Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001612

Physical Location & Seq

Genomic Coordinates Forward (+)

8308490 .. 8308708

Gene Structure 219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG048700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGGGTTTTCACCATTCTTCCCAAACCCTTTGTTTCCTCCTGTCAAAAACCCTAACAAGCGTAGTGCTTCTCCGCCACCACTGCCATCAAGTAAGAAGCAAAAGGTAGCTGATGATGGGATCGACACAGATCAAGAAGGCATTGAGCAACTCCGCGATGTTGTTTCTGTCAGTGGAGTCAATCTTATGGAAGAGCAAGAGCGCATGCTGTTGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05016 ko05168 map03022 map05016 map05168

Pfam Domains

Protein Families

RST TAF4

Protein Analysis

72

Amino Acids

7.97

Weight (kDa)

4.89

Isoelectric Point (pI)

82.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001612)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02790
rosa_laevigata	RLG00000028661 RLG00000030349 RLG00000030352 RLG00000030356 RLG00000030371 RLG00000030378 RLG00000030380 RLG00000030384 RLG00000030386 RLG00000030388
rosa_multiflora	Rmu_sc0000749.1_g000030 Rmu_sc0000749.1_g000053 Rmu_sc0001932.1_g000014 Rmu_sc0001932.1_g000030 Rmu_sc0002132.1_g000050 Rmu_sc0002263.1_g000033 Rmu_sc0004185.1_g000003
rosa_roxburghii	Rroxscaffold_4G00327000 Rroxscaffold_4G00327020 Rroxscaffold_4G00327130 Rroxscaffold_4G00327210
rosa_rugosa	Rorug01G0035600 Rorug01G0035800 Rorug06G0044400
rosa_samantha	Rh1AG048700 Rh1AG048800 Rh1AG048900 Rh1AG050900 Rh1AG051400 Rh1AG051700 Rh1AG051800 Rh1AG052300 Rh1AG053000 Rh1AG053100 Rh1AG053900 Rh1BG046300 Rh1CG018200 Rh1CG052600 Rh1CG052700 Rh1CG052900 Rh1CG053300 Rh1CG053400 Rh2AG524800
rosa_wichuraiana	Rw1G004420 Rw1G004460 Rw1G004520 Rw1G004600 Rw1G004650 Rw1G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	156
AciI	CCGC	2 cut(s)	74, 154
AclWI	GGATC	1 cut(s)	128
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
AlwI	GGATC	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	3
BccI	CCATC	2 cut(s)	94, 110
Bsh1236I	CGCG	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	120, 130
BspACI	CCGC	2 cut(s)	74, 154
BspFNI	CGCG	1 cut(s)	156
BspPI	GGATC	1 cut(s)	128
BspQI	GCTCTTC	1 cut(s)	186
BssMI	GATC	2 cut(s)	120, 130
Bst6I	CTCTTC	1 cut(s)	186
BstC8I	GCNNGC	1 cut(s)	206
BstFNI	CGCG	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	2 cut(s)	123, 133
BstMBI	GATC	2 cut(s)	120, 130
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstNSI	RCATGY	1 cut(s)	208
BstUI	CGCG	1 cut(s)	156
BtgZI	GCGATG	1 cut(s)	171
BtsI	GCAGTG	1 cut(s)	80
BtsIMutI	CAGTG	2 cut(s)	80, 178
Cac8I	GCNNGC	1 cut(s)	206
CfoI	GCGC	1 cut(s)	204
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	1 cut(s)	110
CviKI_1	RGCY	1 cut(s)	110
DpnI	GATC	2 cut(s)	122, 132
DpnII	GATC	2 cut(s)	120, 130
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
EciI	GGCGGA	1 cut(s)	63
FaeI	CATG	1 cut(s)	208
FaiI	YATR	2 cut(s)	188, 206
FatI	CATG	1 cut(s)	204
GlaI	GCGC	1 cut(s)	203
HhaI	GCGC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	208
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HinfI	GANTC	1 cut(s)	177
HphI	GGTGA	1 cut(s)	3
Hpy188III	TCNNGA	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	131
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
Hsp92II	CATG	1 cut(s)	208
HspAI	GCGC	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	120, 130
LguI	GCTCTTC	1 cut(s)	186
LpnPI	CCDG	1 cut(s)	54
MalI	GATC	2 cut(s)	122, 132
MboI	GATC	2 cut(s)	120, 130
MboII	GAAGA	2 cut(s)	10, 203
MlyI	GAGTC	1 cut(s)	186
MnlI	CCTC	1 cut(s)	48
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	82
NdeII	GATC	2 cut(s)	120, 130
NlaIII	CATG	1 cut(s)	208
NspI	RCATGY	1 cut(s)	208
PaeI	GCATGC	1 cut(s)	208
PciSI	GCTCTTC	1 cut(s)	186
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
SapI	GCTCTTC	1 cut(s)	186
Sau3AI	GATC	2 cut(s)	120, 130
SchI	GAGTC	1 cut(s)	186
SetI	ASST	2 cut(s)	108, 112
SgeI	CNNG	6 cut(s)	53, 70, 102, 146, 167, 209
SphI	GCATGC	1 cut(s)	208
SsiI	CCGC	2 cut(s)	74, 154
TaqI	TCGA	1 cut(s)	123
TscAI	CASTG	2 cut(s)	87, 178
TspRI	CASTG	2 cut(s)	87, 178
XceI	RCATGY	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.