Rw1G004460

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001612
Physical Location & Seq
Forward (+)
8499116 .. 8500122
1007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G004460.1

Sequence Viewer

Length: 912 bp
ATGGGGTTTTCACCATTCTTCCCAAACCCTCTGTTTCCTCCTGTCAAAAACCCTAACAAGCGTAGTGCTTCCCCACCACCAAGTAAGAAGCAAAAGGTAGCTGATGATGAGATCGACACAGATCAAGAAGGCATTGAGCAACTCCGCGACGTCGTTTCTGTCAGTGGAGTCAATCTTGTGGAAGAGCAAGAGCGCATGCTGTTGCTTTCGGGGCCCAAGAAGCAGCAAGCATCTCGAAAACTTCTGCTTCAAGAAAACCAAGAAGGGCTGGTTTTGCAGAAGATTCCCTGCAGAAAAAGTTGGCCGGAATCATGGGGAGGTAAGTCGAAGCAGCGGGTTGATTGCGAAAAATCGAGACACCACACTGTTTCTACATCTGATGTGAAGCAAGAAATTATGATTCTCAACAAGAAAGCTAGGGAAGAATTGCAGGAACTGGATCAGAAGCTTAAAGAAGCTAACGTTAGCACCAATGGATTTGAGGGTGTTAAGGACAAACATGACGATGGAGATGACAAAATGAGGAGAAGTACAGCAGCAGCAAATGTTGCTGCCCTTGCTGCTCTTGAAGGACATGACATATTGGCGAAATGGCAACTTAAGGCGGATCAGCTGGCCCAGGAGAAGAGTCGAGGTAAAGATGTAAATCACAAGGCTACATCAACTGCTGGAAGAACAATGAATGGCAATGTAGAAGCGGAGAAAAGGGGCGGTGTAGAAGCTTTGGTGTCTACAGCTGGAAGTGCTGTCGGAAAATTTGGGAGGAATTGCCAAGTTATGATGATGCCTCAAACAAAGGTGGCTAGTACTCGTAGTATATCTGTCAAGGATGTGATTGCTGTTCTGGAAAAGGAACCTCAGATGTCCAAGTCTACTCTGATCTATTTGCTAATGAACACTGCTAGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

303

Amino Acids

33.44

Weight (kDa)

9.26

Isoelectric Point (pI)

48.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF4 PF05236 109 - 295 8.4e-18 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 153
AccI GTMKAC 2 cut(s) 731, 872
AccII CGCG 1 cut(s) 147
AciI CCGC 5 cut(s) 145, 334, 605, 698, 711
AclI AACGTT 1 cut(s) 462
AclWI GGATC 2 cut(s) 447, 615
AcoI YGGCCR 1 cut(s) 302
AcsI RAATTY 1 cut(s) 755
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 2 cut(s) 532, 808
AflII CTTAAG 1 cut(s) 599
AgsI TTSAA 2 cut(s) 251, 569
AjnI CCWGG 1 cut(s) 618
AluBI AGCT 7 cut(s) 101, 416, 448, 458, 613, 722, 737
AluI AGCT 7 cut(s) 101, 416, 448, 458, 613, 722, 737
Alw26I GTCTC 1 cut(s) 349
AlwI GGATC 2 cut(s) 447, 615
AlwNI CAGNNNCTG 1 cut(s) 436
AoxI GGCC 3 cut(s) 212, 302, 615
ApaI GGGCCC 1 cut(s) 216
ApeKI GCWGC 6 cut(s) 223, 331, 536, 539, 551, 560
ApoI RAATTY 1 cut(s) 755
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 3 cut(s) 212, 213, 616
AsuHPI GGTGA 1 cut(s) 3
AsuNHI GCTAGC 1 cut(s) 902
BaeGI GKGCMC 1 cut(s) 216
BanII GRGCYC 1 cut(s) 216
BbvI GCAGC 6 cut(s) 235, 343, 538, 547, 548, 551
BccI CCATC 1 cut(s) 500
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BciT130I CCWGG 1 cut(s) 620
BcoDI GTCTC 1 cut(s) 349
BfaI CTAG 3 cut(s) 417, 804, 903
BfmI CTRYAG 2 cut(s) 289, 732
BfrI CTTAAG 1 cut(s) 599
BisI GCNGC 6 cut(s) 224, 332, 537, 540, 552, 561
BlsI GCNGC 6 cut(s) 225, 333, 538, 541, 553, 562
BmcAI AGTACT 1 cut(s) 808
Bme1390I CCNGG 1 cut(s) 620
BmgT120I GGNCC 3 cut(s) 212, 213, 616
BmiI GGNNCC 3 cut(s) 213, 214, 855
BmrFI CCNGG 1 cut(s) 620
BmsI GCATC 2 cut(s) 239, 774
BmtI GCTAGC 1 cut(s) 906
BsaBI GATNNNNATC 1 cut(s) 645
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 618
Bse118I RCCGGY 1 cut(s) 906
Bse1I ACTGG 1 cut(s) 441
Bse3DI GCAATG 1 cut(s) 694
Bse8I GATNNNNATC 1 cut(s) 645
BseBI CCWGG 1 cut(s) 620
BseDI CCNNGG 1 cut(s) 618
BseGI GGATG 1 cut(s) 835
BseJI GATNNNNATC 1 cut(s) 645
BseMI GCAATG 1 cut(s) 694
BseMII CTCAG 1 cut(s) 872
BseNI ACTGG 1 cut(s) 441
BseRI GAGGAG 1 cut(s) 538
BseSI GKGCMC 1 cut(s) 216
BseXI GCAGC 6 cut(s) 235, 343, 538, 547, 548, 551
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 3 cut(s) 214, 304, 617
BsiSI CCGG 2 cut(s) 305, 907
BsmAI GTCTC 1 cut(s) 349
BsnI GGCC 3 cut(s) 214, 304, 617
Bsp120I GGGCCC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 5 cut(s) 111, 121, 439, 607, 879
BspACI CCGC 5 cut(s) 145, 334, 605, 698, 711
BspANI GGCC 3 cut(s) 214, 304, 617
BspCNI CTCAG 1 cut(s) 871
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 3 cut(s) 213, 214, 855
BspMAI CTGCAG 1 cut(s) 293
BspOI GCTAGC 1 cut(s) 906
BspPI GGATC 2 cut(s) 447, 615
BspQI GCTCTTC 1 cut(s) 177
BspTI CTTAAG 1 cut(s) 599
BsrDI GCAATG 1 cut(s) 694
BsrFI RCCGGY 1 cut(s) 906
BsrI ACTGG 1 cut(s) 441
BssAI RCCGGY 1 cut(s) 906
BssECI CCNNGG 1 cut(s) 618
BssMI GATC 5 cut(s) 111, 121, 439, 607, 879
BssNI GRCGYC 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 620
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 2 cut(s) 177, 620
BstACI GRCGYC 1 cut(s) 150
BstAFI CTTAAG 1 cut(s) 599
BstAPI GCANNNNNTGC 1 cut(s) 548
BstC8I GCNNGC 4 cut(s) 197, 228, 615, 904
BstDEI CTNAG 1 cut(s) 858
BstF5I GGATG 1 cut(s) 835
BstFNI CGCG 1 cut(s) 147
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 5 cut(s) 114, 124, 442, 610, 882
BstMAI GTCTC 1 cut(s) 349
BstMBI GATC 5 cut(s) 111, 121, 439, 607, 879
BstMWI GCNNNNNNNGC 7 cut(s) 211, 220, 274, 548, 557, 560, 743
BstNI CCWGG 1 cut(s) 620
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 618
BstSFI CTRYAG 2 cut(s) 289, 732
BstSLI GKGCMC 1 cut(s) 216
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 6 cut(s) 235, 343, 538, 547, 548, 551
BsuRI GGCC 3 cut(s) 214, 304, 617
BtsCI GGATG 1 cut(s) 835
BtsI GCAGTG 1 cut(s) 897
BtsIMutI CAGTG 3 cut(s) 169, 363, 897
Cac8I GCNNGC 4 cut(s) 197, 228, 615, 904
CaiI CAGNNNCTG 1 cut(s) 436
CfoI GCGC 1 cut(s) 195
Cfr10I RCCGGY 1 cut(s) 906
Cfr13I GGNCC 3 cut(s) 212, 213, 616
Csp6I GTAC 2 cut(s) 531, 807
CviAII CATG 4 cut(s) 196, 312, 500, 575
CviQI GTAC 2 cut(s) 531, 807
DdeI CTNAG 1 cut(s) 858
DpnI GATC 5 cut(s) 113, 123, 441, 609, 881
DpnII GATC 5 cut(s) 111, 121, 439, 607, 879
EaeI YGGCCR 1 cut(s) 302
Eam1104I CTCTTC 2 cut(s) 177, 620
EarI CTCTTC 2 cut(s) 177, 620
EciI GGCGGA 1 cut(s) 620
Eco24I GRGCYC 1 cut(s) 216
EcoO109I RGGNCCY 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 618
EcoT38I GRGCYC 1 cut(s) 216
FaeI CATG 4 cut(s) 199, 315, 503, 578
FaiI YATR 8 cut(s) 197, 313, 398, 501, 576, 581, 779, 818
FatI CATG 4 cut(s) 195, 311, 499, 574
FauI CCCGC 1 cut(s) 327
FblI GTMKAC 2 cut(s) 731, 872
Fnu4HI GCNGC 6 cut(s) 224, 332, 537, 540, 552, 561
FokI GGATG 1 cut(s) 842
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 6 cut(s) 224, 332, 537, 540, 552, 561
FspBI CTAG 3 cut(s) 417, 804, 903
GlaI GCGC 1 cut(s) 194
GluI GCNGC 6 cut(s) 224, 332, 537, 540, 552, 561
HaeIII GGCC 3 cut(s) 214, 304, 617
HapII CCGG 2 cut(s) 305, 907
HhaI GCGC 1 cut(s) 195
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 4 cut(s) 199, 315, 503, 578
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HindIII AAGCTT 2 cut(s) 446, 720
HinfI GANTC 5 cut(s) 168, 283, 308, 400, 628
HpaII CCGG 2 cut(s) 305, 907
HphI GGTGA 1 cut(s) 3
Hpy166II GTNNAC 2 cut(s) 732, 873
Hpy188I TCNGA 5 cut(s) 379, 444, 752, 861, 879
Hpy188III TCNNGA 6 cut(s) 125, 234, 251, 354, 566, 845
Hpy8I GTNNAC 2 cut(s) 732, 873
Hpy99I CGWCG 2 cut(s) 152, 155
HpyAV CCTTC 3 cut(s) 122, 257, 563
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4IV ACGT 2 cut(s) 150, 462
HpyCH4V TGCA 3 cut(s) 277, 291, 430
HpyF10VI GCNNNNNNNGC 7 cut(s) 211, 220, 274, 548, 557, 560, 743
HpyF3I CTNAG 1 cut(s) 858
HpySE526I ACGT 2 cut(s) 150, 462
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 4 cut(s) 199, 315, 503, 578
HspAI GCGC 1 cut(s) 193
Kzo9I GATC 5 cut(s) 111, 121, 439, 607, 879
LguI GCTCTTC 1 cut(s) 177
Lsp1109I GCAGC 6 cut(s) 235, 343, 538, 547, 548, 551
LweI GCATC 2 cut(s) 239, 774
MaeI CTAG 3 cut(s) 417, 804, 903
MaeII ACGT 2 cut(s) 150, 462
MalI GATC 5 cut(s) 113, 123, 441, 609, 881
MboI GATC 5 cut(s) 111, 121, 439, 607, 879
MboII GAAGA 6 cut(s) 10, 194, 292, 434, 637, 684
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 4 cut(s) 393, 425, 755, 766
MlyI GAGTC 2 cut(s) 177, 637
MmeI TCCRAC 1 cut(s) 730
MnlI CCTC 9 cut(s) 39, 48, 311, 475, 516, 626, 756, 798, 867
MseI TTAA 3 cut(s) 450, 489, 600
MslI CAYNNNNRTG 1 cut(s) 504
MspA1I CMGCKG 3 cut(s) 334, 613, 737
MspCI CTTAAG 1 cut(s) 599
MspI CCGG 2 cut(s) 305, 907
MspR9I CCNGG 1 cut(s) 620
MvaI CCWGG 1 cut(s) 620
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 7 cut(s) 211, 220, 274, 548, 557, 560, 743
NdeII GATC 5 cut(s) 111, 121, 439, 607, 879
NheI GCTAGC 1 cut(s) 902
NlaIII CATG 4 cut(s) 199, 315, 503, 578
NlaIV GGNNCC 3 cut(s) 213, 214, 855
NspI RCATGY 1 cut(s) 199
PaeI GCATGC 1 cut(s) 199
PciSI GCTCTTC 1 cut(s) 177
PfeI GAWTC 3 cut(s) 283, 308, 400
PkrI GCNGC 6 cut(s) 225, 333, 538, 541, 553, 562
PleI GAGTC 2 cut(s) 176, 636
PpsI GAGTC 2 cut(s) 176, 636
Psp1406I AACGTT 1 cut(s) 462
Psp6I CCWGG 1 cut(s) 618
PspGI CCWGG 1 cut(s) 618
PspN4I GGNNCC 3 cut(s) 213, 214, 855
PspOMI GGGCCC 1 cut(s) 212
PspPI GGNCC 3 cut(s) 212, 213, 616
PstI CTGCAG 1 cut(s) 293
PstNI CAGNNNCTG 1 cut(s) 436
PvuII CAGCTG 2 cut(s) 613, 737
RsaI GTAC 2 cut(s) 532, 808
RsaNI GTAC 2 cut(s) 531, 807
RseI CAYNNNNRTG 1 cut(s) 504
SapI GCTCTTC 1 cut(s) 177
SaqAI TTAA 3 cut(s) 450, 489, 600
SatI GCNGC 6 cut(s) 224, 332, 537, 540, 552, 561
Sau3AI GATC 5 cut(s) 111, 121, 439, 607, 879
Sau96I GGNCC 3 cut(s) 212, 213, 616
ScaI AGTACT 1 cut(s) 808
SchI GAGTC 2 cut(s) 177, 637
ScrFI CCNGG 1 cut(s) 620
SduI GDGCHC 1 cut(s) 216
SfaNI GCATC 2 cut(s) 239, 774
SfcI CTRYAG 2 cut(s) 289, 732
SmiMI CAYNNNNRTG 1 cut(s) 504
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
SphI GCATGC 1 cut(s) 199
Sse9I AATT 4 cut(s) 393, 425, 755, 766
SsiI CCGC 5 cut(s) 145, 334, 605, 698, 711
SspMI CTAG 3 cut(s) 417, 804, 903
StyD4I CCNGG 1 cut(s) 618
TaaI ACNGT 1 cut(s) 367
TaiI ACGT 2 cut(s) 153, 465
TaqI TCGA 5 cut(s) 114, 235, 326, 353, 631
TasI AATT 4 cut(s) 393, 425, 755, 766
TatI WGTACW 2 cut(s) 530, 806
TfiI GAWTC 3 cut(s) 283, 308, 400
Tru1I TTAA 3 cut(s) 450, 489, 600
Tru9I TTAA 3 cut(s) 450, 489, 600
TscAI CASTG 3 cut(s) 169, 370, 904
TseI GCWGC 6 cut(s) 223, 331, 536, 539, 551, 560
TspDTI ATGAA 2 cut(s) 695, 908
TspRI CASTG 3 cut(s) 169, 370, 904
Vha464I CTTAAG 1 cut(s) 599
XapI RAATTY 1 cut(s) 755
XceI RCATGY 1 cut(s) 199
XmiI GTMKAC 2 cut(s) 731, 872
XspI CTAG 3 cut(s) 417, 804, 903
ZraI GACGTC 1 cut(s) 151
ZrmI AGTACT 1 cut(s) 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.