Rh1AG053100

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001612
Physical Location & Seq
Forward (+)
8881323 .. 8887399
6077 bp
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UTR
Exon/CDS
Intron
Rh1AG053100.1

Sequence Viewer

Length: 234 bp
ATGAATGGCAATGCAGAAGTGGAGAAAAGGGGCGGTGTAGAAGCTTTGGTGTCTGCAGCTGGGAGTGCTGTTGGAAAGTATGGGAGGAATGCCCAAGTTATGATGATGCCTCAAACAAAGGTGGCTAGTACTCGTAGTATATCTGTCAAGGATGTGATTGCTGTTCTGGAAAAGGAACCTCAGATGTCCAAGTCTACTCTGATATATTTGCTAATGAACACTGCTAGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

77

Amino Acids

8.2

Weight (kDa)

9.77

Isoelectric Point (pI)

32.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF4 PF05236 36 - 69 1.4e-07 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 194
AciI CCGC 1 cut(s) 33
AfaI GTAC 1 cut(s) 130
AluBI AGCT 2 cut(s) 44, 59
AluI AGCT 2 cut(s) 44, 59
ApeKI GCWGC 1 cut(s) 56
AsuNHI GCTAGC 1 cut(s) 224
BbvI GCAGC 1 cut(s) 68
BfaI CTAG 2 cut(s) 126, 225
BfmI CTRYAG 1 cut(s) 54
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
BmcAI AGTACT 1 cut(s) 130
BmiI GGNNCC 1 cut(s) 177
BmsI GCATC 1 cut(s) 96
BmtI GCTAGC 1 cut(s) 228
Bse118I RCCGGY 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 16
BseGI GGATG 1 cut(s) 157
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 194
BseXI GCAGC 1 cut(s) 68
BseYI CCCAGC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 229
BsmI GAATGC 1 cut(s) 94
BspACI CCGC 1 cut(s) 33
BspCNI CTCAG 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 177
BspMAI CTGCAG 1 cut(s) 58
BspOI GCTAGC 1 cut(s) 228
BsrDI GCAATG 1 cut(s) 16
BsrFI RCCGGY 1 cut(s) 228
BssAI RCCGGY 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 226
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstSFI CTRYAG 1 cut(s) 54
BstV1I GCAGC 1 cut(s) 68
BtsCI GGATG 1 cut(s) 157
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 226
Cfr10I RCCGGY 1 cut(s) 228
Csp6I GTAC 1 cut(s) 129
CviJI RGCY 4 cut(s) 44, 59, 125, 228
CviKI_1 RGCY 4 cut(s) 44, 59, 125, 228
CviQI GTAC 1 cut(s) 129
DdeI CTNAG 1 cut(s) 180
FaiI YATR 4 cut(s) 81, 101, 140, 205
FblI GTMKAC 1 cut(s) 194
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 2 cut(s) 126, 225
GluI GCNGC 1 cut(s) 57
GsaI CCCAGC 1 cut(s) 63
HapII CCGG 1 cut(s) 229
HindIII AAGCTT 1 cut(s) 42
HpaII CCGG 1 cut(s) 229
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 2 cut(s) 183, 201
Hpy188III TCNNGA 1 cut(s) 167
Hpy8I GTNNAC 1 cut(s) 195
HpyCH4V TGCA 2 cut(s) 14, 56
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 180
LpnPI CCDG 2 cut(s) 45, 152
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 1 cut(s) 96
MaeI CTAG 2 cut(s) 126, 225
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 3 cut(s) 78, 120, 189
MspA1I CMGCKG 1 cut(s) 59
MspI CCGG 1 cut(s) 229
Mva1269I GAATGC 1 cut(s) 94
MwoI GCNNNNNNNGC 1 cut(s) 65
NheI GCTAGC 1 cut(s) 224
NlaIV GGNNCC 1 cut(s) 177
PctI GAATGC 1 cut(s) 94
PkrI GCNGC 1 cut(s) 58
PspFI CCCAGC 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 177
PstI CTGCAG 1 cut(s) 58
PvuII CAGCTG 1 cut(s) 59
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
SatI GCNGC 1 cut(s) 57
ScaI AGTACT 1 cut(s) 130
SetI ASST 4 cut(s) 46, 61, 123, 181
SfaNI GCATC 1 cut(s) 96
SfcI CTRYAG 1 cut(s) 54
SgeI CNNG 7 cut(s) 72, 107, 138, 144, 160, 179, 202
SsiI CCGC 1 cut(s) 33
SspMI CTAG 2 cut(s) 126, 225
TatI WGTACW 1 cut(s) 128
TscAI CASTG 1 cut(s) 226
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 17, 230
TspRI CASTG 1 cut(s) 226
XmiI GTMKAC 1 cut(s) 194
XspI CTAG 2 cut(s) 126, 225
ZrmI AGTACT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.