Rh1AG051400

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001612
Physical Location & Seq
Forward (+)
8640205 .. 8640798
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG051400.1

Sequence Viewer

Length: 594 bp
ATGGGGAGGTGCGGTTTGAGAATTGGTGTAGACAAAGATGTGGAGAGATGCTTGTCAATGTGTGTGGAGGAGAGAATGAGGGGGATCATATGCAATTTGATTAGACAGTTGAAGCAGCGGGTTGATTGCGAAAAATTGGGACACCACACTGTTTCTACATCTGATGTGAAGCAAAAAATTATGATTCTCAACAGGAAAGCTAGGGAAGAGTTGCTGGAAAAGGCTCAGAAGCATAATGAAGCTAAGGTTAGCACTAACGGATTTGAGGGTGTCAAGGATAAACATGACGATGGACATGACAAAATGAGGAGAAATACAGCAGCAGCAAATGTTGCTGCCCTTGCTGCTCTTGGAGGACATGACATATTGGTGAAATGGAAACTTAAGGTCGATCAGCTATCCTGGGAGAAGCGTCGAGGTAAAGATGTAAACCCCCAGGCTACATCAACTGTTGGAAGAACAATGAATGGCAATGTAGAAGCGGAGAAAAGGGGCGGTGTACGTAGAAGCTTTGGTGTCTGCAGCTGGGAGTGCTGTTGGAAAGTATGGGAGGAATGCCCAAGTTATGATGATGCCTCAAACAAAGGTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

197

Amino Acids

22.18

Weight (kDa)

9.16

Isoelectric Point (pI)

37.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF4 PF05236 3 - 159 2.4e-21 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 30
AciI CCGC 4 cut(s) 12, 118, 482, 495
AclWI GGATC 1 cut(s) 92
AfaI GTAC 1 cut(s) 501
AflII CTTAAG 1 cut(s) 383
AgsI TTSAA 1 cut(s) 112
AjnI CCWGG 2 cut(s) 401, 435
AluBI AGCT 5 cut(s) 200, 242, 397, 510, 525
AluI AGCT 5 cut(s) 200, 242, 397, 510, 525
AlwI GGATC 1 cut(s) 92
ApeKI GCWGC 6 cut(s) 115, 320, 323, 335, 344, 522
AsuHPI GGTGA 1 cut(s) 382
BbvI GCAGC 6 cut(s) 127, 322, 331, 332, 335, 534
BccI CCATC 1 cut(s) 284
BciT130I CCWGG 2 cut(s) 403, 437
BfaI CTAG 2 cut(s) 201, 592
BfmI CTRYAG 1 cut(s) 520
BfrI CTTAAG 1 cut(s) 383
BisI GCNGC 6 cut(s) 116, 321, 324, 336, 345, 523
BlsI GCNGC 6 cut(s) 117, 322, 325, 337, 346, 524
Bme1390I CCNGG 2 cut(s) 403, 437
BmrFI CCNGG 2 cut(s) 403, 437
BmsI GCATC 2 cut(s) 38, 562
Bpu10I CCTNAGC 1 cut(s) 243
BsaAI YACGTR 1 cut(s) 503
BsaJI CCNNGG 2 cut(s) 402, 435
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bse3DI GCAATG 1 cut(s) 478
BseBI CCWGG 2 cut(s) 403, 437
BseDI CCNNGG 2 cut(s) 402, 435
BseMI GCAATG 1 cut(s) 478
BseMII CTCAG 1 cut(s) 239
BseRI GAGGAG 2 cut(s) 83, 322
BseXI GCAGC 6 cut(s) 127, 322, 331, 332, 335, 534
BseYI CCCAGC 1 cut(s) 525
BslFI GGGAC 1 cut(s) 153
BsmFI GGGAC 1 cut(s) 153
BsmI GAATGC 1 cut(s) 560
Bsp143I GATC 2 cut(s) 84, 391
BspACI CCGC 4 cut(s) 12, 118, 482, 495
BspCNI CTCAG 1 cut(s) 238
BspMAI CTGCAG 1 cut(s) 524
BspPI GGATC 1 cut(s) 92
BspTI CTTAAG 1 cut(s) 383
BsrDI GCAATG 1 cut(s) 478
BssECI CCNNGG 2 cut(s) 402, 435
BssMI GATC 2 cut(s) 84, 391
Bst2UI CCWGG 2 cut(s) 403, 437
Bst4CI ACNGT 3 cut(s) 108, 151, 451
Bst6I CTCTTC 1 cut(s) 201
BstAFI CTTAAG 1 cut(s) 383
BstAPI GCANNNNNTGC 1 cut(s) 332
BstBAI YACGTR 1 cut(s) 503
BstDEI CTNAG 2 cut(s) 225, 243
BstKTI GATC 2 cut(s) 87, 394
BstMBI GATC 2 cut(s) 84, 391
BstMWI GCNNNNNNNGC 4 cut(s) 332, 341, 344, 531
BstNI CCWGG 2 cut(s) 403, 437
BstSCI CCNGG 2 cut(s) 401, 435
BstSFI CTRYAG 1 cut(s) 520
BstSNI TACGTA 1 cut(s) 503
BstV1I GCAGC 6 cut(s) 127, 322, 331, 332, 335, 534
BtsIMutI CAGTG 1 cut(s) 147
CseI GACGC 1 cut(s) 401
Csp6I GTAC 1 cut(s) 500
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
CviAII CATG 3 cut(s) 284, 296, 359
CviJI RGCY 8 cut(s) 200, 224, 242, 397, 440, 510, 525, 591
CviKI_1 RGCY 8 cut(s) 200, 224, 242, 397, 440, 510, 525, 591
CviQI GTAC 1 cut(s) 500
DdeI CTNAG 2 cut(s) 225, 243
DpnI GATC 2 cut(s) 86, 393
DpnII GATC 2 cut(s) 84, 391
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco105I TACGTA 1 cut(s) 503
EcoRII CCWGG 2 cut(s) 401, 435
FaeI CATG 3 cut(s) 287, 299, 362
FaqI GGGAC 1 cut(s) 153
FatI CATG 3 cut(s) 283, 295, 358
FauI CCCGC 1 cut(s) 111
FauNDI CATATG 1 cut(s) 89
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 6 cut(s) 116, 321, 324, 336, 345, 523
Fsp4HI GCNGC 6 cut(s) 116, 321, 324, 336, 345, 523
FspBI CTAG 2 cut(s) 201, 592
GluI GCNGC 6 cut(s) 116, 321, 324, 336, 345, 523
GsaI CCCAGC 1 cut(s) 529
HgaI GACGC 1 cut(s) 401
Hin1II CATG 3 cut(s) 287, 299, 362
HindIII AAGCTT 1 cut(s) 508
HinfI GANTC 1 cut(s) 184
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 3 cut(s) 31, 430, 500
Hpy188I TCNGA 2 cut(s) 163, 228
Hpy8I GTNNAC 3 cut(s) 31, 430, 500
Hpy99I CGWCG 1 cut(s) 417
HpyCH4III ACNGT 3 cut(s) 108, 151, 451
HpyCH4IV ACGT 1 cut(s) 502
HpyCH4V TGCA 2 cut(s) 93, 522
HpyF10VI GCNNNNNNNGC 4 cut(s) 332, 341, 344, 531
HpyF3I CTNAG 2 cut(s) 225, 243
HpySE526I ACGT 1 cut(s) 502
Hsp92II CATG 3 cut(s) 287, 299, 362
Kzo9I GATC 2 cut(s) 84, 391
LpnPI CCDG 7 cut(s) 178, 200, 388, 415, 422, 449, 511
Lsp1109I GCAGC 6 cut(s) 127, 322, 331, 332, 335, 534
LweI GCATC 2 cut(s) 38, 562
MaeI CTAG 2 cut(s) 201, 592
MaeII ACGT 1 cut(s) 502
MalI GATC 2 cut(s) 86, 393
MboI GATC 2 cut(s) 84, 391
MboII GAAGA 2 cut(s) 218, 468
MluCI AATT 4 cut(s) 21, 94, 134, 177
MmeI TCCRAC 2 cut(s) 433, 518
MnlI CCTC 8 cut(s) 61, 72, 259, 300, 347, 410, 544, 586
MseI TTAA 1 cut(s) 384
MslI CAYNNNNRTG 2 cut(s) 288, 368
MspA1I CMGCKG 2 cut(s) 118, 525
MspCI CTTAAG 1 cut(s) 383
MspR9I CCNGG 2 cut(s) 403, 437
Mva1269I GAATGC 1 cut(s) 560
MvaI CCWGG 2 cut(s) 403, 437
MwoI GCNNNNNNNGC 4 cut(s) 332, 341, 344, 531
NdeI CATATG 1 cut(s) 89
NdeII GATC 2 cut(s) 84, 391
NlaIII CATG 3 cut(s) 287, 299, 362
PctI GAATGC 1 cut(s) 560
PfeI GAWTC 1 cut(s) 184
PkrI GCNGC 6 cut(s) 117, 322, 325, 337, 346, 524
Ppu21I YACGTR 1 cut(s) 503
Psp6I CCWGG 2 cut(s) 401, 435
PspFI CCCAGC 1 cut(s) 525
PspGI CCWGG 2 cut(s) 401, 435
PstI CTGCAG 1 cut(s) 524
PvuII CAGCTG 1 cut(s) 525
RsaI GTAC 1 cut(s) 501
RsaNI GTAC 1 cut(s) 500
RseI CAYNNNNRTG 2 cut(s) 288, 368
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 6 cut(s) 116, 321, 324, 336, 345, 523
Sau3AI GATC 2 cut(s) 84, 391
ScrFI CCNGG 2 cut(s) 403, 437
SfaNI GCATC 2 cut(s) 38, 562
SfcI CTRYAG 1 cut(s) 520
SmiMI CAYNNNNRTG 2 cut(s) 288, 368
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
SnaBI TACGTA 1 cut(s) 503
Sse9I AATT 4 cut(s) 21, 94, 134, 177
SsiI CCGC 4 cut(s) 12, 118, 482, 495
SspMI CTAG 2 cut(s) 201, 592
StyD4I CCNGG 2 cut(s) 401, 435
TaaI ACNGT 3 cut(s) 108, 151, 451
TaiI ACGT 1 cut(s) 505
TaqI TCGA 2 cut(s) 390, 415
TasI AATT 4 cut(s) 21, 94, 134, 177
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 1 cut(s) 154
TseI GCWGC 6 cut(s) 115, 320, 323, 335, 344, 522
TspDTI ATGAA 2 cut(s) 252, 479
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 1 cut(s) 154
Vha464I CTTAAG 1 cut(s) 383
XmiI GTMKAC 1 cut(s) 30
XspI CTAG 2 cut(s) 201, 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.