Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000749.1

Orthogroup ID

OG0001612

Physical Location & Seq

Genomic Coordinates Reverse (-)

234051 .. 235010

Gene Structure 960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000749.1_g000053.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ctgtttcctcctgtcaaaaaccctaacaagcgtagagcttctccaccaccaagtaagaagcaaaaggtagctgatgatgagatcgacacagatcaagaaggcattgagcaactctgcgacgtcctttctgtcagtggagtcaatcttgtggaagagcaagggcgcatgctgttgcttccggggcccaagaagcagcaagcatctcgaaaacttgtgtttcaagaaaaccaagaagggcaggttttgcagaagattcccctgcagaaaaagttggcgggaatcatggggaggtgtggtttgagaattggtgttgacaaagatgtggagagattcttgtcaatgtgtgtggaggagagaatgagggggatcatatgcaatttgattagacagtcgaagcagtgggttgattgcgaaaaatcgagacaccacactgtttctatatctgatgtgaagcaagagattatgattctcaacaggaaagctagggaagagttgcaggaaaaggctcaaaagcttaatgaagctgaggttaacactaacggatttgagggtgttcaggacaaacatgatcatggagaagaaaaaatgaggagaagtacagcagcagcaaatgttgctgcccttgctgctcttggaggacatgacatattggcaaaatggcaacttaaggcggatcagctggccagggagaagcgtcgaggtaaagatgtaaaccacaaggctacatcaactgctagaagaacaatgaatggcaatgaagaagcagagaaaaggggcagtgtagaagctttggtgtctgcagctgggagtgctgttcgaaagtttgggaggaatgcccaagttacgatgatgcctcaaacaaaagtggctagtactcgtagtatatctgtcaaggatgtgattgctgtgatgtccaagtctactctgatctatttactaatgaacactgctagctggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05016 ko05168 map03022 map05016 map05168

Pfam Domains

Protein Families

RST TAF4

Protein Analysis

319

Amino Acids

35.57

Weight (kDa)

9.61

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001612)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02790
rosa_laevigata	RLG00000028661 RLG00000030349 RLG00000030352 RLG00000030356 RLG00000030371 RLG00000030378 RLG00000030380 RLG00000030384 RLG00000030386 RLG00000030388
rosa_multiflora	Rmu_sc0000749.1_g000030 Rmu_sc0000749.1_g000053 Rmu_sc0001932.1_g000014 Rmu_sc0001932.1_g000030 Rmu_sc0002132.1_g000050 Rmu_sc0002263.1_g000033 Rmu_sc0004185.1_g000003
rosa_roxburghii	Rroxscaffold_4G00327000 Rroxscaffold_4G00327020 Rroxscaffold_4G00327130 Rroxscaffold_4G00327210
rosa_rugosa	Rorug01G0035600 Rorug01G0035800 Rorug06G0044400
rosa_samantha	Rh1AG048700 Rh1AG048800 Rh1AG048900 Rh1AG050900 Rh1AG051400 Rh1AG051700 Rh1AG051800 Rh1AG052300 Rh1AG053000 Rh1AG053100 Rh1AG053900 Rh1BG046300 Rh1CG018200 Rh1CG052600 Rh1CG052700 Rh1CG052900 Rh1CG053300 Rh1CG053400 Rh2AG524800
rosa_wichuraiana	Rw1G004420 Rw1G004460 Rw1G004520 Rw1G004600 Rw1G004650 Rw1G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	123
Acc36I	ACCTGC	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	920
AciI	CCGC	2 cut(s)	275, 671
AclWI	GGATC	2 cut(s)	374, 681
AcoI	YGGCCR	1 cut(s)	681
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	2 cut(s)	598, 874
AflII	CTTAAG	1 cut(s)	665
AgsI	TTSAA	1 cut(s)	221
AjnI	CCWGG	1 cut(s)	683
AluBI	AGCT	9 cut(s)	38, 71, 482, 514, 524, 679, 788, 803, 954
AluI	AGCT	9 cut(s)	38, 71, 482, 514, 524, 679, 788, 803, 954
Alw26I	GTCTC	1 cut(s)	415
AlwI	GGATC	2 cut(s)	374, 681
AoxI	GGCC	2 cut(s)	182, 681
ApaI	GGGCCC	1 cut(s)	186
ApeKI	GCWGC	6 cut(s)	193, 602, 605, 617, 626, 800
AspLEI	GCGC	1 cut(s)	165
AspS9I	GGNCC	2 cut(s)	182, 183
AsuC2I	CCSGG	1 cut(s)	180
AsuII	TTCGAA	1 cut(s)	817
AsuNHI	GCTAGC	1 cut(s)	950
BaeGI	GKGCMC	1 cut(s)	186
BalI	TGGCCA	1 cut(s)	683
BanII	GRGCYC	1 cut(s)	186
BbvCI	CCTCAGC	1 cut(s)	525
BbvI	GCAGC	6 cut(s)	205, 604, 613, 614, 617, 812
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BciT130I	CCWGG	1 cut(s)	685
BclI	TGATCA	1 cut(s)	568
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	415
BfaI	CTAG	4 cut(s)	483, 735, 870, 951
BfmI	CTRYAG	2 cut(s)	260, 798
BfrI	CTTAAG	1 cut(s)	665
BfuAI	ACCTGC	1 cut(s)	229
BisI	GCNGC	6 cut(s)	194, 603, 606, 618, 627, 801
BlsI	GCNGC	6 cut(s)	195, 604, 607, 619, 628, 802
BmcAI	AGTACT	1 cut(s)	874
Bme1390I	CCNGG	2 cut(s)	180, 685
BmgT120I	GGNCC	2 cut(s)	182, 183
BmiI	GGNNCC	2 cut(s)	183, 184
BmrFI	CCNGG	2 cut(s)	180, 685
BmsI	GCATC	2 cut(s)	209, 840
BmtI	GCTAGC	1 cut(s)	954
Bpu10I	CCTNAGC	1 cut(s)	525
Bpu14I	TTCGAA	1 cut(s)	817
BpuMI	CCSGG	1 cut(s)	180
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	179, 684
BsaXI	ACNNNNNCTCC	2 cut(s)	280, 310
Bse3DI	GCAATG	1 cut(s)	760
BseBI	CCWGG	1 cut(s)	685
BseDI	CCNNGG	2 cut(s)	179, 684
BseGI	GGATG	1 cut(s)	901
BseMI	GCAATG	1 cut(s)	760
BseMII	CTCAG	1 cut(s)	516
BseRI	GAGGAG	2 cut(s)	365, 604
BseSI	GKGCMC	1 cut(s)	186
BseXI	GCAGC	6 cut(s)	205, 604, 613, 614, 617, 812
BseYI	CCCAGC	1 cut(s)	803
BshFI	GGCC	2 cut(s)	184, 683
BsiSI	CCGG	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	415
BsmI	GAATGC	1 cut(s)	838
BsnI	GGCC	2 cut(s)	184, 683
Bsp119I	TTCGAA	1 cut(s)	817
Bsp120I	GGGCCC	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	6 cut(s)	81, 91, 366, 568, 673, 927
BspACI	CCGC	2 cut(s)	275, 671
BspANI	GGCC	2 cut(s)	184, 683
BspCNI	CTCAG	1 cut(s)	517
BspLI	GGNNCC	2 cut(s)	183, 184
BspMAI	CTGCAG	2 cut(s)	264, 802
BspMI	ACCTGC	1 cut(s)	229
BspOI	GCTAGC	1 cut(s)	954
BspPI	GGATC	2 cut(s)	374, 681
BspQI	GCTCTTC	1 cut(s)	147
BspT104I	TTCGAA	1 cut(s)	817
BspTI	CTTAAG	1 cut(s)	665
BsrDI	GCAATG	1 cut(s)	760
BssECI	CCNNGG	2 cut(s)	179, 684
BssMI	GATC	6 cut(s)	81, 91, 366, 568, 673, 927
BssNI	GRCGYC	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	685
Bst4CI	ACNGT	2 cut(s)	390, 433
Bst6I	CTCTTC	2 cut(s)	147, 483
BstACI	GRCGYC	1 cut(s)	120
BstAFI	CTTAAG	1 cut(s)	665
BstAPI	GCANNNNNTGC	2 cut(s)	244, 614
BstBI	TTCGAA	1 cut(s)	817
BstC8I	GCNNGC	4 cut(s)	167, 198, 681, 952
BstDEI	CTNAG	1 cut(s)	525
BstF5I	GGATG	1 cut(s)	901
BstHHI	GCGC	1 cut(s)	165
BstKTI	GATC	6 cut(s)	84, 94, 369, 571, 676, 930
BstMAI	GTCTC	1 cut(s)	415
BstMBI	GATC	6 cut(s)	81, 91, 366, 568, 673, 927
BstMWI	GCNNNNNNNGC	7 cut(s)	181, 190, 244, 614, 623, 626, 809
BstNI	CCWGG	1 cut(s)	685
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	2 cut(s)	178, 683
BstSFI	CTRYAG	2 cut(s)	260, 798
BstSLI	GKGCMC	1 cut(s)	186
BstV1I	GCAGC	6 cut(s)	205, 604, 613, 614, 617, 812
BsuRI	GGCC	2 cut(s)	184, 683
BtsCI	GGATG	1 cut(s)	901
BtsI	GCAGTG	3 cut(s)	404, 784, 945
BtsIMutI	CAGTG	5 cut(s)	139, 404, 429, 784, 945
BveI	ACCTGC	1 cut(s)	229
Cac8I	GCNNGC	4 cut(s)	167, 198, 681, 952
CfoI	GCGC	1 cut(s)	165
Cfr13I	GGNCC	2 cut(s)	182, 183
CseI	GACGC	1 cut(s)	683
Csp6I	GTAC	2 cut(s)	597, 873
CspCI	CAANNNNNGTGG	2 cut(s)	327, 362
CviAII	CATG	5 cut(s)	166, 283, 566, 572, 641
CviQI	GTAC	2 cut(s)	597, 873
DdeI	CTNAG	1 cut(s)	525
DpnI	GATC	6 cut(s)	83, 93, 368, 570, 675, 929
DpnII	GATC	6 cut(s)	81, 91, 366, 568, 673, 927
EaeI	YGGCCR	1 cut(s)	681
Eam1104I	CTCTTC	2 cut(s)	147, 483
EarI	CTCTTC	2 cut(s)	147, 483
EciI	GGCGGA	1 cut(s)	686
Eco24I	GRGCYC	1 cut(s)	186
EcoO109I	RGGNCCY	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	683
EcoT38I	GRGCYC	1 cut(s)	186
FaeI	CATG	5 cut(s)	169, 286, 569, 575, 644
FatI	CATG	5 cut(s)	165, 282, 565, 571, 640
FauI	CCCGC	1 cut(s)	268
FauNDI	CATATG	1 cut(s)	371
FbaI	TGATCA	1 cut(s)	568
FblI	GTMKAC	1 cut(s)	920
Fnu4HI	GCNGC	6 cut(s)	194, 603, 606, 618, 627, 801
FokI	GGATG	1 cut(s)	908
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	6 cut(s)	194, 603, 606, 618, 627, 801
FspBI	CTAG	4 cut(s)	483, 735, 870, 951
GlaI	GCGC	1 cut(s)	164
GluI	GCNGC	6 cut(s)	194, 603, 606, 618, 627, 801
GsaI	CCCAGC	1 cut(s)	807
HaeIII	GGCC	2 cut(s)	184, 683
HapII	CCGG	1 cut(s)	179
HgaI	GACGC	1 cut(s)	683
HhaI	GCGC	1 cut(s)	165
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	5 cut(s)	169, 286, 569, 575, 644
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HincII	GTYRAC	2 cut(s)	313, 532
HindII	GTYRAC	2 cut(s)	313, 532
HindIII	AAGCTT	2 cut(s)	512, 786
HinfI	GANTC	5 cut(s)	138, 253, 279, 330, 466
HpaI	GTTAAC	1 cut(s)	532
HpaII	CCGG	1 cut(s)	179
Hpy166II	GTNNAC	4 cut(s)	313, 532, 712, 921
Hpy188I	TCNGA	2 cut(s)	445, 927
Hpy188III	TCNNGA	5 cut(s)	95, 204, 221, 420, 557
Hpy8I	GTNNAC	4 cut(s)	313, 532, 712, 921
Hpy99I	CGWCG	2 cut(s)	122, 699
HpyAV	CCTTC	2 cut(s)	92, 227
HpyCH4III	ACNGT	2 cut(s)	390, 433
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	5 cut(s)	247, 262, 375, 496, 800
HpyF10VI	GCNNNNNNNGC	7 cut(s)	181, 190, 244, 614, 623, 626, 809
HpyF3I	CTNAG	1 cut(s)	525
HpySE526I	ACGT	1 cut(s)	120
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	5 cut(s)	169, 286, 569, 575, 644
HspAI	GCGC	1 cut(s)	163
Ksp22I	TGATCA	1 cut(s)	568
KspAI	GTTAAC	1 cut(s)	532
Kzo9I	GATC	6 cut(s)	81, 91, 366, 568, 673, 927
LguI	GCTCTTC	1 cut(s)	147
Lsp1109I	GCAGC	6 cut(s)	205, 604, 613, 614, 617, 812
LweI	GCATC	2 cut(s)	209, 840
MaeI	CTAG	4 cut(s)	483, 735, 870, 951
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	841
MalI	GATC	6 cut(s)	83, 93, 368, 570, 675, 929
MboI	GATC	6 cut(s)	81, 91, 366, 568, 673, 927
MboII	GAAGA	6 cut(s)	164, 262, 500, 590, 750, 770
MhlI	GDGCHC	1 cut(s)	186
MlsI	TGGCCA	1 cut(s)	683
MluCI	AATT	2 cut(s)	303, 376
MluNI	TGGCCA	1 cut(s)	683
MlyI	GAGTC	1 cut(s)	147
Mox20I	TGGCCA	1 cut(s)	683
MscI	TGGCCA	1 cut(s)	683
MseI	TTAA	3 cut(s)	516, 531, 666
MslI	CAYNNNNRTG	1 cut(s)	570
Msp20I	TGGCCA	1 cut(s)	683
MspA1I	CMGCKG	2 cut(s)	679, 803
MspCI	CTTAAG	1 cut(s)	665
MspI	CCGG	1 cut(s)	179
MspR9I	CCNGG	2 cut(s)	180, 685
Mva1269I	GAATGC	1 cut(s)	838
MvaI	CCWGG	1 cut(s)	685
MwoI	GCNNNNNNNGC	7 cut(s)	181, 190, 244, 614, 623, 626, 809
NciI	CCSGG	1 cut(s)	180
NdeI	CATATG	1 cut(s)	371
NdeII	GATC	6 cut(s)	81, 91, 366, 568, 673, 927
NheI	GCTAGC	1 cut(s)	950
NlaIII	CATG	5 cut(s)	169, 286, 569, 575, 644
NlaIV	GGNNCC	2 cut(s)	183, 184
NspI	RCATGY	1 cut(s)	169
NspV	TTCGAA	1 cut(s)	817
PaeI	GCATGC	1 cut(s)	169
PciSI	GCTCTTC	1 cut(s)	147
PctI	GAATGC	1 cut(s)	838
PfeI	GAWTC	4 cut(s)	253, 279, 330, 466
PkrI	GCNGC	6 cut(s)	195, 604, 607, 619, 628, 802
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	683
PspFI	CCCAGC	1 cut(s)	803
PspGI	CCWGG	1 cut(s)	683
PspN4I	GGNNCC	2 cut(s)	183, 184
PspOMI	GGGCCC	1 cut(s)	182
PspPI	GGNCC	2 cut(s)	182, 183
PstI	CTGCAG	2 cut(s)	264, 802
PvuII	CAGCTG	2 cut(s)	679, 803
RsaI	GTAC	2 cut(s)	598, 874
RsaNI	GTAC	2 cut(s)	597, 873
RseI	CAYNNNNRTG	1 cut(s)	570
SapI	GCTCTTC	1 cut(s)	147
SaqAI	TTAA	3 cut(s)	516, 531, 666
SatI	GCNGC	6 cut(s)	194, 603, 606, 618, 627, 801
Sau3AI	GATC	6 cut(s)	81, 91, 366, 568, 673, 927
Sau96I	GGNCC	2 cut(s)	182, 183
ScaI	AGTACT	1 cut(s)	874
SchI	GAGTC	1 cut(s)	147
ScrFI	CCNGG	2 cut(s)	180, 685
SduI	GDGCHC	1 cut(s)	186
SfaNI	GCATC	2 cut(s)	209, 840
SfcI	CTRYAG	2 cut(s)	260, 798
SfuI	TTCGAA	1 cut(s)	817
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	1 cut(s)	665
SmoI	CTYRAG	1 cut(s)	665
SphI	GCATGC	1 cut(s)	169
Sse9I	AATT	2 cut(s)	303, 376
SsiI	CCGC	2 cut(s)	275, 671
SspMI	CTAG	4 cut(s)	483, 735, 870, 951
StyD4I	CCNGG	2 cut(s)	178, 683
TaaI	ACNGT	2 cut(s)	390, 433
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	6 cut(s)	84, 205, 392, 419, 697, 817
TasI	AATT	2 cut(s)	303, 376
TatI	WGTACW	2 cut(s)	596, 872
TfiI	GAWTC	4 cut(s)	253, 279, 330, 466
Tru1I	TTAA	3 cut(s)	516, 531, 666
Tru9I	TTAA	3 cut(s)	516, 531, 666
TscAI	CASTG	5 cut(s)	139, 404, 436, 784, 952
TseI	GCWGC	6 cut(s)	193, 602, 605, 617, 626, 800
TspDTI	ATGAA	4 cut(s)	534, 761, 771, 956
TspGWI	ACGGA	1 cut(s)	555
TspRI	CASTG	5 cut(s)	139, 404, 436, 784, 952
Vha464I	CTTAAG	1 cut(s)	665
XceI	RCATGY	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	920
XspI	CTAG	4 cut(s)	483, 735, 870, 951
ZraI	GACGTC	1 cut(s)	121
ZrmI	AGTACT	1 cut(s)	874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.