Eco57I CTGAAG 1 cut(s) 836
Eco88I CYCGRG 1 cut(s) 714
FaeI CATG 5 cut(s) 199, 316, 599, 665, 674
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FatI CATG 5 cut(s) 195, 312, 595, 661, 670
FauI CCCGC 2 cut(s) 298, 423
FauNDI CATATG 1 cut(s) 401
FblI GTMKAC 2 cut(s) 342, 866
Fnu4HI GCNGC 6 cut(s) 99, 428, 633, 636, 648, 657
FokI GGATG 2 cut(s) 602, 836
Fsp4HI GCNGC 6 cut(s) 99, 428, 633, 636, 648, 657
FspBI CTAG 2 cut(s) 798, 897
GlaI GCGC 1 cut(s) 194
GluI GCNGC 6 cut(s) 99, 428, 633, 636, 648, 657
GsaI CCCAGC 2 cut(s) 516, 735
HaeIII GGCC 1 cut(s) 713
HapII CCGG 2 cut(s) 715, 901
HgaI GACGC 1 cut(s) 713
HhaI GCGC 1 cut(s) 195
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 5 cut(s) 199, 316, 599, 665, 674
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 5 cut(s) 168, 283, 309, 496, 778
HpaII CCGG 2 cut(s) 715, 901
HphI GGTGA 2 cut(s) 3, 694
Hpy166II GTNNAC 2 cut(s) 343, 867
Hpy188I TCNGA 4 cut(s) 475, 540, 855, 873
Hpy188III TCNNGA 3 cut(s) 234, 251, 839
Hpy8I GTNNAC 2 cut(s) 343, 867
Hpy99I CGWCG 3 cut(s) 152, 155, 729
HpyAV CCTTC 3 cut(s) 88, 122, 257
HpyCH4III ACNGT 1 cut(s) 463
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 3 cut(s) 277, 292, 405
HpyF10VI GCNNNNNNNGC 6 cut(s) 211, 274, 644, 653, 656, 737
HpyF3I CTNAG 2 cut(s) 537, 555
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 5 cut(s) 199, 316, 599, 665, 674
HspAI GCGC 1 cut(s) 193
Kzo9I GATC 4 cut(s) 396, 703, 828, 873
LguI GCTCTTC 1 cut(s) 177
LpnPI CCDG 9 cut(s) 54, 219, 254, 431, 498, 512, 695, 717, 728
Lsp1109I GCAGC 6 cut(s) 110, 439, 634, 643, 644, 647
LweI GCATC 2 cut(s) 239, 350
MaeI CTAG 2 cut(s) 798, 897
MaeII ACGT 1 cut(s) 150
MalI GATC 4 cut(s) 398, 705, 830, 875
MboI GATC 4 cut(s) 396, 703, 828, 873
MboII GAAGA 4 cut(s) 10, 194, 292, 530
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 5 cut(s) 333, 406, 446, 489, 760
MlyI GAGTC 1 cut(s) 177
MseI TTAA 3 cut(s) 546, 585, 696
MslI CAYNNNNRTG 2 cut(s) 600, 680
MspA1I CMGCKG 3 cut(s) 101, 430, 709
MspCI CTTAAG 1 cut(s) 695
MspI CCGG 2 cut(s) 715, 901
MspR9I CCNGG 2 cut(s) 715, 716
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 6 cut(s) 211, 274, 644, 653, 656, 737
NciI CCSGG 2 cut(s) 715, 716
NdeI CATATG 1 cut(s) 401
NdeII GATC 4 cut(s) 396, 703, 828, 873
NheI GCTAGC 1 cut(s) 896
NlaIII CATG 5 cut(s) 199, 316, 599, 665, 674
NlaIV GGNNCC 1 cut(s) 213
NspI RCATGY 1 cut(s) 199
PaeI GCATGC 1 cut(s) 199
PciSI GCTCTTC 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 837
PfeI GAWTC 4 cut(s) 283, 309, 496, 778
PkrI GCNGC 6 cut(s) 100, 429, 634, 637, 649, 658
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
PspFI CCCAGC 2 cut(s) 512, 731
PspN4I GGNNCC 1 cut(s) 213
PspPI GGNCC 1 cut(s) 712
PvuII CAGCTG 2 cut(s) 101, 709
RsaI GTAC 1 cut(s) 802
RsaNI GTAC 1 cut(s) 801
RseI CAYNNNNRTG 2 cut(s) 600, 680
SapI GCTCTTC 1 cut(s) 177
SaqAI TTAA 3 cut(s) 546, 585, 696
SatI GCNGC 6 cut(s) 99, 428, 633, 636, 648, 657
Sau3AI GATC 4 cut(s) 396, 703, 828, 873
Sau96I GGNCC 1 cut(s) 712
ScaI AGTACT 1 cut(s) 802
SchI GAGTC 1 cut(s) 177
ScrFI CCNGG 2 cut(s) 715, 716
SduI GDGCHC 1 cut(s) 216
SfaNI GCATC 2 cut(s) 239, 350
SmaI CCCGGG 1 cut(s) 716
SmiMI CAYNNNNRTG 2 cut(s) 600, 680
SmlI CTYRAG 1 cut(s) 695
SmoI CTYRAG 1 cut(s) 695
SphI GCATGC 1 cut(s) 199
Sse9I AATT 5 cut(s) 333, 406, 446, 489, 760
SsiI CCGC 4 cut(s) 145, 305, 430, 701
SspMI CTAG 2 cut(s) 798, 897
StyD4I CCNGG 2 cut(s) 713, 714
TaaI ACNGT 1 cut(s) 463
TaiI ACGT 1 cut(s) 153
TaqI TCGA 3 cut(s) 422, 727, 840
TasI AATT 5 cut(s) 333, 406, 446, 489, 760
TatI WGTACW 1 cut(s) 800
TfiI GAWTC 4 cut(s) 283, 309, 496, 778
Tru1I TTAA 3 cut(s) 546, 585, 696
Tru9I TTAA 3 cut(s) 546, 585, 696
TscAI CASTG 3 cut(s) 169, 466, 898
TseI GCWGC 6 cut(s) 98, 427, 632, 635, 647, 656
TspDTI ATGAA 3 cut(s) 564, 606, 902
TspGWI ACGGA 1 cut(s) 585
TspMI CCCGGG 1 cut(s) 714
TspRI CASTG 3 cut(s) 169, 466, 898
Vha464I CTTAAG 1 cut(s) 695
XceI RCATGY 1 cut(s) 199
XmaI CCCGGG 1 cut(s) 714
XmiI GTMKAC 2 cut(s) 342, 866
XspI CTAG 2 cut(s) 798, 897
ZraI GACGTC 1 cut(s) 151
ZrmI AGTACT 1 cut(s) 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.