Rh1AG051800

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001612
Physical Location & Seq
Forward (+)
8724779 .. 8725291
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG051800.1

Sequence Viewer

Length: 513 bp
ATGATTCTCAACAAGAAAGCTAGGGAAGAGTTGCAGGAAAAGGCTCAGAAGCTTAATCAAGCTAAGGTTAGCACTAACGGATTTGAGGGTGTTAAGGACAGACATGACGATGGACATGACAAAATGAGAAGTACAGCAGCAACAAATGTTGCTGCCCTTGCTGCTCTTGGAGGACATGACATATTAGCGAAATGGCAACTTAAGGCGGATCAGCTAGCCCGGGAGAAGCGTCAAGGTAAAGATGTAAACTCCAAGGCTGCATCAACTGTTGGAAGAACAATGAATGGCAAGGTAGAAGCAGAGAAAAGGGGCGGTGTAGAAGCTTTAGTGTCCGCAGCTGGGAGTGCTGTTGGAAAGTTTGGGAGGAATTTCCAAGTTATGATGATGCCTCAAACAAAGGTGGCTAGTACTCGTAGTATATCTGTAAAGGATGTGATTGCTGTCCTTGAAAAGGAACCTCAGATGTCCAAGTCTACTCTGATCTATTTGGTAATGAACACTGCTAGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

170

Amino Acids

18.41

Weight (kDa)

9.99

Isoelectric Point (pI)

29.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF4 PF05236 6 - 162 5.2e-13 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 473
AciI CCGC 3 cut(s) 206, 312, 333
AclWI GGATC 1 cut(s) 216
AcsI RAATTY 1 cut(s) 367
AfaI GTAC 2 cut(s) 133, 409
AfiI CCNNNNNNNGG 2 cut(s) 339, 451
AflII CTTAAG 1 cut(s) 200
AgsI TTSAA 1 cut(s) 449
AluBI AGCT 6 cut(s) 20, 52, 62, 214, 323, 338
AluI AGCT 6 cut(s) 20, 52, 62, 214, 323, 338
AlwI GGATC 1 cut(s) 216
Ama87I CYCGRG 1 cut(s) 219
ApeKI GCWGC 5 cut(s) 137, 152, 161, 257, 335
ApoI RAATTY 1 cut(s) 367
AsuC2I CCSGG 2 cut(s) 220, 221
AsuNHI GCTAGC 2 cut(s) 214, 503
AvaI CYCGRG 1 cut(s) 219
BbvI GCAGC 5 cut(s) 139, 148, 149, 244, 347
BccI CCATC 1 cut(s) 104
BcnI CCSGG 2 cut(s) 220, 221
BfaI CTAG 4 cut(s) 21, 215, 405, 504
BfrI CTTAAG 1 cut(s) 200
BisI GCNGC 5 cut(s) 138, 153, 162, 258, 336
BlsI GCNGC 5 cut(s) 139, 154, 163, 259, 337
BmcAI AGTACT 1 cut(s) 409
Bme1390I CCNGG 2 cut(s) 220, 221
BmeT110I CYCGRG 1 cut(s) 219
BmiI GGNNCC 1 cut(s) 456
BmrFI CCNGG 2 cut(s) 220, 221
BmsI GCATC 2 cut(s) 269, 375
BmtI GCTAGC 2 cut(s) 218, 507
Bpu10I CCTNAGC 1 cut(s) 63
BpuMI CCSGG 2 cut(s) 220, 221
BsaJI CCNNGG 2 cut(s) 219, 252
Bsc4I CCNNNNNNNGG 2 cut(s) 339, 451
Bse118I RCCGGY 1 cut(s) 507
BseDI CCNNGG 2 cut(s) 219, 252
BseGI GGATG 1 cut(s) 436
BseLI CCNNNNNNNGG 2 cut(s) 339, 451
BseMII CTCAG 2 cut(s) 59, 473
BseXI GCAGC 5 cut(s) 139, 148, 149, 244, 347
BseYI CCCAGC 1 cut(s) 338
BsiHKCI CYCGRG 1 cut(s) 219
BsiSI CCGG 2 cut(s) 220, 508
BslI CCNNNNNNNGG 2 cut(s) 339, 451
BsoBI CYCGRG 1 cut(s) 219
Bsp143I GATC 2 cut(s) 208, 480
BspACI CCGC 3 cut(s) 206, 312, 333
BspCNI CTCAG 2 cut(s) 58, 472
BspLI GGNNCC 1 cut(s) 456
BspOI GCTAGC 2 cut(s) 218, 507
BspPI GGATC 1 cut(s) 216
BspTI CTTAAG 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 507
BssAI RCCGGY 1 cut(s) 507
BssECI CCNNGG 2 cut(s) 219, 252
BssMI GATC 2 cut(s) 208, 480
BssT1I CCWWGG 1 cut(s) 252
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 21
BstAFI CTTAAG 1 cut(s) 200
BstC8I GCNNGC 2 cut(s) 216, 505
BstDEI CTNAG 3 cut(s) 45, 63, 459
BstENI CCTNNNNNAGG 1 cut(s) 449
BstF5I GGATG 1 cut(s) 436
BstKTI GATC 2 cut(s) 211, 483
BstMBI GATC 2 cut(s) 208, 480
BstMWI GCNNNNNNNGC 3 cut(s) 158, 161, 344
BstSCI CCNGG 2 cut(s) 218, 219
BstV1I GCAGC 5 cut(s) 139, 148, 149, 244, 347
BtsCI GGATG 1 cut(s) 436
BtsI GCAGTG 1 cut(s) 498
BtsIMutI CAGTG 1 cut(s) 498
Cac8I GCNNGC 2 cut(s) 216, 505
Cfr10I RCCGGY 1 cut(s) 507
Cfr9I CCCGGG 1 cut(s) 219
CseI GACGC 1 cut(s) 218
Csp6I GTAC 2 cut(s) 132, 408
CviAII CATG 3 cut(s) 104, 116, 176
CviQI GTAC 2 cut(s) 132, 408
DdeI CTNAG 3 cut(s) 45, 63, 459
DpnI GATC 2 cut(s) 210, 482
DpnII GATC 2 cut(s) 208, 480
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
EciI GGCGGA 1 cut(s) 221
Eco130I CCWWGG 1 cut(s) 252
Eco88I CYCGRG 1 cut(s) 219
EcoNI CCTNNNNNAGG 1 cut(s) 449
EcoT14I CCWWGG 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 3 cut(s) 107, 119, 179
FaiI YATR 6 cut(s) 105, 117, 177, 182, 380, 419
FatI CATG 3 cut(s) 103, 115, 175
FblI GTMKAC 1 cut(s) 473
Fnu4HI GCNGC 5 cut(s) 138, 153, 162, 258, 336
FokI GGATG 1 cut(s) 443
Fsp4HI GCNGC 5 cut(s) 138, 153, 162, 258, 336
FspBI CTAG 4 cut(s) 21, 215, 405, 504
GluI GCNGC 5 cut(s) 138, 153, 162, 258, 336
GsaI CCCAGC 1 cut(s) 342
HapII CCGG 2 cut(s) 220, 508
HgaI GACGC 1 cut(s) 218
Hin1II CATG 3 cut(s) 107, 119, 179
HindIII AAGCTT 2 cut(s) 50, 321
HinfI GANTC 1 cut(s) 4
HpaII CCGG 2 cut(s) 220, 508
Hpy166II GTNNAC 2 cut(s) 247, 474
Hpy188I TCNGA 3 cut(s) 48, 462, 480
Hpy8I GTNNAC 2 cut(s) 247, 474
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 2 cut(s) 34, 260
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 161, 344
HpyF3I CTNAG 3 cut(s) 45, 63, 459
Hsp92II CATG 3 cut(s) 107, 119, 179
Kzo9I GATC 2 cut(s) 208, 480
LpnPI CCDG 3 cut(s) 20, 233, 324
Lsp1109I GCAGC 5 cut(s) 139, 148, 149, 244, 347
LweI GCATC 2 cut(s) 269, 375
MaeI CTAG 4 cut(s) 21, 215, 405, 504
MalI GATC 2 cut(s) 210, 482
MboI GATC 2 cut(s) 208, 480
MboII GAAGA 2 cut(s) 38, 285
MluCI AATT 1 cut(s) 367
MmeI TCCRAC 2 cut(s) 250, 331
MnlI CCTC 5 cut(s) 79, 164, 357, 399, 468
MseI TTAA 3 cut(s) 54, 93, 201
MslI CAYNNNNRTG 1 cut(s) 108
MspA1I CMGCKG 1 cut(s) 338
MspCI CTTAAG 1 cut(s) 200
MspI CCGG 2 cut(s) 220, 508
MspR9I CCNGG 2 cut(s) 220, 221
MwoI GCNNNNNNNGC 3 cut(s) 158, 161, 344
NciI CCSGG 2 cut(s) 220, 221
NdeII GATC 2 cut(s) 208, 480
NheI GCTAGC 2 cut(s) 214, 503
NlaIII CATG 3 cut(s) 107, 119, 179
NlaIV GGNNCC 1 cut(s) 456
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 5 cut(s) 139, 154, 163, 259, 337
PspFI CCCAGC 1 cut(s) 338
PspN4I GGNNCC 1 cut(s) 456
PvuII CAGCTG 1 cut(s) 338
RsaI GTAC 2 cut(s) 133, 409
RsaNI GTAC 2 cut(s) 132, 408
RseI CAYNNNNRTG 1 cut(s) 108
SaqAI TTAA 3 cut(s) 54, 93, 201
SatI GCNGC 5 cut(s) 138, 153, 162, 258, 336
Sau3AI GATC 2 cut(s) 208, 480
ScaI AGTACT 1 cut(s) 409
ScrFI CCNGG 2 cut(s) 220, 221
SfaNI GCATC 2 cut(s) 269, 375
SmaI CCCGGG 1 cut(s) 221
SmiMI CAYNNNNRTG 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 1 cut(s) 367
SsiI CCGC 3 cut(s) 206, 312, 333
SspMI CTAG 4 cut(s) 21, 215, 405, 504
StyD4I CCNGG 2 cut(s) 218, 219
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 1 cut(s) 268
TasI AATT 1 cut(s) 367
TatI WGTACW 2 cut(s) 131, 407
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 3 cut(s) 54, 93, 201
Tru9I TTAA 3 cut(s) 54, 93, 201
TscAI CASTG 1 cut(s) 505
TseI GCWGC 5 cut(s) 137, 152, 161, 257, 335
TspDTI ATGAA 2 cut(s) 296, 509
TspGWI ACGGA 1 cut(s) 93
TspMI CCCGGG 1 cut(s) 219
TspRI CASTG 1 cut(s) 505
Vha464I CTTAAG 1 cut(s) 200
XagI CCTNNNNNAGG 1 cut(s) 449
XapI RAATTY 1 cut(s) 367
XmaI CCCGGG 1 cut(s) 219
XmiI GTMKAC 1 cut(s) 473
XspI CTAG 4 cut(s) 21, 215, 405, 504
ZrmI AGTACT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.