RLG00000030386

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001612
Physical Location & Seq
Reverse (-)
60514085 .. 60514765
681 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030386

Sequence Viewer

Length: 681 bp
ATGCTGTTGCTTTCGGGGCCCAAGAAGCAGCAAGCATCTCGGAAACTTGTGCTTCAAGAAAACCAAGAAGGGCTGGTTTTGCAGATGATTCCCTTGCAGAAGAAGTTGGCGGGAATCATGGGTAGGTGTGGTTTGAAAATTGGTGTTGACAAAGATGTGGAGAGATGCTTGTCAATGTGTGTGGAGGAGAGAATGAGGGGGATCATATGCAATTTGATTAGACAGTCGAAGCAGCGGGTTGATTGTGAAAAATCGAGACACCACACTGTTTCTACATCTGATGTGAAGCAGGAAATTATGATTCTCAACAAGAAAGCTAGGGAAGAGTTGCAGGAAAAGGCTCAGAAGCTTAATGAAGCTAAGGTTAGCACTAATGGATTTGAGGGTGTTAAGGACAAACATGATGATGGAGATGACAAAATGAGGAGAAGTACAGCAGCAGCAAATGTTGCTGCCCTTGCTGCTCTTGGAGGACATGACATATTGGCGAAATGGCAACTTAAGGCGGATCAGCTGGCCCGGGAGAAGTGTCGAGGTAAAGATGTAAACCACAAGGCTACATCAACTGCTGGAAGAACAATGAATGGCAATGTAGAAGCGGAGAAAATGGGCGGTGTAGAAGCTTTGGTGTCTACAGCTGGAAGTGCTGTCGGAAAGTTTGGAGGAATGCCCAAGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

227

Amino Acids

24.7

Weight (kDa)

9.51

Isoelectric Point (pI)

34.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF4 PF05236 11 - 200 4.9e-32 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 632
AciI CCGC 5 cut(s) 110, 235, 506, 599, 612
AclWI GGATC 2 cut(s) 209, 516
AfaI GTAC 1 cut(s) 433
AflII CTTAAG 1 cut(s) 500
AgsI TTSAA 2 cut(s) 56, 136
AluBI AGCT 6 cut(s) 317, 349, 359, 514, 623, 638
AluI AGCT 6 cut(s) 317, 349, 359, 514, 623, 638
Alw26I GTCTC 1 cut(s) 250
AlwI GGATC 2 cut(s) 209, 516
Ama87I CYCGRG 1 cut(s) 519
AoxI GGCC 2 cut(s) 17, 516
ApaI GGGCCC 1 cut(s) 21
ApeKI GCWGC 6 cut(s) 28, 232, 437, 440, 452, 461
AspS9I GGNCC 3 cut(s) 17, 18, 517
AsuC2I CCSGG 2 cut(s) 520, 521
AvaI CYCGRG 1 cut(s) 519
BaeGI GKGCMC 1 cut(s) 21
BanII GRGCYC 1 cut(s) 21
BbvI GCAGC 6 cut(s) 40, 244, 439, 448, 449, 452
BccI CCATC 1 cut(s) 401
BcgI CGANNNNNNTGC 2 cut(s) 20, 54
BcnI CCSGG 2 cut(s) 520, 521
BcoDI GTCTC 1 cut(s) 250
BfaI CTAG 1 cut(s) 318
BfmI CTRYAG 1 cut(s) 633
BfrI CTTAAG 1 cut(s) 500
BisI GCNGC 6 cut(s) 29, 233, 438, 441, 453, 462
BlsI GCNGC 6 cut(s) 30, 234, 439, 442, 454, 463
Bme1390I CCNGG 2 cut(s) 520, 521
BmeT110I CYCGRG 1 cut(s) 519
BmgT120I GGNCC 3 cut(s) 17, 18, 517
BmiI GGNNCC 2 cut(s) 18, 19
BmrFI CCNGG 2 cut(s) 520, 521
BmsI GCATC 2 cut(s) 44, 155
Bpu10I CCTNAGC 1 cut(s) 360
BpuMI CCSGG 2 cut(s) 520, 521
BsaJI CCNNGG 1 cut(s) 519
Bse3DI GCAATG 1 cut(s) 595
BseDI CCNNGG 1 cut(s) 519
BseMI GCAATG 1 cut(s) 595
BseMII CTCAG 1 cut(s) 356
BseRI GAGGAG 2 cut(s) 200, 439
BseSI GKGCMC 1 cut(s) 21
BseXI GCAGC 6 cut(s) 40, 244, 439, 448, 449, 452
BshFI GGCC 2 cut(s) 19, 518
BsiHKCI CYCGRG 1 cut(s) 519
BsiSI CCGG 1 cut(s) 520
BsmAI GTCTC 1 cut(s) 250
BsmI GAATGC 1 cut(s) 672
BsnI GGCC 2 cut(s) 19, 518
BsoBI CYCGRG 1 cut(s) 519
Bsp120I GGGCCC 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 2 cut(s) 201, 508
BspACI CCGC 5 cut(s) 110, 235, 506, 599, 612
BspANI GGCC 2 cut(s) 19, 518
BspCNI CTCAG 1 cut(s) 355
BspLI GGNNCC 2 cut(s) 18, 19
BspPI GGATC 2 cut(s) 209, 516
BspTI CTTAAG 1 cut(s) 500
BsrDI GCAATG 1 cut(s) 595
BssECI CCNNGG 1 cut(s) 519
BssMI GATC 2 cut(s) 201, 508
Bst4CI ACNGT 2 cut(s) 225, 268
Bst6I CTCTTC 1 cut(s) 318
BstAFI CTTAAG 1 cut(s) 500
BstAPI GCANNNNNTGC 1 cut(s) 449
BstC8I GCNNGC 2 cut(s) 33, 516
BstDEI CTNAG 2 cut(s) 342, 360
BstKTI GATC 2 cut(s) 204, 511
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 2 cut(s) 201, 508
BstMWI GCNNNNNNNGC 7 cut(s) 16, 25, 79, 449, 458, 461, 644
BstSCI CCNGG 2 cut(s) 518, 519
BstSFI CTRYAG 1 cut(s) 633
BstSLI GKGCMC 1 cut(s) 21
BstV1I GCAGC 6 cut(s) 40, 244, 439, 448, 449, 452
BsuRI GGCC 2 cut(s) 19, 518
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 2 cut(s) 33, 516
Cfr13I GGNCC 3 cut(s) 17, 18, 517
Cfr9I CCCGGG 1 cut(s) 519
Csp6I GTAC 1 cut(s) 432
CspCI CAANNNNNGTGG 2 cut(s) 162, 197
CviAII CATG 3 cut(s) 118, 401, 476
CviQI GTAC 1 cut(s) 432
DdeI CTNAG 2 cut(s) 342, 360
DpnI GATC 2 cut(s) 203, 510
DpnII GATC 2 cut(s) 201, 508
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
EciI GGCGGA 1 cut(s) 521
Eco24I GRGCYC 1 cut(s) 21
Eco88I CYCGRG 1 cut(s) 519
EcoO109I RGGNCCY 1 cut(s) 17
EcoT38I GRGCYC 1 cut(s) 21
FaeI CATG 3 cut(s) 121, 404, 479
FaiI YATR 8 cut(s) 119, 206, 208, 299, 402, 477, 482, 679
FatI CATG 3 cut(s) 117, 400, 475
FauI CCCGC 2 cut(s) 103, 228
FauNDI CATATG 1 cut(s) 206
FblI GTMKAC 1 cut(s) 632
Fnu4HI GCNGC 6 cut(s) 29, 233, 438, 441, 453, 462
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 6 cut(s) 29, 233, 438, 441, 453, 462
FspBI CTAG 1 cut(s) 318
GluI GCNGC 6 cut(s) 29, 233, 438, 441, 453, 462
HaeIII GGCC 2 cut(s) 19, 518
HapII CCGG 1 cut(s) 520
Hin1II CATG 3 cut(s) 121, 404, 479
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HindIII AAGCTT 2 cut(s) 347, 621
HinfI GANTC 3 cut(s) 88, 114, 301
HpaII CCGG 1 cut(s) 520
Hpy166II GTNNAC 3 cut(s) 148, 547, 633
Hpy188I TCNGA 4 cut(s) 42, 280, 345, 653
Hpy188III TCNNGA 2 cut(s) 56, 255
Hpy8I GTNNAC 3 cut(s) 148, 547, 633
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 2 cut(s) 225, 268
HpyCH4V TGCA 4 cut(s) 82, 97, 210, 331
HpyF10VI GCNNNNNNNGC 7 cut(s) 16, 25, 79, 449, 458, 461, 644
HpyF3I CTNAG 2 cut(s) 342, 360
Hsp92II CATG 3 cut(s) 121, 404, 479
Kzo9I GATC 2 cut(s) 201, 508
LpnPI CCDG 7 cut(s) 59, 275, 317, 500, 533, 555, 624
Lsp1109I GCAGC 6 cut(s) 40, 244, 439, 448, 449, 452
LweI GCATC 2 cut(s) 44, 155
MaeI CTAG 1 cut(s) 318
MalI GATC 2 cut(s) 203, 510
MboI GATC 2 cut(s) 201, 508
MboII GAAGA 3 cut(s) 112, 335, 585
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 3 cut(s) 138, 211, 294
MmeI TCCRAC 1 cut(s) 631
MnlI CCTC 7 cut(s) 178, 189, 376, 417, 464, 527, 656
MseI TTAA 3 cut(s) 351, 390, 501
MslI CAYNNNNRTG 1 cut(s) 405
MspA1I CMGCKG 3 cut(s) 235, 514, 638
MspCI CTTAAG 1 cut(s) 500
MspI CCGG 1 cut(s) 520
MspR9I CCNGG 2 cut(s) 520, 521
Mva1269I GAATGC 1 cut(s) 672
MwoI GCNNNNNNNGC 7 cut(s) 16, 25, 79, 449, 458, 461, 644
NciI CCSGG 2 cut(s) 520, 521
NdeI CATATG 1 cut(s) 206
NdeII GATC 2 cut(s) 201, 508
NlaIII CATG 3 cut(s) 121, 404, 479
NlaIV GGNNCC 2 cut(s) 18, 19
PctI GAATGC 1 cut(s) 672
PfeI GAWTC 3 cut(s) 88, 114, 301
PkrI GCNGC 6 cut(s) 30, 234, 439, 442, 454, 463
PspN4I GGNNCC 2 cut(s) 18, 19
PspOMI GGGCCC 1 cut(s) 17
PspPI GGNCC 3 cut(s) 17, 18, 517
PvuII CAGCTG 2 cut(s) 514, 638
RsaI GTAC 1 cut(s) 433
RsaNI GTAC 1 cut(s) 432
RseI CAYNNNNRTG 1 cut(s) 405
SaqAI TTAA 3 cut(s) 351, 390, 501
SatI GCNGC 6 cut(s) 29, 233, 438, 441, 453, 462
Sau3AI GATC 2 cut(s) 201, 508
Sau96I GGNCC 3 cut(s) 17, 18, 517
ScrFI CCNGG 2 cut(s) 520, 521
SduI GDGCHC 1 cut(s) 21
SetI ASST 9 cut(s) 128, 319, 351, 361, 366, 516, 538, 625, 640
SfaNI GCATC 2 cut(s) 44, 155
SfcI CTRYAG 1 cut(s) 633
SmaI CCCGGG 1 cut(s) 521
SmiMI CAYNNNNRTG 1 cut(s) 405
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
Sse9I AATT 3 cut(s) 138, 211, 294
SsiI CCGC 5 cut(s) 110, 235, 506, 599, 612
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 2 cut(s) 518, 519
TaaI ACNGT 2 cut(s) 225, 268
TaqI TCGA 3 cut(s) 227, 254, 532
TasI AATT 3 cut(s) 138, 211, 294
TatI WGTACW 1 cut(s) 431
TfiI GAWTC 3 cut(s) 88, 114, 301
Tru1I TTAA 3 cut(s) 351, 390, 501
Tru9I TTAA 3 cut(s) 351, 390, 501
TscAI CASTG 1 cut(s) 271
TseI GCWGC 6 cut(s) 28, 232, 437, 440, 452, 461
TspDTI ATGAA 2 cut(s) 369, 596
TspMI CCCGGG 1 cut(s) 519
TspRI CASTG 1 cut(s) 271
Vha464I CTTAAG 1 cut(s) 500
XmaI CCCGGG 1 cut(s) 519
XmiI GTMKAC 1 cut(s) 632
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.