Rorug01G0035800

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001612
Physical Location & Seq
Reverse (-)
6020141 .. 6024253
4113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0035800.1

Sequence Viewer

Length: 4113 bp
ATGGCAGTGGGAGAGATCTTTCTTGCGGCATTCCTTCAGTTGCTGCTGGACAGGTTAACGCCTGGGGAGATCCTTGGCTACTTTGGAAGCTCGGGAGGAGTTGGCAAAAAGCTCCAGAAATGGAGGGAGACACTTTCCGCAGTTGCAGCGGTGCTTTCCGATGCGGAGGAGAAGCAGCTGACGAGCAAGGCAGTGGATCTGTGGCTGACTGATCTCAGACACTTGGCTTATGATCTGGACGATCTACTCAGCACCTTTTCTAATGAGATGTTAACACGCAAGCAGCTCAAGGTTGACCAAACTGGCACAAGAAAGGTACGAGGCTTCTTTACCGAAGTTCCTCACAAAGTTAAGTTCAATTTCAATATGAACTCCGAAATAGACGAGATTGCTAACCGCTTGCAAGACATATTTGACCGGAAAGAGAAACTCGGTTTGAAATATATTGAGCATACCTCTACTTCAACATCGTCATCGCACAGGACACCAAGTTCATATGTGTTGGATGGACCTGTGGTTGGGAGAGATGAAGACACAAGAAAGATTGTGGAATTGTTGTCCAGAGATGCTGATCTTTCTTCTACCACCAAATATCAAGTTGTTGCCATTGTTGGTATGGGAGGACTCGGCAAGACAACGCTTGCGGGACAAGTCTTCAATGATGTAGCTGCAATGGAACAGTTTGAACTCAAGGTCTGGGTTTCAGTGTCTGATGACTTCGATCTTCAAACGGTGACGAGAGCTATTTTTAAGGAAGTTACATCTCGGCCTTGTGATATGGATGAGTTCAGTCGACTTCAAGATAATCTGAGCAAGGAGATCGATGGTAAAAGGTTTTTGATTGTTTTAGATGATGTCTGGAGCACGTGTGGTTATGATTCATGGACAAAACTGCAAGCTCCCTTTCGTAGGGGAGCTAAGGGAAGTAAGGTAATGGTGACAACACGTGATGAAAAAGTTGCCGCAATTATGGGAGCCCCAGCCGCTGAAATTTATTATTTAAAGACTCTATCAGATGAAGGTTGTTTGCAAGTATTTGAGCAGCATGTTAGCAATGATAGGCCACCGAATTTCGAGTTGCTTGAGAAGAAAATTGTTACGAAATGCAGTGGATTGCCATTGGCTGCAAAAGTTCTTGGTGGTGTTTTACGTTGTTGTAAAGAAACTGGCAAATGGGAGGAAATACTGGATGACAAATTATGGAGTATATCAGATGGGAGTGAAATAGTCCCAGTACTGAGATTGAGTTATCATTATCTCCCTTCAACTTTGAAGAGGTGCTTTGTTTATTGCTCAATATTTCCCAATGACTACAAATTTGAGAAAACCCAATTAATCCTTCTGTGGATGGCAGAGGGTTTCCTTGAGCAACCAGAAGGGACTAAAGCGATGGAAGACATCGGTGATGAATATTTAGAGGAGCTACTGTCTCGGTCATTATTTCAAAGTGCGGGCAAAAACAGTTCATGCTATGTAATGCACGACCTTGTTGGTGATTTGGCACGATGGGCTGCTGGAGACACATTTTGCAGATTGGAGGATAAACTGCATGGTCGATGTTCTGCAAACACTCGTCATCTGGCTTACATTTCTAGTAAGTTTGATGGGAGAAAAAGATTTGAGACATTTTCTGAAGCAAAACGATTGCGGACTTTCCTCCCACTCCCTGTTTCCGGTGGTTATGAGAATTATCTAACTCGTTATGCTACTTTTGATTTATTGCCACAATTGAAGTACTTGCGGCTGCTCTCCTTCAATGGCTATAAACTGACCAAGGTGCCAAATTCCGTAGGTAAGTTGAGACATCTACGGTACCTTGATCTTTCTCACACATTAATAACGTGTTTGCCTGAGTCAACATGCATGCTTTACAACTTACAGACGTTAATATTAGAGAATTGTTCAAAATTGAAGACACTACCTTCAAACATGAGCAATTTATCTAATTTACGTCATCTCAACAATTCAAACATGCCTTCATTGGAAGAAATGCCTCCCAAAGTAAGTCGGTTGACTCATCTGCGAACTTTGCCTAATTTTGTGGTGGGGAAAGGTAGTGCATCAGGGATTGGAGAGATGCAGTCATTGCATCTTCGTGGGACCTTGAGTGTTGGAAGATTGGAAAATGTGATTGATGTTGGGGATGCGAAGACGGCTCAAATAATGAACAAGGAAGGGCTGGAAATCTTGCAATTGGAATGGAGCGGCACAAGCGAGAAGGAGTTGGAGGTGCTGTGCAGTTTAGAACCTCATAAAAAGCTTGAGGAGCTGACCATCAAGGGCTACAATGGTTTCGAATTTTCAAAATGGATTGGACATCCTTCATTCTCTGATATGACGTCTGTGAAATTGGAGAATTGTAAAAACTGTCGATTCTTACCTCCTCTTGGCCAATTACCTTTCCTGAAAAATCTTCAGATACAAGGACTGGTCAATGTTGAAAGTGTGGGTGCTGAGTTTTATGGAGAGTGCAGCTTGCCTTTTCCAGTGTTGGAATGCATGACGTTCCAGGACATGCAAAATTGGAAGGAGTGGCTTCCTTGCAAAAGAGATGAAGAAATTCGGGTTTTCCCATGCATGGAAAAGCTTTCCATCCTTAGGTGCCCAAAATTGAAAGGTTGGTTGCCCAAGAACATGGATTCATTATCAGAGCTGTATATTGATGAATGTGAAGAGTTAGTGGTTTCAATTGCCAATTATAAACATATACATAAGTTGACCATCAACGGTTGTAAAAGGGTGGTGCACGGTAGTGGAGTTAAGTTTGAGCTGCTGGAGGATATGGGGCTTTCAAGTATTTCAGAGTTCAGACTCGAAATAGACGGGTTCATCAGAGGATTGCCAAAGCTTCAAAATTTGTGGATTACTGGTTGTGAAGAGTTGACATGTTTATGGGAGAATGAGGATAGATGGCTGCAGTGTCCAATTTCTAATATTATTGGAGGCAACATATCTGACTCCCCCTCTCACTTTATTCAAGAGCTAAGAGCACTCAAGGCACTTGTGCTAACTGGATGCTCAAATCTAATTTCTTTTCCAGAAGCTAGTTGGCCACCTTGTCTTGAAAATGTAAAGATGGAGTCGTGTAATTCTTTGACATATTTCGTAAGGTATCAAGTACCGTCAAGCATAAGAAGAATAGAGATAGCAAAATGTCAAAATTTGATACTATTAGTCAAGGATGCTGGGGAGCTAGAGGGTTGTCTGGAGGACTTGGCGATTAGAGAGTGTGCGTCGTTGACATCCTTATCAGGCAAAGGAGGCCGACTACCCAGAACGCTCAAATATCTTAAATTAAGTGACTGTGAACAACTGGAGTCCATAATCAAAACATTCCACAAGGACACTTGTCTTGAAGATGTTAGGGTAGAGACGTGTGCAAATCTCAGATCCTTACCAGAGGGGCTATGCCATCTCTCCGCTCTTCGCAAGTTATTTATAGATGAATGTGGAAGTCTCGTTTCCTTCCCAAGAGGAGGGCTGCCATCCAACCTGAGAGGCTTGTGGATCTACGAGTGTGATCAATTGGAAGCCCTCCCCAGAGGCATGGACAACCTCAGCTCTCTTCGGACTTTGGTGGTGAGATCCTGTGGAGGTTTGGCATCCATTCTAGAAGAGGGTTTCCCACCCAACCTAATTACTCTTCAAATTGGCAATCGCACTCTTTCAGCCCAAATCTCCATTGGGCTTCACCACTTGGACAGACTCACCTCTCTTCAATTATTGCGTCTCACTGGTGTAGATCCAGATCTGGTGTCCTTTCCGCCAAAGGAGGTGCTGCTCCCTAAATCTCTCATTATACTCACCATTGGAAACTTCCCAAATCTGAAGCGCCTGTCATCATCTTTTCAATCACTCACCTCTCTTCAATGCCTTAACATTTGGGATTGTCCGAAGCTAGCATCTATTATCCCAGAACAAGAGGATCATCTGCCTCATTCACTTACACAGCTTCGCATCCGTAAGGGCTGTCCGCTGCTCACAAAGAAATACCAACCAGGTAAAGGACGACACTGGCCCAAAGAAATAGCCCACATCCCTTACGTTTATTTTGGAGACTGGAAGGACGAAGCCGAAGCCGACCGCCGGACATTTGGTATTGTCCGAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

1370

Amino Acids

154.56

Weight (kDa)

6.45

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 11 - 99 4.9e-17 Rx N-terminal domain
NB-ARC PF00931 192 - 352 4.1e-37 NB-ARC domain
WHD_DRP PF23559 433 - 501 1.8e-25 Disease resistance protein Winged helix domain
LRR_14 PF23598 574 - 840 1.9e-21 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 690 - 809 8.3e-34 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2700
AatII GACGTC 1 cut(s) 2342
Acc65I GGTACC 1 cut(s) 1812
AccB1I GGYRCC 3 cut(s) 1777, 1812, 2601
AccBSI CCGCTC 2 cut(s) 2205, 3422
AccI GTMKAC 1 cut(s) 793
AclWI GGATC 7 cut(s) 64, 204, 3384, 3515, 3579, 3737, 3933
AcoI YGGCCR 2 cut(s) 2389, 3050
AcsI RAATTY 8 cut(s) 990, 1069, 1316, 1783, 2297, 2559, 2854, 3160
AcuI CTGAAG 4 cut(s) 20, 1653, 2399, 3848
AcvI CACGTG 2 cut(s) 867, 947
AcyI GRCGYC 1 cut(s) 2339
AfaI GTAC 5 cut(s) 318, 1236, 1736, 1814, 3120
AfiI CCNNNNNNNGG 9 cut(s) 518, 909, 1673, 2387, 2578, 2598, 3476, 4004, 4086
AflIII ACRYGT 5 cut(s) 866, 944, 1841, 2885, 3374
AjiI CACGTC 1 cut(s) 3375
AjnI CCWGG 3 cut(s) 61, 2508, 3997
AjuI GAANNNNNNNTTGG 2 cut(s) 1323, 1355
AleI CACNNNNGTG 1 cut(s) 2751
AloI GAACNNNNNNTCC 2 cut(s) 475, 507
Alw21I GWGCWC 3 cut(s) 866, 2748, 2992
Alw26I GTCTC 9 cut(s) 122, 1434, 1512, 1616, 1795, 3365, 3461, 3734, 4050
Alw44I GTGCAC 1 cut(s) 2744
AlwI GGATC 7 cut(s) 64, 204, 3384, 3515, 3579, 3737, 3933
AlwNI CAGNNNCTG 3 cut(s) 43, 710, 986
Ama87I CYCGRG 1 cut(s) 91
AoxI GGCC 6 cut(s) 767, 1061, 2389, 3050, 3262, 4016
ApaLI GTGCAC 1 cut(s) 2744
ApoI RAATTY 8 cut(s) 990, 1069, 1316, 1783, 2297, 2559, 2854, 3160
ArsI GACNNNNNNTTYG 2 cut(s) 1301, 1333
AseI ATTAAT 2 cut(s) 1334, 1835
Asp700I GAANNNNTTC 1 cut(s) 2559
Asp718I GGTACC 1 cut(s) 1812
AspLEI GCGC 1 cut(s) 3834
AspS9I GGNCC 3 cut(s) 509, 2100, 4017
AsuHPI GGTGA 9 cut(s) 745, 949, 1415, 1505, 3592, 3683, 3700, 3796, 3850
AsuII TTCGAA 1 cut(s) 2295
AsuNHI GCTAGC 1 cut(s) 3898
AvaI CYCGRG 1 cut(s) 91
AvaII GGWCC 2 cut(s) 509, 2100
AxyI CCTNAGG 1 cut(s) 2597
BaeGI GKGCMC 2 cut(s) 2606, 2748
BalI TGGCCA 2 cut(s) 2391, 3052
BanI GGYRCC 3 cut(s) 1777, 1812, 2601
BanII GRGCYC 1 cut(s) 979
BbrPI CACGTG 2 cut(s) 867, 947
BbsI GAAGAC 5 cut(s) 537, 646, 1401, 1919, 2156
Bbv12I GWGCWC 3 cut(s) 866, 2748, 2992
BbvCI CCTCAGC 1 cut(s) 3557
BceAI ACGGC 1 cut(s) 2169
BcgI CGANNNNNNTGC 2 cut(s) 802, 836
BciT130I CCWGG 3 cut(s) 63, 2510, 3999
BclI TGATCA 1 cut(s) 3520
BcoDI GTCTC 9 cut(s) 122, 1434, 1512, 1616, 1795, 3365, 3461, 3734, 4050
BfaI CTAG 6 cut(s) 1593, 3045, 3194, 3611, 3899, 4111
BfmI CTRYAG 1 cut(s) 2915
BfoI RGCGCY 1 cut(s) 3835
BglII AGATCT 2 cut(s) 15, 3748
BmcAI AGTACT 2 cut(s) 1236, 1736
Bme1390I CCNGG 3 cut(s) 63, 2510, 3999
Bme18I GGWCC 2 cut(s) 509, 2100
BmeT110I CYCGRG 1 cut(s) 91
BmgBI CACGTC 1 cut(s) 3375
BmgT120I GGNCC 3 cut(s) 509, 2100, 4017
BmiI GGNNCC 5 cut(s) 976, 1779, 1814, 2101, 2603
BmrFI CCNGG 3 cut(s) 63, 2510, 3999
BmrI ACTGGG 1 cut(s) 1226
BmtI GCTAGC 1 cut(s) 3902
BmuI ACTGGG 1 cut(s) 1226
BoxI GACNNNNGTC 1 cut(s) 3348
BpiI GAAGAC 5 cut(s) 537, 646, 1401, 1919, 2156
BplI GAGNNNNNCTC 2 cut(s) 440, 472
BpmI CTGGAG 6 cut(s) 98, 880, 1536, 2795, 3227, 3335
Bpu10I CCTNAGC 2 cut(s) 918, 3557
Bpu14I TTCGAA 1 cut(s) 2295
BpuEI CTTGAG 7 cut(s) 272, 674, 1103, 1385, 2125, 2282, 2978
Bsa29I ATCGAT 1 cut(s) 822
BsaAI YACGTR 2 cut(s) 867, 947
BsaBI GATNNNNATC 2 cut(s) 570, 3747
BsaHI GRCGYC 1 cut(s) 2339
BsaJI CCNNGG 3 cut(s) 62, 73, 1773
BsaWI WCCGGW 2 cut(s) 417, 1673
BsaXI ACNNNNNCTCC 6 cut(s) 853, 883, 1412, 1442, 2219, 2249
Bsc4I CCNNNNNNNGG 9 cut(s) 518, 909, 1673, 2387, 2578, 2598, 3476, 4004, 4086
Bse21I CCTNAGG 1 cut(s) 2597
Bse3DI GCAATG 3 cut(s) 678, 1060, 2084
Bse8I GATNNNNATC 2 cut(s) 570, 3747
BseBI CCWGG 3 cut(s) 63, 2510, 3999
BseCI ATCGAT 1 cut(s) 822
BseDI CCNNGG 3 cut(s) 62, 73, 1773
BseJI GATNNNNATC 2 cut(s) 570, 3747
BseLI CCNNNNNNNGG 9 cut(s) 518, 909, 1673, 2387, 2578, 2598, 3476, 4004, 4086
BseMI GCAATG 3 cut(s) 678, 1060, 2084
BseMII CTCAG 9 cut(s) 229, 262, 800, 1229, 1842, 2445, 3400, 3485, 3571
BseRI GAGGAG 6 cut(s) 111, 182, 1433, 2279, 2373, 3489
BseSI GKGCMC 2 cut(s) 2606, 2748
BseYI CCCAGC 2 cut(s) 979, 3185
BsgI GTGCAG 2 cut(s) 2257, 2491
Bsh1285I CGRYCG 1 cut(s) 4084
BshFI GGCC 6 cut(s) 769, 1063, 2391, 3052, 3264, 4018
BshNI GGYRCC 3 cut(s) 1777, 1812, 2601
BshVI ATCGAT 1 cut(s) 822
BsiEI CGRYCG 1 cut(s) 4084
BsiHKAI GWGCWC 3 cut(s) 866, 2748, 2992
BsiHKCI CYCGRG 1 cut(s) 91
BsiSI CCGG 3 cut(s) 418, 1674, 4087
BslFI GGGAC 4 cut(s) 660, 1214, 1393, 2113
BslI CCNNNNNNNGG 9 cut(s) 518, 909, 1673, 2387, 2578, 2598, 3476, 4004, 4086
BsmAI GTCTC 9 cut(s) 122, 1434, 1512, 1616, 1795, 3365, 3461, 3734, 4050
BsmBI CGTCTC 2 cut(s) 3365, 3734
BsmFI GGGAC 4 cut(s) 660, 1214, 1393, 2113
BsmI GAATGC 2 cut(s) 29, 2501
BsnI GGCC 6 cut(s) 769, 1063, 2391, 3052, 3264, 4018
BsoBI CYCGRG 1 cut(s) 91
Bsp119I TTCGAA 1 cut(s) 2295
Bsp1286I GDGCHC 5 cut(s) 866, 979, 2606, 2748, 2992
BspANI GGCC 6 cut(s) 769, 1063, 2391, 3052, 3264, 4018
BspCNI CTCAG 9 cut(s) 228, 261, 801, 1230, 1843, 2446, 3399, 3486, 3570
BspDI ATCGAT 1 cut(s) 822
BspLI GGNNCC 5 cut(s) 976, 1779, 1814, 2101, 2603
BspMAI CTGCAG 1 cut(s) 2919
BspOI GCTAGC 1 cut(s) 3902
BspPI GGATC 7 cut(s) 64, 204, 3384, 3515, 3579, 3737, 3933
BspQI GCTCTTC 1 cut(s) 3429
BspT104I TTCGAA 1 cut(s) 2295
BspT107I GGYRCC 3 cut(s) 1777, 1812, 2601
BsrBI CCGCTC 2 cut(s) 2205, 3422
BsrDI GCAATG 3 cut(s) 678, 1060, 2084
BssECI CCNNGG 3 cut(s) 62, 73, 1773
BssNI GRCGYC 1 cut(s) 2339
BssT1I CCWWGG 2 cut(s) 73, 1773
Bst2UI CCWGG 3 cut(s) 63, 2510, 3999
Bst6I CTCTTC 9 cut(s) 1268, 2667, 2871, 3429, 3570, 3609, 3648, 3720, 3870
BstACI GRCGYC 1 cut(s) 2339
BstAPI GCANNNNNTGC 1 cut(s) 2086
BstBAI YACGTR 2 cut(s) 867, 947
BstBI TTCGAA 1 cut(s) 2295
BstC8I GCNNGC 8 cut(s) 281, 401, 642, 897, 1453, 1865, 2477, 3900
BstENI CCTNNNNNAGG 1 cut(s) 907
BstH2I RGCGCY 1 cut(s) 3835
BstHHI GCGC 1 cut(s) 3834
BstMAI GTCTC 9 cut(s) 122, 1434, 1512, 1616, 1795, 3365, 3461, 3734, 4050
BstMCI CGRYCG 1 cut(s) 4084
BstNI CCWGG 3 cut(s) 63, 2510, 3999
BstNSI RCATGY 6 cut(s) 1049, 1863, 1867, 1975, 2518, 2889
BstPAI GACNNNNGTC 1 cut(s) 3348
BstSCI CCNGG 3 cut(s) 61, 2508, 3997
BstSFI CTRYAG 1 cut(s) 2915
BstSLI GKGCMC 2 cut(s) 2606, 2748
BstV2I GAAGAC 5 cut(s) 537, 646, 1401, 1919, 2156
BstX2I RGATCY 8 cut(s) 15, 69, 196, 3389, 3507, 3584, 3742, 3748
BstXI CCANNNNNNTGG 2 cut(s) 2635, 3547
BstYI RGATCY 8 cut(s) 15, 69, 196, 3389, 3507, 3584, 3742, 3748
Bsu15I ATCGAT 1 cut(s) 822
Bsu36I CCTNAGG 1 cut(s) 2597
BsuRI GGCC 6 cut(s) 769, 1063, 2391, 3052, 3264, 4018
BsuTUI ATCGAT 1 cut(s) 822
BtgZI GCGATG 2 cut(s) 459, 1403
BtrI CACGTC 1 cut(s) 3375
BtsI GCAGTG 4 cut(s) 12, 198, 1114, 2924
BtsIMutI CAGTG 8 cut(s) 12, 198, 711, 1114, 2493, 2924, 3732, 4012
Cac8I GCNNGC 8 cut(s) 281, 401, 642, 897, 1453, 1865, 2477, 3900
CaiI CAGNNNCTG 3 cut(s) 43, 710, 986
CfoI GCGC 1 cut(s) 3834
Cfr13I GGNCC 3 cut(s) 509, 2100, 4017
ClaI ATCGAT 1 cut(s) 822
CseI GACGC 2 cut(s) 3222, 3716
CsiI ACCWGGT 1 cut(s) 3997
Csp6I GTAC 5 cut(s) 317, 1235, 1735, 1813, 3119
CspCI CAANNNNNGTGG 2 cut(s) 2840, 2875
CviQI GTAC 5 cut(s) 317, 1235, 1735, 1813, 3119
DraI TTTAAA 1 cut(s) 1002
EaeI YGGCCR 2 cut(s) 2389, 3050
Eam1104I CTCTTC 9 cut(s) 1268, 2667, 2871, 3429, 3570, 3609, 3648, 3720, 3870
EarI CTCTTC 9 cut(s) 1268, 2667, 2871, 3429, 3570, 3609, 3648, 3720, 3870
EciI GGCGGA 1 cut(s) 3753
Eco130I CCWWGG 2 cut(s) 73, 1773
Eco24I GRGCYC 1 cut(s) 979
Eco47I GGWCC 2 cut(s) 509, 2100
Eco57I CTGAAG 4 cut(s) 20, 1653, 2399, 3848
Eco72I CACGTG 2 cut(s) 867, 947
Eco81I CCTNAGG 1 cut(s) 2597
Eco88I CYCGRG 1 cut(s) 91
EcoNI CCTNNNNNAGG 1 cut(s) 907
EcoO109I RGGNCCY 1 cut(s) 2100
EcoRII CCWGG 3 cut(s) 61, 2508, 3997
EcoT14I CCWWGG 2 cut(s) 73, 1773
EcoT22I ATGCAT 3 cut(s) 1865, 2501, 2579
EcoT38I GRGCYC 1 cut(s) 979
ErhI CCWWGG 2 cut(s) 73, 1773
Esp3I CGTCTC 2 cut(s) 3365, 3734
FalI AAGNNNNNCTT 2 cut(s) 1265, 1297
FaqI GGGAC 4 cut(s) 660, 1214, 1393, 2113
FauI CCCGC 2 cut(s) 637, 1444
FauNDI CATATG 1 cut(s) 496
FbaI TGATCA 1 cut(s) 3520
FblI GTMKAC 1 cut(s) 793
FriOI GRGCYC 1 cut(s) 979
FspBI CTAG 6 cut(s) 1593, 3045, 3194, 3611, 3899, 4111
GlaI GCGC 1 cut(s) 3833
GsaI CCCAGC 2 cut(s) 983, 3189
GsuI CTGGAG 6 cut(s) 98, 880, 1536, 2795, 3227, 3335
HaeII RGCGCY 1 cut(s) 3835
HaeIII GGCC 6 cut(s) 769, 1063, 2391, 3052, 3264, 4018
HapII CCGG 3 cut(s) 418, 1674, 4087
HgaI GACGC 2 cut(s) 3222, 3716
HhaI GCGC 1 cut(s) 3834
Hin1I GRCGYC 1 cut(s) 2339
Hin6I GCGC 1 cut(s) 3832
HinP1I GCGC 1 cut(s) 3832
HincII GTYRAC 9 cut(s) 57, 273, 295, 794, 1857, 2013, 2718, 2883, 3240
HindII GTYRAC 9 cut(s) 57, 273, 295, 794, 1857, 2013, 2718, 2883, 3240
HindIII AAGCTT 3 cut(s) 2258, 2585, 2846
HpaI GTTAAC 2 cut(s) 57, 273
HpaII CCGG 3 cut(s) 418, 1674, 4087
HphI GGTGA 9 cut(s) 745, 949, 1415, 1505, 3592, 3683, 3700, 3796, 3850
Hpy99I CGWCG 1 cut(s) 3238
Hsp92I GRCGYC 1 cut(s) 2339
HspAI GCGC 1 cut(s) 3832
KpnI GGTACC 1 cut(s) 1816
Ksp22I TGATCA 1 cut(s) 3520
KspAI GTTAAC 2 cut(s) 57, 273
LguI GCTCTTC 1 cut(s) 3429
MabI ACCWGGT 1 cut(s) 3997
MaeI CTAG 6 cut(s) 1593, 3045, 3194, 3611, 3899, 4111
MaeIII GTNAC 5 cut(s) 733, 757, 937, 1096, 3299
MbiI CCGCTC 2 cut(s) 2205, 3422
MfeI CAATTG 4 cut(s) 1727, 2192, 2688, 3524
MflI RGATCY 8 cut(s) 15, 69, 196, 3389, 3507, 3584, 3742, 3748
MhlI GDGCHC 5 cut(s) 866, 979, 2606, 2748, 2992
MlsI TGGCCA 2 cut(s) 2391, 3052
MluNI TGGCCA 2 cut(s) 2391, 3052
MlyI GAGTC 9 cut(s) 618, 1000, 1862, 2008, 2805, 2951, 3089, 3326, 3699
MmeI TCCRAC 5 cut(s) 483, 2092, 2205, 2472, 3513
Mox20I TGGCCA 2 cut(s) 2391, 3052
Mph1103I ATGCAT 3 cut(s) 1865, 2501, 2579
MroXI GAANNNNTTC 1 cut(s) 2559
MscI TGGCCA 2 cut(s) 2391, 3052
MslI CAYNNNNRTG 3 cut(s) 2094, 2751, 2890
Msp20I TGGCCA 2 cut(s) 2391, 3052
MspA1I CMGCKG 4 cut(s) 149, 178, 986, 3976
MspI CCGG 3 cut(s) 418, 1674, 4087
MspR9I CCNGG 3 cut(s) 63, 2510, 3999
MunI CAATTG 4 cut(s) 1727, 2192, 2688, 3524
Mva1269I GAATGC 2 cut(s) 29, 2501
MvaI CCWGG 3 cut(s) 63, 2510, 3999
NdeI CATATG 1 cut(s) 496
NheI GCTAGC 1 cut(s) 3898
NlaIV GGNNCC 5 cut(s) 976, 1779, 1814, 2101, 2603
NmeAIII GCCGAG 2 cut(s) 606, 745
NmuCI GTSAC 3 cut(s) 733, 937, 3299
NsiI ATGCAT 3 cut(s) 1865, 2501, 2579
NspI RCATGY 6 cut(s) 1049, 1863, 1867, 1975, 2518, 2889
NspV TTCGAA 1 cut(s) 2295
OliI CACNNNNGTG 1 cut(s) 2751
PaeI GCATGC 1 cut(s) 1867
PciI ACATGT 1 cut(s) 2885
PciSI GCTCTTC 1 cut(s) 3429
PctI GAATGC 2 cut(s) 29, 2501
PdmI GAANNNNTTC 1 cut(s) 2559
PfeI GAWTC 3 cut(s) 878, 2373, 2639
PfoI TCCNGGA 1 cut(s) 2508
PleI GAGTC 9 cut(s) 618, 1000, 1861, 2008, 2805, 2951, 3088, 3325, 3699
PmaCI CACGTG 2 cut(s) 867, 947
PmlI CACGTG 2 cut(s) 867, 947
PpsI GAGTC 9 cut(s) 618, 1000, 1861, 2008, 2805, 2951, 3088, 3325, 3699
Ppu21I YACGTR 2 cut(s) 867, 947
PpuMI RGGWCCY 1 cut(s) 2100
PscI ACATGT 1 cut(s) 2885
PshAI GACNNNNGTC 1 cut(s) 3348
PshBI ATTAAT 2 cut(s) 1334, 1835
PsiI TTATAA 1 cut(s) 2700
Psp5II RGGWCCY 1 cut(s) 2100
Psp6I CCWGG 3 cut(s) 61, 2508, 3997
PspCI CACGTG 2 cut(s) 867, 947
PspFI CCCAGC 2 cut(s) 979, 3185
PspGI CCWGG 3 cut(s) 61, 2508, 3997
PspN4I GGNNCC 5 cut(s) 976, 1779, 1814, 2101, 2603
PspPI GGNCC 3 cut(s) 509, 2100, 4017
PspPPI RGGWCCY 1 cut(s) 2100
PstI CTGCAG 1 cut(s) 2919
PstNI CAGNNNCTG 3 cut(s) 43, 710, 986
PsuI RGATCY 8 cut(s) 15, 69, 196, 3389, 3507, 3584, 3742, 3748
PvuII CAGCTG 1 cut(s) 178
RsaI GTAC 5 cut(s) 318, 1236, 1736, 1814, 3120
RsaNI GTAC 5 cut(s) 317, 1235, 1735, 1813, 3119
RseI CAYNNNNRTG 3 cut(s) 2094, 2751, 2890
SalI GTCGAC 1 cut(s) 792
SapI GCTCTTC 1 cut(s) 3429
Sau96I GGNCC 3 cut(s) 509, 2100, 4017
ScaI AGTACT 2 cut(s) 1236, 1736
SchI GAGTC 9 cut(s) 618, 1000, 1862, 2008, 2805, 2951, 3089, 3326, 3699
ScrFI CCNGG 3 cut(s) 63, 2510, 3999
SduI GDGCHC 5 cut(s) 866, 979, 2606, 2748, 2992
SexAI ACCWGGT 1 cut(s) 3997
SfcI CTRYAG 1 cut(s) 2915
SfuI TTCGAA 1 cut(s) 2295
SinI GGWCC 2 cut(s) 509, 2100
SmiMI CAYNNNNRTG 3 cut(s) 2094, 2751, 2890
SmlI CTYRAG 7 cut(s) 287, 689, 1082, 1364, 2104, 2261, 2993
SmoI CTYRAG 7 cut(s) 287, 689, 1082, 1364, 2104, 2261, 2993
SphI GCATGC 1 cut(s) 1867
SspI AATATT 4 cut(s) 1299, 1412, 1890, 2935
SspMI CTAG 6 cut(s) 1593, 3045, 3194, 3611, 3899, 4111
StyD4I CCNGG 3 cut(s) 61, 2508, 3997
StyI CCWWGG 2 cut(s) 73, 1773
TaqI TCGA 8 cut(s) 720, 793, 822, 1074, 1555, 2295, 2371, 2814
TaqII GACCGA 1 cut(s) 1422
TatI WGTACW 2 cut(s) 1234, 1734
TauI GCSGC 5 cut(s) 29, 965, 986, 1744, 2208
TfiI GAWTC 3 cut(s) 878, 2373, 2639
TscAI CASTG 8 cut(s) 12, 198, 711, 1114, 2493, 2924, 3739, 4019
TseFI GTSAC 3 cut(s) 733, 937, 3299
Tsp45I GTSAC 3 cut(s) 733, 937, 3299
TspGWI ACGGA 2 cut(s) 1777, 3950
TspRI CASTG 8 cut(s) 12, 198, 711, 1114, 2493, 2924, 3739, 4019
VneI GTGCAC 1 cut(s) 2744
VpaK11BI GGWCC 2 cut(s) 509, 2100
VspI ATTAAT 2 cut(s) 1334, 1835
XagI CCTNNNNNAGG 1 cut(s) 907
XapI RAATTY 8 cut(s) 990, 1069, 1316, 1783, 2297, 2559, 2854, 3160
XbaI TCTAGA 1 cut(s) 3610
XceI RCATGY 6 cut(s) 1049, 1863, 1867, 1975, 2518, 2889
XcmI CCANNNNNNNNNTGG 3 cut(s) 613, 3045, 3680
XmiI GTMKAC 1 cut(s) 793
XmnI GAANNNNTTC 1 cut(s) 2559
XspI CTAG 6 cut(s) 1593, 3045, 3194, 3611, 3899, 4111
ZraI GACGTC 1 cut(s) 2340
ZrmI AGTACT 2 cut(s) 1236, 1736
Zsp2I ATGCAT 3 cut(s) 1865, 2501, 2579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.