RLG00000030388

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001612
Physical Location & Seq
Reverse (-)
60583427 .. 60584438
1012 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030388

Sequence Viewer

Length: 900 bp
ATGGGGTTTTCACCATTCTTCCCAAACCCTCTGTTTCCTCCTGTCAAAAACCCTAACAAGCGTAGTGCTTCTCCACCACCAAGTAAGAAGCAAAAGGTAGCTAATGATGAGATCGACACAAATCAAGAAGGCATTGAGCAACTCCGCGACGTCGTTTCTGTCAGTGGAGTCAATCTTGTGGAAGAGCAAGAGCACCTGCTGTTGCTTTCGGTGCCCAAGGAACGGCAAGCATCTGGAAAACTTGTGCTTCAAGAAAACCAAGAAGGGCTGGTTTTGCAGAAGATTCCCTGGCAGAAAAAGTTGGCGGGAATCATGGGGAGGTGTGGTTTGAGAATTGGTGTAGACAAAGATGTGGAGAGATGCTTGTCAATGTGTGTGGAGGAGAGAATGAGGGGGATCATATGCAATTTGATTAGACAGTCGAAGCAGTGGGCTGATTGCGAAAAATTGAGACACCACACTGTTTCTACATCTGATGTGAAGCAAGAAATTATGATTCTCAACAACAAAGCTACGGAAGAGTTGCAGGAAAAGGCTCAGAAGCTTAATGAAGCTAAGGTTAGCACTAACGGAATTAAGGGTGTTAAGGACAAACATGACGATGGAGATGACAAAATGAGGAGAAGTACAGCAGCAGCAAATGTTGCTGCCCTTGCTGCTCTTGGAGGACATGACATGTTGGCGAAATGGCAACTTAAGGCAGATCAGCTGGCCCAGGAGAAGTGTCGAGGTAAAGATGTAAACCACAAGGCTACATCAACTGCTGGAAGAACAATGAATGGCAAGGTGACTAGTACTGGTAGTATATCTGTCAAGGATATGATTGCTGTTCTGGAAGAGGAACCTCAGATGTCCAAGTCTACTCTGATCTATTTGCTAATGAACACTGCTAACCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

300

Amino Acids

33.13

Weight (kDa)

9.02

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF4 PF05236 48 - 291 3e-42 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 204
AatII GACGTC 1 cut(s) 153
Acc36I ACCTGC 1 cut(s) 204
AccB1I GGYRCC 1 cut(s) 211
AccI GTMKAC 2 cut(s) 342, 860
AccII CGCG 1 cut(s) 147
AciI CCGC 2 cut(s) 145, 305
AclWI GGATC 1 cut(s) 404
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 2 cut(s) 628, 796
AfiI CCNNNNNNNGG 1 cut(s) 222
AflII CTTAAG 1 cut(s) 695
AflIII ACRYGT 1 cut(s) 675
AgeI ACCGGT 1 cut(s) 894
AgsI TTSAA 1 cut(s) 251
AhlI ACTAGT 1 cut(s) 791
AjnI CCWGG 2 cut(s) 287, 714
AluBI AGCT 5 cut(s) 101, 512, 544, 554, 709
AluI AGCT 5 cut(s) 101, 512, 544, 554, 709
Alw21I GWGCWC 1 cut(s) 195
Alw26I GTCTC 1 cut(s) 445
AlwI GGATC 1 cut(s) 404
AoxI GGCC 1 cut(s) 711
ApeKI GCWGC 4 cut(s) 632, 635, 647, 656
AsiGI ACCGGT 1 cut(s) 894
AspS9I GGNCC 1 cut(s) 712
AsuHPI GGTGA 2 cut(s) 3, 799
BaeGI GKGCMC 1 cut(s) 216
BanI GGYRCC 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 195
BbvI GCAGC 4 cut(s) 634, 643, 644, 647
BccI CCATC 1 cut(s) 596
BceAI ACGGC 1 cut(s) 239
BciT130I CCWGG 2 cut(s) 289, 716
BcoDI GTCTC 1 cut(s) 445
BcuI ACTAGT 1 cut(s) 791
BfaI CTAG 1 cut(s) 792
BfrI CTTAAG 1 cut(s) 695
BfuAI ACCTGC 1 cut(s) 204
BisI GCNGC 4 cut(s) 633, 636, 648, 657
BlsI GCNGC 4 cut(s) 634, 637, 649, 658
BmcAI AGTACT 1 cut(s) 796
Bme1390I CCNGG 2 cut(s) 289, 716
BmgT120I GGNCC 1 cut(s) 712
BmiI GGNNCC 2 cut(s) 213, 843
BmrFI CCNGG 2 cut(s) 289, 716
BmsI GCATC 2 cut(s) 239, 350
Bpu10I CCTNAGC 1 cut(s) 555
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 3 cut(s) 216, 287, 714
BsaWI WCCGGW 1 cut(s) 894
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse118I RCCGGY 1 cut(s) 894
Bse1I ACTGG 1 cut(s) 802
BseBI CCWGG 2 cut(s) 289, 716
BseDI CCNNGG 3 cut(s) 216, 287, 714
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMII CTCAG 2 cut(s) 551, 860
BseNI ACTGG 1 cut(s) 802
BseRI GAGGAG 2 cut(s) 395, 634
BseSI GKGCMC 1 cut(s) 216
BseXI GCAGC 4 cut(s) 634, 643, 644, 647
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 1 cut(s) 713
BshNI GGYRCC 1 cut(s) 211
BshTI ACCGGT 1 cut(s) 894
BsiHKAI GWGCWC 1 cut(s) 195
BsiSI CCGG 1 cut(s) 895
BslI CCNNNNNNNGG 1 cut(s) 222
BsmAI GTCTC 1 cut(s) 445
BsnI GGCC 1 cut(s) 713
Bsp1286I GDGCHC 2 cut(s) 195, 216
Bsp143I GATC 4 cut(s) 111, 396, 703, 867
BspACI CCGC 2 cut(s) 145, 305
BspANI GGCC 1 cut(s) 713
BspCNI CTCAG 2 cut(s) 550, 859
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 2 cut(s) 213, 843
BspMI ACCTGC 1 cut(s) 204
BspPI GGATC 1 cut(s) 404
BspQI GCTCTTC 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 211
BspTI CTTAAG 1 cut(s) 695
BsrFI RCCGGY 1 cut(s) 894
BsrI ACTGG 1 cut(s) 802
BssAI RCCGGY 1 cut(s) 894
BssECI CCNNGG 3 cut(s) 216, 287, 714
BssMI GATC 4 cut(s) 111, 396, 703, 867
BssNI GRCGYC 1 cut(s) 150
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 2 cut(s) 289, 716
Bst4CI ACNGT 2 cut(s) 420, 463
Bst6I CTCTTC 3 cut(s) 177, 513, 831
BstACI GRCGYC 1 cut(s) 150
BstAFI CTTAAG 1 cut(s) 695
BstAPI GCANNNNNTGC 1 cut(s) 644
BstC8I GCNNGC 2 cut(s) 228, 711
BstDEI CTNAG 3 cut(s) 537, 555, 846
BstFNI CGCG 1 cut(s) 147
BstKTI GATC 4 cut(s) 114, 399, 706, 870
BstMAI GTCTC 1 cut(s) 445
BstMBI GATC 4 cut(s) 111, 396, 703, 867
BstMWI GCNNNNNNNGC 5 cut(s) 211, 274, 644, 653, 656
BstNI CCWGG 2 cut(s) 289, 716
BstNSI RCATGY 1 cut(s) 679
BstSCI CCNGG 2 cut(s) 287, 714
BstSLI GKGCMC 1 cut(s) 216
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 4 cut(s) 634, 643, 644, 647
BsuRI GGCC 1 cut(s) 713
BtsI GCAGTG 2 cut(s) 434, 885
BtsIMutI CAGTG 4 cut(s) 169, 434, 459, 885
BveI ACCTGC 1 cut(s) 204
Cac8I GCNNGC 2 cut(s) 228, 711
Cfr10I RCCGGY 1 cut(s) 894
Cfr13I GGNCC 1 cut(s) 712
Csp6I GTAC 2 cut(s) 627, 795
CspAI ACCGGT 1 cut(s) 894
CspCI CAANNNNNGTGG 2 cut(s) 357, 392
CviAII CATG 4 cut(s) 313, 596, 671, 676
CviQI GTAC 2 cut(s) 627, 795
DdeI CTNAG 3 cut(s) 537, 555, 846
DpnI GATC 4 cut(s) 113, 398, 705, 869
DpnII GATC 4 cut(s) 111, 396, 703, 867
Eam1104I CTCTTC 3 cut(s) 177, 513, 831
EarI CTCTTC 3 cut(s) 177, 513, 831
Eco130I CCWWGG 1 cut(s) 216
EcoRII CCWGG 2 cut(s) 287, 714
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 4 cut(s) 316, 599, 674, 679
FaiI YATR 9 cut(s) 314, 401, 403, 494, 597, 672, 677, 806, 821
FatI CATG 4 cut(s) 312, 595, 670, 675
FauI CCCGC 1 cut(s) 298
FauNDI CATATG 1 cut(s) 401
FblI GTMKAC 2 cut(s) 342, 860
Fnu4HI GCNGC 4 cut(s) 633, 636, 648, 657
Fsp4HI GCNGC 4 cut(s) 633, 636, 648, 657
FspBI CTAG 1 cut(s) 792
GluI GCNGC 4 cut(s) 633, 636, 648, 657
HaeIII GGCC 1 cut(s) 713
HapII CCGG 1 cut(s) 895
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 4 cut(s) 316, 599, 674, 679
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 4 cut(s) 168, 283, 309, 496
HpaII CCGG 1 cut(s) 895
HphI GGTGA 2 cut(s) 3, 799
Hpy166II GTNNAC 3 cut(s) 343, 742, 861
Hpy188I TCNGA 4 cut(s) 475, 540, 849, 867
Hpy188III TCNNGA 4 cut(s) 125, 234, 251, 833
Hpy8I GTNNAC 3 cut(s) 343, 742, 861
Hpy99I CGWCG 2 cut(s) 152, 155
HpyAV CCTTC 2 cut(s) 122, 257
HpyCH4III ACNGT 2 cut(s) 420, 463
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 3 cut(s) 277, 405, 526
HpyF10VI GCNNNNNNNGC 5 cut(s) 211, 274, 644, 653, 656
HpyF3I CTNAG 3 cut(s) 537, 555, 846
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 4 cut(s) 316, 599, 674, 679
Kzo9I GATC 4 cut(s) 111, 396, 703, 867
LguI GCTCTTC 1 cut(s) 177
Lsp1109I GCAGC 4 cut(s) 634, 643, 644, 647
LweI GCATC 2 cut(s) 239, 350
MaeI CTAG 1 cut(s) 792
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 787
MalI GATC 4 cut(s) 113, 398, 705, 869
MboI GATC 4 cut(s) 111, 396, 703, 867
MboII GAAGA 6 cut(s) 10, 194, 292, 530, 780, 848
MhlI GDGCHC 2 cut(s) 195, 216
MluCI AATT 5 cut(s) 333, 406, 446, 489, 573
MlyI GAGTC 1 cut(s) 177
MseI TTAA 4 cut(s) 546, 576, 585, 696
MslI CAYNNNNRTG 1 cut(s) 600
MspA1I CMGCKG 1 cut(s) 709
MspCI CTTAAG 1 cut(s) 695
MspI CCGG 1 cut(s) 895
MspR9I CCNGG 2 cut(s) 289, 716
MvaI CCWGG 2 cut(s) 289, 716
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 5 cut(s) 211, 274, 644, 653, 656
NdeI CATATG 1 cut(s) 401
NdeII GATC 4 cut(s) 111, 396, 703, 867
NlaIII CATG 4 cut(s) 316, 599, 674, 679
NlaIV GGNNCC 2 cut(s) 213, 843
NmuCI GTSAC 1 cut(s) 787
NspI RCATGY 1 cut(s) 679
PaqCI CACCTGC 1 cut(s) 204
PciI ACATGT 1 cut(s) 675
PciSI GCTCTTC 1 cut(s) 177
PfeI GAWTC 3 cut(s) 283, 309, 496
PinAI ACCGGT 1 cut(s) 894
PkrI GCNGC 4 cut(s) 634, 637, 649, 658
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
PscI ACATGT 1 cut(s) 675
Psp6I CCWGG 2 cut(s) 287, 714
PspGI CCWGG 2 cut(s) 287, 714
PspN4I GGNNCC 2 cut(s) 213, 843
PspPI GGNCC 1 cut(s) 712
PvuII CAGCTG 1 cut(s) 709
RsaI GTAC 2 cut(s) 628, 796
RsaNI GTAC 2 cut(s) 627, 795
RseI CAYNNNNRTG 1 cut(s) 600
SapI GCTCTTC 1 cut(s) 177
SaqAI TTAA 4 cut(s) 546, 576, 585, 696
SatI GCNGC 4 cut(s) 633, 636, 648, 657
Sau3AI GATC 4 cut(s) 111, 396, 703, 867
Sau96I GGNCC 1 cut(s) 712
ScaI AGTACT 1 cut(s) 796
SchI GAGTC 1 cut(s) 177
ScrFI CCNGG 2 cut(s) 289, 716
SduI GDGCHC 2 cut(s) 195, 216
SfaNI GCATC 2 cut(s) 239, 350
SmiMI CAYNNNNRTG 1 cut(s) 600
SmlI CTYRAG 1 cut(s) 695
SmoI CTYRAG 1 cut(s) 695
SpeI ACTAGT 1 cut(s) 791
Sse9I AATT 5 cut(s) 333, 406, 446, 489, 573
SsiI CCGC 2 cut(s) 145, 305
SspMI CTAG 1 cut(s) 792
StyD4I CCNGG 2 cut(s) 287, 714
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 2 cut(s) 420, 463
TaiI ACGT 1 cut(s) 153
TaqI TCGA 3 cut(s) 114, 422, 727
TasI AATT 5 cut(s) 333, 406, 446, 489, 573
TatI WGTACW 2 cut(s) 626, 794
TfiI GAWTC 3 cut(s) 283, 309, 496
Tru1I TTAA 4 cut(s) 546, 576, 585, 696
Tru9I TTAA 4 cut(s) 546, 576, 585, 696
TscAI CASTG 4 cut(s) 169, 434, 466, 892
TseFI GTSAC 1 cut(s) 787
TseI GCWGC 4 cut(s) 632, 635, 647, 656
Tsp45I GTSAC 1 cut(s) 787
TspDTI ATGAA 3 cut(s) 564, 791, 896
TspGWI ACGGA 2 cut(s) 530, 585
TspRI CASTG 4 cut(s) 169, 434, 466, 892
Vha464I CTTAAG 1 cut(s) 695
XceI RCATGY 1 cut(s) 679
XmiI GTMKAC 2 cut(s) 342, 860
XspI CTAG 1 cut(s) 792
ZraI GACGTC 1 cut(s) 151
ZrmI AGTACT 1 cut(s) 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.