Transcription initiation factor
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g02790 |
| rosa_laevigata | RLG00000028661 RLG00000030349 RLG00000030352 RLG00000030356 RLG00000030371 RLG00000030378 RLG00000030380 RLG00000030384 RLG00000030386 RLG00000030388 |
| rosa_multiflora | Rmu_sc0000749.1_g000030 Rmu_sc0000749.1_g000053 Rmu_sc0001932.1_g000014 Rmu_sc0001932.1_g000030 Rmu_sc0002132.1_g000050 Rmu_sc0002263.1_g000033 Rmu_sc0004185.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00327000 Rroxscaffold_4G00327020 Rroxscaffold_4G00327130 Rroxscaffold_4G00327210 |
| rosa_rugosa | Rorug01G0035600 Rorug01G0035800 Rorug06G0044400 |
| rosa_samantha | Rh1AG048700 Rh1AG048800 Rh1AG048900 Rh1AG050900 Rh1AG051400 Rh1AG051700 Rh1AG051800 Rh1AG052300 Rh1AG053000 Rh1AG053100 Rh1AG053900 Rh1BG046300 Rh1CG018200 Rh1CG052600 Rh1CG052700 Rh1CG052900 Rh1CG053300 Rh1CG053400 Rh2AG524800 |
| rosa_wichuraiana | Rw1G004420 Rw1G004460 Rw1G004520 Rw1G004600 Rw1G004650 Rw1G004690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 206 |
| AclWI | GGATC | 1 cut(s) | 216 |
| AfaI | GTAC | 1 cut(s) | 133 |
| AluBI | AGCT | 4 cut(s) | 20, 52, 62, 214 |
| AluI | AGCT | 4 cut(s) | 20, 52, 62, 214 |
| AlwI | GGATC | 1 cut(s) | 216 |
| Ama87I | CYCGRG | 1 cut(s) | 219 |
| ApeKI | GCWGC | 4 cut(s) | 137, 140, 152, 161 |
| AsuC2I | CCSGG | 2 cut(s) | 220, 221 |
| AsuHPI | GGTGA | 1 cut(s) | 199 |
| AvaI | CYCGRG | 1 cut(s) | 219 |
| BbvI | GCAGC | 4 cut(s) | 139, 148, 149, 152 |
| BccI | CCATC | 1 cut(s) | 104 |
| BcnI | CCSGG | 2 cut(s) | 220, 221 |
| BfaI | CTAG | 1 cut(s) | 21 |
| BisI | GCNGC | 4 cut(s) | 138, 141, 153, 162 |
| BlsI | GCNGC | 4 cut(s) | 139, 142, 154, 163 |
| Bme1390I | CCNGG | 2 cut(s) | 220, 221 |
| BmeT110I | CYCGRG | 1 cut(s) | 219 |
| BmrFI | CCNGG | 2 cut(s) | 220, 221 |
| Bpu10I | CCTNAGC | 1 cut(s) | 63 |
| BpuEI | CTTGAG | 1 cut(s) | 185 |
| BpuMI | CCSGG | 2 cut(s) | 220, 221 |
| BsaJI | CCNNGG | 1 cut(s) | 219 |
| BseDI | CCNNGG | 1 cut(s) | 219 |
| BseMII | CTCAG | 1 cut(s) | 59 |
| BseXI | GCAGC | 4 cut(s) | 139, 148, 149, 152 |
| BsiHKCI | CYCGRG | 1 cut(s) | 219 |
| BsiSI | CCGG | 1 cut(s) | 220 |
| BsoBI | CYCGRG | 1 cut(s) | 219 |
| Bsp143I | GATC | 1 cut(s) | 208 |
| BspACI | CCGC | 1 cut(s) | 206 |
| BspCNI | CTCAG | 1 cut(s) | 58 |
| BspPI | GGATC | 1 cut(s) | 216 |
| BssECI | CCNNGG | 1 cut(s) | 219 |
| BssMI | GATC | 1 cut(s) | 208 |
| Bst6I | CTCTTC | 1 cut(s) | 21 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 149 |
| BstDEI | CTNAG | 3 cut(s) | 45, 63, 75 |
| BstKTI | GATC | 1 cut(s) | 211 |
| BstMBI | GATC | 1 cut(s) | 208 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 149, 158, 161 |
| BstSCI | CCNGG | 2 cut(s) | 218, 219 |
| BstV1I | GCAGC | 4 cut(s) | 139, 148, 149, 152 |
| BtgZI | GCGATG | 1 cut(s) | 123 |
| Cfr9I | CCCGGG | 1 cut(s) | 219 |
| Csp6I | GTAC | 1 cut(s) | 132 |
| CviAII | CATG | 2 cut(s) | 104, 176 |
| CviJI | RGCY | 5 cut(s) | 20, 44, 52, 62, 214 |
| CviKI_1 | RGCY | 5 cut(s) | 20, 44, 52, 62, 214 |
| CviQI | GTAC | 1 cut(s) | 132 |
| DdeI | CTNAG | 3 cut(s) | 45, 63, 75 |
| DpnI | GATC | 1 cut(s) | 210 |
| DpnII | GATC | 1 cut(s) | 208 |
| Eam1104I | CTCTTC | 1 cut(s) | 21 |
| EarI | CTCTTC | 1 cut(s) | 21 |
| EciI | GGCGGA | 1 cut(s) | 221 |
| Eco88I | CYCGRG | 1 cut(s) | 219 |
| FaeI | CATG | 2 cut(s) | 107, 179 |
| FaiI | YATR | 3 cut(s) | 105, 177, 182 |
| FatI | CATG | 2 cut(s) | 103, 175 |
| Fnu4HI | GCNGC | 4 cut(s) | 138, 141, 153, 162 |
| Fsp4HI | GCNGC | 4 cut(s) | 138, 141, 153, 162 |
| FspBI | CTAG | 1 cut(s) | 21 |
| GluI | GCNGC | 4 cut(s) | 138, 141, 153, 162 |
| HapII | CCGG | 1 cut(s) | 220 |
| Hin1II | CATG | 2 cut(s) | 107, 179 |
| HindIII | AAGCTT | 1 cut(s) | 50 |
| HinfI | GANTC | 1 cut(s) | 4 |
| HpaII | CCGG | 1 cut(s) | 220 |
| HphI | GGTGA | 1 cut(s) | 199 |
| Hpy188I | TCNGA | 1 cut(s) | 48 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 149, 158, 161 |
| HpyF3I | CTNAG | 3 cut(s) | 45, 63, 75 |
| Hsp92II | CATG | 2 cut(s) | 107, 179 |
| Kzo9I | GATC | 1 cut(s) | 208 |
| LpnPI | CCDG | 1 cut(s) | 20 |
| Lsp1109I | GCAGC | 4 cut(s) | 139, 148, 149, 152 |
| MaeI | CTAG | 1 cut(s) | 21 |
| MalI | GATC | 1 cut(s) | 210 |
| MboI | GATC | 1 cut(s) | 208 |
| MboII | GAAGA | 1 cut(s) | 38 |
| MnlI | CCTC | 2 cut(s) | 79, 164 |
| MseI | TTAA | 2 cut(s) | 54, 93 |
| MslI | CAYNNNNRTG | 2 cut(s) | 108, 185 |
| MspI | CCGG | 1 cut(s) | 220 |
| MspR9I | CCNGG | 2 cut(s) | 220, 221 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 149, 158, 161 |
| NciI | CCSGG | 2 cut(s) | 220, 221 |
| NdeII | GATC | 1 cut(s) | 208 |
| NlaIII | CATG | 2 cut(s) | 107, 179 |
| PfeI | GAWTC | 1 cut(s) | 4 |
| PkrI | GCNGC | 4 cut(s) | 139, 142, 154, 163 |
| RsaI | GTAC | 1 cut(s) | 133 |
| RsaNI | GTAC | 1 cut(s) | 132 |
| RseI | CAYNNNNRTG | 2 cut(s) | 108, 185 |
| SaqAI | TTAA | 2 cut(s) | 54, 93 |
| SatI | GCNGC | 4 cut(s) | 138, 141, 153, 162 |
| Sau3AI | GATC | 1 cut(s) | 208 |
| ScrFI | CCNGG | 2 cut(s) | 220, 221 |
| SetI | ASST | 5 cut(s) | 22, 54, 64, 69, 216 |
| SgeI | CNNG | 8 cut(s) | 25, 33, 47, 116, 170, 179, 188, 214 |
| SmaI | CCCGGG | 1 cut(s) | 221 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 108, 185 |
| SmlI | CTYRAG | 1 cut(s) | 200 |
| SmoI | CTYRAG | 1 cut(s) | 200 |
| SsiI | CCGC | 1 cut(s) | 206 |
| SspMI | CTAG | 1 cut(s) | 21 |
| StyD4I | CCNGG | 2 cut(s) | 218, 219 |
| TatI | WGTACW | 1 cut(s) | 131 |
| TfiI | GAWTC | 1 cut(s) | 4 |
| Tru1I | TTAA | 2 cut(s) | 54, 93 |
| Tru9I | TTAA | 2 cut(s) | 54, 93 |
| TseI | GCWGC | 4 cut(s) | 137, 140, 152, 161 |
| TspDTI | ATGAA | 1 cut(s) | 72 |
| TspMI | CCCGGG | 1 cut(s) | 219 |
| XmaI | CCCGGG | 1 cut(s) | 219 |
| XspI | CTAG | 1 cut(s) | 21 |