Rw1G004600

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001612
Physical Location & Seq
Forward (+)
8803217 .. 8804223
1007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G004600.1

Sequence Viewer

Length: 879 bp
ATGGGGTTTTCACCATTCTTCCCAAACCCTCTGTTTCCTCCTGTCAAAAACCCTAACAAGCGTAGTGCTTCTCCTCCACCAAGTAGGAAGCAAAAGGTAGCTGATGATGAGATCGACACAGATCAAGAAGGCATTGAGCAACTCCGCGACAAGATTCCCCTGCAGAAAAAGTTGGCGGGAATCACGGGGAGGTGTGGTTTGAGAATTGGTGTTGACAAAGATGTGGAGAGATGCTTGTCAATGTGTGTGGAGGAGAGAATGAGGGGGATCATATGCAATTTGATTAGACAGTCGAAGCAGCGGGTTGATTGCGAAAAATTGAGACACCACACTATTTCTACATCTGATGTGAGGCAAGAGATTATGATTCTCAACAGGAAAGCTAGGGAAGAGTTGCTGGAAAAGGCTCAGAAGCTTAATGAAGCTAAGGTTAGCACTAACGGATTTGAGGGTGTTAAGGATAAACATGACGATGCAGATGACAGAATGAGGAGAAGTACAGCAGCAGCAAATGTTGCTGCCCTTGCTGCTCTTGGAGGACATGAAATATTGGCGAAATGGAAACTTAAGGCGGATCAGCTATCCCGGGAGAAGCGTCGAGGTAAAGATGTAAACCCCCAGGCTACATCAACTGTTGGAAGAACAATGAATGGCAATGTAGAAGCGGAGAAAAGGGGCGGTGTAGAAGCTTTGGTGTCTGCAGCTGGGAGTGCTGTTGGAAAGTATGGGAGGAATGCCCAAGTTATGATGATGCCTCAAACAAAGGTGGCTAGTACTGGTAGTATATCTGTCAGGGATGTAATTGCTGTTCTGGAAAAGGACCCTCAGATGTCCAAGTCTACTCTGATATATTTGCTAATGAACACTGCTAGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

292

Amino Acids

32.26

Weight (kDa)

9.66

Isoelectric Point (pI)

41.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF4 PF05236 46 - 284 6.5e-37 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 839
AccII CGCG 1 cut(s) 147
AciI CCGC 6 cut(s) 145, 176, 301, 572, 665, 678
AclWI GGATC 2 cut(s) 275, 582
AfaI GTAC 2 cut(s) 499, 775
AflII CTTAAG 1 cut(s) 566
AjnI CCWGG 1 cut(s) 618
AluBI AGCT 7 cut(s) 101, 383, 415, 425, 580, 689, 704
AluI AGCT 7 cut(s) 101, 383, 415, 425, 580, 689, 704
Alw26I GTCTC 1 cut(s) 316
AlwI GGATC 2 cut(s) 275, 582
Ama87I CYCGRG 1 cut(s) 585
ApeKI GCWGC 6 cut(s) 298, 503, 506, 518, 527, 701
AspS9I GGNCC 1 cut(s) 820
AsuC2I CCSGG 2 cut(s) 586, 587
AsuHPI GGTGA 1 cut(s) 3
AsuNHI GCTAGC 1 cut(s) 869
AvaI CYCGRG 1 cut(s) 585
AvaII GGWCC 1 cut(s) 820
BbvI GCAGC 6 cut(s) 310, 505, 514, 515, 518, 713
BciT130I CCWGG 1 cut(s) 620
BcnI CCSGG 2 cut(s) 586, 587
BcoDI GTCTC 1 cut(s) 316
BfaI CTAG 3 cut(s) 384, 771, 870
BfmI CTRYAG 2 cut(s) 161, 699
BfrI CTTAAG 1 cut(s) 566
BisI GCNGC 6 cut(s) 299, 504, 507, 519, 528, 702
BlsI GCNGC 6 cut(s) 300, 505, 508, 520, 529, 703
BmcAI AGTACT 1 cut(s) 775
Bme1390I CCNGG 3 cut(s) 586, 587, 620
Bme18I GGWCC 1 cut(s) 820
BmeT110I CYCGRG 1 cut(s) 585
BmgT120I GGNCC 1 cut(s) 820
BmiI GGNNCC 1 cut(s) 822
BmrFI CCNGG 3 cut(s) 586, 587, 620
BmsI GCATC 3 cut(s) 221, 463, 741
BmtI GCTAGC 1 cut(s) 873
Bpu10I CCTNAGC 1 cut(s) 426
BpuMI CCSGG 2 cut(s) 586, 587
BsaJI CCNNGG 2 cut(s) 585, 618
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bse118I RCCGGY 1 cut(s) 873
Bse1I ACTGG 1 cut(s) 781
Bse3DI GCAATG 1 cut(s) 661
BseBI CCWGG 1 cut(s) 620
BseDI CCNNGG 2 cut(s) 585, 618
BseGI GGATG 1 cut(s) 802
BseMI GCAATG 1 cut(s) 661
BseMII CTCAG 2 cut(s) 422, 839
BseNI ACTGG 1 cut(s) 781
BseRI GAGGAG 3 cut(s) 63, 266, 505
BseXI GCAGC 6 cut(s) 310, 505, 514, 515, 518, 713
BseYI CCCAGC 1 cut(s) 704
Bsh1236I CGCG 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 585
BsiSI CCGG 2 cut(s) 586, 874
BsmAI GTCTC 1 cut(s) 316
BsmI GAATGC 1 cut(s) 739
BsoBI CYCGRG 1 cut(s) 585
Bsp143I GATC 4 cut(s) 111, 121, 267, 574
BspACI CCGC 6 cut(s) 145, 176, 301, 572, 665, 678
BspCNI CTCAG 2 cut(s) 421, 838
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 822
BspMAI CTGCAG 2 cut(s) 165, 703
BspOI GCTAGC 1 cut(s) 873
BspPI GGATC 2 cut(s) 275, 582
BspTI CTTAAG 1 cut(s) 566
BsrDI GCAATG 1 cut(s) 661
BsrFI RCCGGY 1 cut(s) 873
BsrI ACTGG 1 cut(s) 781
BssAI RCCGGY 1 cut(s) 873
BssECI CCNNGG 2 cut(s) 585, 618
BssMI GATC 4 cut(s) 111, 121, 267, 574
Bst2UI CCWGG 1 cut(s) 620
Bst4CI ACNGT 2 cut(s) 291, 634
Bst6I CTCTTC 1 cut(s) 384
BstAFI CTTAAG 1 cut(s) 566
BstAPI GCANNNNNTGC 1 cut(s) 515
BstC8I GCNNGC 1 cut(s) 871
BstDEI CTNAG 3 cut(s) 408, 426, 825
BstF5I GGATG 1 cut(s) 802
BstFNI CGCG 1 cut(s) 147
BstKTI GATC 4 cut(s) 114, 124, 270, 577
BstMAI GTCTC 1 cut(s) 316
BstMBI GATC 4 cut(s) 111, 121, 267, 574
BstMWI GCNNNNNNNGC 4 cut(s) 515, 524, 527, 710
BstNI CCWGG 1 cut(s) 620
BstSCI CCNGG 3 cut(s) 584, 585, 618
BstSFI CTRYAG 2 cut(s) 161, 699
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 6 cut(s) 310, 505, 514, 515, 518, 713
BtsCI GGATG 1 cut(s) 802
BtsI GCAGTG 1 cut(s) 864
BtsIMutI CAGTG 1 cut(s) 864
Cac8I GCNNGC 1 cut(s) 871
Cfr10I RCCGGY 1 cut(s) 873
Cfr13I GGNCC 1 cut(s) 820
Cfr9I CCCGGG 1 cut(s) 585
CseI GACGC 1 cut(s) 584
Csp6I GTAC 2 cut(s) 498, 774
CspCI CAANNNNNGTGG 2 cut(s) 228, 263
CviAII CATG 2 cut(s) 467, 542
CviQI GTAC 2 cut(s) 498, 774
DdeI CTNAG 3 cut(s) 408, 426, 825
DpnI GATC 4 cut(s) 113, 123, 269, 576
DpnII GATC 4 cut(s) 111, 121, 267, 574
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
EciI GGCGGA 1 cut(s) 587
Eco47I GGWCC 1 cut(s) 820
Eco88I CYCGRG 1 cut(s) 585
EcoO109I RGGNCCY 1 cut(s) 820
EcoRII CCWGG 1 cut(s) 618
FaeI CATG 2 cut(s) 470, 545
FaiI YATR 9 cut(s) 272, 274, 365, 468, 543, 726, 746, 785, 850
FatI CATG 2 cut(s) 466, 541
FauI CCCGC 2 cut(s) 169, 294
FauNDI CATATG 1 cut(s) 272
FblI GTMKAC 1 cut(s) 839
Fnu4HI GCNGC 6 cut(s) 299, 504, 507, 519, 528, 702
FokI GGATG 1 cut(s) 809
Fsp4HI GCNGC 6 cut(s) 299, 504, 507, 519, 528, 702
FspBI CTAG 3 cut(s) 384, 771, 870
GluI GCNGC 6 cut(s) 299, 504, 507, 519, 528, 702
GsaI CCCAGC 1 cut(s) 708
HapII CCGG 2 cut(s) 586, 874
HgaI GACGC 1 cut(s) 584
Hin1II CATG 2 cut(s) 470, 545
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HindIII AAGCTT 2 cut(s) 413, 687
HinfI GANTC 3 cut(s) 154, 180, 367
HpaII CCGG 2 cut(s) 586, 874
HphI GGTGA 1 cut(s) 3
Hpy166II GTNNAC 3 cut(s) 214, 613, 840
Hpy188I TCNGA 4 cut(s) 346, 411, 828, 846
Hpy188III TCNNGA 2 cut(s) 125, 812
Hpy8I GTNNAC 3 cut(s) 214, 613, 840
Hpy99I CGWCG 1 cut(s) 600
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 2 cut(s) 291, 634
HpyCH4V TGCA 4 cut(s) 163, 276, 476, 701
HpyF10VI GCNNNNNNNGC 4 cut(s) 515, 524, 527, 710
HpyF3I CTNAG 3 cut(s) 408, 426, 825
Hsp92II CATG 2 cut(s) 470, 545
Kzo9I GATC 4 cut(s) 111, 121, 267, 574
Lsp1109I GCAGC 6 cut(s) 310, 505, 514, 515, 518, 713
LweI GCATC 3 cut(s) 221, 463, 741
MaeI CTAG 3 cut(s) 384, 771, 870
MalI GATC 4 cut(s) 113, 123, 269, 576
MboI GATC 4 cut(s) 111, 121, 267, 574
MboII GAAGA 3 cut(s) 10, 401, 651
MluCI AATT 4 cut(s) 204, 277, 317, 801
MmeI TCCRAC 2 cut(s) 616, 697
MseI TTAA 3 cut(s) 417, 456, 567
MslI CAYNNNNRTG 1 cut(s) 471
MspA1I CMGCKG 2 cut(s) 301, 704
MspCI CTTAAG 1 cut(s) 566
MspI CCGG 2 cut(s) 586, 874
MspR9I CCNGG 3 cut(s) 586, 587, 620
Mva1269I GAATGC 1 cut(s) 739
MvaI CCWGG 1 cut(s) 620
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 4 cut(s) 515, 524, 527, 710
NciI CCSGG 2 cut(s) 586, 587
NdeI CATATG 1 cut(s) 272
NdeII GATC 4 cut(s) 111, 121, 267, 574
NheI GCTAGC 1 cut(s) 869
NlaIII CATG 2 cut(s) 470, 545
NlaIV GGNNCC 1 cut(s) 822
PctI GAATGC 1 cut(s) 739
PfeI GAWTC 3 cut(s) 154, 180, 367
PkrI GCNGC 6 cut(s) 300, 505, 508, 520, 529, 703
PpuMI RGGWCCY 1 cut(s) 820
Psp5II RGGWCCY 1 cut(s) 820
Psp6I CCWGG 1 cut(s) 618
PspFI CCCAGC 1 cut(s) 704
PspGI CCWGG 1 cut(s) 618
PspN4I GGNNCC 1 cut(s) 822
PspPI GGNCC 1 cut(s) 820
PspPPI RGGWCCY 1 cut(s) 820
PsrI GAACNNNNNNTAC 2 cut(s) 792, 824
PstI CTGCAG 2 cut(s) 165, 703
PvuII CAGCTG 1 cut(s) 704
RsaI GTAC 2 cut(s) 499, 775
RsaNI GTAC 2 cut(s) 498, 774
RseI CAYNNNNRTG 1 cut(s) 471
SaqAI TTAA 3 cut(s) 417, 456, 567
SatI GCNGC 6 cut(s) 299, 504, 507, 519, 528, 702
Sau3AI GATC 4 cut(s) 111, 121, 267, 574
Sau96I GGNCC 1 cut(s) 820
ScaI AGTACT 1 cut(s) 775
ScrFI CCNGG 3 cut(s) 586, 587, 620
SfaNI GCATC 3 cut(s) 221, 463, 741
SfcI CTRYAG 2 cut(s) 161, 699
SinI GGWCC 1 cut(s) 820
SmaI CCCGGG 1 cut(s) 587
SmiMI CAYNNNNRTG 1 cut(s) 471
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
Sse9I AATT 4 cut(s) 204, 277, 317, 801
SsiI CCGC 6 cut(s) 145, 176, 301, 572, 665, 678
SspI AATATT 1 cut(s) 549
SspMI CTAG 3 cut(s) 384, 771, 870
StyD4I CCNGG 3 cut(s) 584, 585, 618
TaaI ACNGT 2 cut(s) 291, 634
TaqI TCGA 3 cut(s) 114, 293, 598
TasI AATT 4 cut(s) 204, 277, 317, 801
TatI WGTACW 2 cut(s) 497, 773
TfiI GAWTC 3 cut(s) 154, 180, 367
Tru1I TTAA 3 cut(s) 417, 456, 567
Tru9I TTAA 3 cut(s) 417, 456, 567
TscAI CASTG 1 cut(s) 871
TseI GCWGC 6 cut(s) 298, 503, 506, 518, 527, 701
TspDTI ATGAA 4 cut(s) 435, 558, 662, 875
TspGWI ACGGA 1 cut(s) 456
TspMI CCCGGG 1 cut(s) 585
TspRI CASTG 1 cut(s) 871
Vha464I CTTAAG 1 cut(s) 566
VpaK11BI GGWCC 1 cut(s) 820
XmaI CCCGGG 1 cut(s) 585
XmiI GTMKAC 1 cut(s) 839
XspI CTAG 3 cut(s) 384, 771, 870
ZrmI AGTACT 1 cut(s) 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.